Wall clock time and date at job start Tue Mar 31 2020 23:03:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.39044 * 121.01896 * 2 1
4 4 C 1.47758 * 120.27051 * 0.04534 * 3 2 1
5 5 O 1.21561 * 120.00110 * 309.92471 * 4 3 2
6 6 N 1.34784 * 119.99630 * 129.92339 * 4 3 2
7 7 C 1.46500 * 120.00053 * 4.52093 * 6 4 3
8 8 C 1.46501 * 119.99664 * 184.51725 * 6 4 3
9 9 H 1.09000 * 110.63778 * 358.31235 * 8 6 4
10 10 C 1.55158 * 110.72043 * 234.97928 * 8 6 4
11 11 C 1.54914 * 101.57865 * 277.13949 * 10 8 6
12 12 N 1.47420 * 104.83088 * 322.99009 * 11 10 8
13 13 C 1.36942 * 125.64413 * 204.09080 * 12 11 10
14 14 H 1.08007 * 119.99309 * 180.02562 * 13 12 11
15 15 C 1.38810 * 120.00391 * 0.04565 * 13 12 11
16 16 N 1.31612 * 119.99524 * 359.97438 * 15 13 12
17 17 Si 1.86799 * 120.00015 * 179.97438 * 15 13 12
18 18 H 1.48494 * 109.47077 * 359.97438 * 17 15 13
19 19 H 1.48498 * 109.47151 * 120.00167 * 17 15 13
20 20 H 1.48505 * 109.46921 * 239.99834 * 17 15 13
21 21 C 1.47019 * 108.70568 * 24.13052 * 12 11 10
22 22 C 1.40565 * 119.45920 * 180.02562 * 3 2 1
23 23 N 1.30829 * 121.54133 * 359.97438 * 22 3 2
24 24 C 1.33792 * 121.71950 * 0.02562 * 23 22 3
25 25 C 1.40532 * 120.83168 * 179.97438 * 24 23 22
26 26 C 1.36129 * 119.81723 * 180.02562 * 25 24 23
27 27 C 1.39349 * 121.09233 * 359.90809 * 26 25 24
28 28 C 1.36137 * 120.83702 * 0.13735 * 27 26 25
29 29 C 1.40491 * 121.01547 * 180.02562 * 2 1 3
30 30 H 1.09001 * 109.47390 * 95.19347 * 1 2 3
31 31 H 1.08992 * 109.47282 * 215.19775 * 1 2 3
32 32 H 1.09007 * 109.46712 * 335.19853 * 1 2 3
33 33 H 1.09001 * 109.47238 * 90.98569 * 7 6 4
34 34 H 1.08997 * 109.46813 * 210.98253 * 7 6 4
35 35 H 1.08998 * 109.46830 * 330.98416 * 7 6 4
36 36 H 1.08997 * 111.00408 * 35.21167 * 10 8 6
37 37 H 1.08997 * 111.00471 * 159.06830 * 10 8 6
38 38 H 1.08997 * 110.36242 * 204.15089 * 11 10 8
39 39 H 1.08997 * 110.45980 * 81.87560 * 11 10 8
40 40 H 0.97003 * 120.00174 * 180.02562 * 16 15 13
41 41 H 1.08992 * 109.88425 * 239.52111 * 21 12 11
42 42 H 1.09008 * 109.88387 * 118.35395 * 21 12 11
43 43 H 1.07999 * 119.22922 * 179.97438 * 22 3 2
44 44 H 1.08000 * 120.08894 * 359.74377 * 25 24 23
45 45 H 1.08001 * 119.45264 * 179.97438 * 26 25 24
46 46 H 1.08000 * 119.58052 * 180.02562 * 27 26 25
47 47 H 1.08001 * 120.18553 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2236 1.1916 0.0000
4 6 1.5137 2.4875 0.0010
5 8 0.6286 2.6964 -0.8056
6 7 1.8477 3.4380 0.8964
7 6 2.9788 3.2255 1.8028
8 6 1.0795 4.6837 0.9631
9 1 0.2962 4.6931 0.2051
10 6 2.0131 5.9133 0.8084
11 6 2.5433 6.0848 2.2539
12 7 1.3962 5.7533 3.1184
13 6 1.2152 6.1862 4.4050
14 1 0.3370 5.8857 4.9572
15 6 2.1600 7.0115 4.9991
16 7 3.2301 7.3776 4.3260
17 14 1.9126 7.6026 6.7537
18 1 0.6393 7.0542 7.2858
19 1 3.0431 7.1374 7.5968
20 1 1.8584 9.0865 6.7732
21 6 0.4793 4.8803 2.3711
22 6 3.6287 1.1533 -0.0005
23 7 4.2825 0.0201 -0.0006
24 6 3.6482 -1.1579 -0.0006
25 6 4.3692 -2.3642 -0.0011
26 6 3.7028 -3.5511 -0.0016
27 6 2.3100 -3.5944 0.0003
28 6 1.5762 -2.4477 -0.0001
29 6 2.2309 -1.2040 -0.0005
30 1 -0.3634 -0.0930 -1.0234
31 1 -0.3633 -0.8397 0.5923
32 1 -0.3633 0.9330 0.4311
33 1 3.8886 3.6154 1.3462
34 1 2.7932 3.7444 2.7432
35 1 3.0962 2.1588 1.9933
36 1 2.8277 5.7008 0.1161
37 1 1.4521 6.7923 0.4912
38 1 2.8601 7.1141 2.4220
39 1 3.3697 5.3990 2.4405
40 1 3.8906 7.9541 4.7412
41 1 -0.5006 5.3512 2.2939
42 1 0.3915 3.9173 2.8744
43 1 4.1815 2.0811 -0.0010
44 1 5.4491 -2.3494 -0.0057
45 1 4.2628 -4.4746 -0.0025
46 1 1.8062 -4.5497 0.0002
47 1 0.4971 -2.4935 0.0010
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001033275385.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:03:13
Heat of formation + Delta-G solvation = 45.090739 kcal
Electronic energy + Delta-G solvation = -29516.405912 eV
Core-core repulsion = 25664.593421 eV
Total energy + Delta-G solvation = -3851.812490 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-42.29629 -41.02909 -39.12971 -37.91024 -36.09874 -35.59717 -34.05891 -31.94444
-31.35337 -30.91112 -29.65399 -28.98459 -27.71689 -26.41244 -25.18642 -24.89200
-22.49354 -22.08718 -22.00542 -20.39894 -19.24925 -18.94911 -18.83452 -17.95747
-17.61138 -16.73834 -16.64335 -16.35532 -15.70157 -15.66793 -15.49105 -15.43819
-15.03907 -14.95548 -14.38938 -14.24523 -14.06113 -13.98729 -13.72263 -13.61779
-13.40860 -13.30083 -13.09646 -12.94224 -12.81709 -12.70471 -12.68255 -12.41459
-12.39536 -12.01738 -11.97784 -11.80793 -11.42980 -11.22956 -11.13957 -10.69741
-10.50089 -9.83469 -9.73567 -9.23626 -8.86492 -7.75573 -5.19362 -0.77508
-0.39821 0.84264 1.42148 1.48095 1.48968 1.58563 1.76531 2.03351
2.50301 3.01136 3.13390 3.34555 3.35168 3.43714 3.54931 3.69770
3.81304 3.85152 3.89195 4.01063 4.16745 4.20061 4.26658 4.31300
4.38296 4.44578 4.53249 4.55352 4.60695 4.64308 4.68445 4.84325
4.88715 4.92627 4.94918 5.01167 5.02871 5.08274 5.10755 5.37237
5.43146 5.44771 5.48042 5.52674 5.67104 5.84261 5.85958 6.27810
6.33384 6.75435 6.95528 7.13117 7.78686 8.42166 9.25614
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.017392 B = 0.002759 C = 0.002646
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1609.594607 B =10145.358126 C =10580.382146
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C 0.030 3.970
3 C -0.209 4.209
4 C 0.571 3.429
5 O -0.563 6.563
6 N -0.586 5.586
7 C 0.078 3.922
8 C 0.138 3.862
9 H 0.108 0.892
10 C -0.140 4.140
11 C 0.150 3.850
12 N -0.618 5.618
13 C -0.235 4.235
14 H 0.077 0.923
15 C -0.061 4.061
16 N -0.943 5.943
17 Si 0.975 3.025
18 H -0.270 1.270
19 H -0.293 1.293
20 H -0.293 1.293
21 C 0.129 3.871
22 C 0.161 3.839
23 N -0.498 5.498
24 C 0.116 3.884
25 C -0.119 4.119
26 C -0.080 4.080
27 C -0.114 4.114
28 C -0.095 4.095
29 C -0.124 4.124
30 H 0.096 0.904
31 H 0.103 0.897
32 H 0.059 0.941
33 H 0.072 0.928
34 H 0.071 0.929
35 H 0.074 0.926
36 H 0.081 0.919
37 H 0.076 0.924
38 H 0.071 0.929
39 H 0.015 0.985
40 H 0.247 0.753
41 H 0.036 0.964
42 H 0.023 0.977
43 H 0.171 0.829
44 H 0.143 0.857
45 H 0.165 0.835
46 H 0.165 0.835
47 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.966 -22.870 -10.436 25.157
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.022 3.978
3 C -0.214 4.214
4 C 0.360 3.640
5 O -0.442 6.442
6 N -0.316 5.316
7 C -0.065 4.065
8 C 0.035 3.965
9 H 0.126 0.874
10 C -0.179 4.179
11 C 0.026 3.974
12 N -0.345 5.345
13 C -0.364 4.364
14 H 0.095 0.905
15 C -0.254 4.254
16 N -0.593 5.593
17 Si 0.804 3.196
18 H -0.195 1.195
19 H -0.220 1.220
20 H -0.220 1.220
21 C 0.003 3.997
22 C -0.013 4.013
23 N -0.206 5.206
24 C -0.004 4.004
25 C -0.137 4.137
26 C -0.099 4.099
27 C -0.131 4.131
28 C -0.113 4.113
29 C -0.126 4.126
30 H 0.114 0.886
31 H 0.121 0.879
32 H 0.078 0.922
33 H 0.090 0.910
34 H 0.090 0.910
35 H 0.092 0.908
36 H 0.100 0.900
37 H 0.095 0.905
38 H 0.089 0.911
39 H 0.033 0.967
40 H 0.057 0.943
41 H 0.054 0.946
42 H 0.041 0.959
43 H 0.188 0.812
44 H 0.161 0.839
45 H 0.182 0.818
46 H 0.183 0.817
47 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges -0.416 -22.746 -10.680 25.132
hybrid contribution -0.608 1.103 1.120 1.685
sum -1.024 -21.643 -9.561 23.683
Atomic orbital electron populations
1.20968 0.88039 1.03972 1.04436 1.20787 0.97748 0.90580 0.88704
1.20681 0.95833 0.93613 1.11307 1.18228 0.82243 0.83435 0.80140
1.90733 1.33207 1.80870 1.39439 1.47733 1.31934 1.16737 1.35194
1.22120 0.88163 1.01772 0.94430 1.21967 0.94321 0.83176 0.97075
0.87387 1.23206 0.99357 0.96690 0.98630 1.21911 0.88633 1.01123
0.85753 1.44739 1.22208 1.56010 1.11552 1.19391 1.04820 1.23549
0.88619 0.90547 1.25511 0.96855 1.00863 1.02127 1.70030 1.12057
1.40519 1.36676 0.85054 0.77317 0.77347 0.79849 1.19497 1.21970
1.22013 1.21696 0.93528 0.93419 0.91106 1.23211 0.89822 0.97119
0.91109 1.67990 1.39873 0.97962 1.14754 1.19454 0.90484 0.93082
0.97380 1.21052 1.01118 0.90095 1.01446 1.21432 0.95043 0.98404
0.95031 1.21410 0.94093 0.99544 0.98072 1.21393 1.01609 0.90271
0.98049 1.18868 0.93854 0.94742 1.05149 0.88563 0.87877 0.92199
0.90989 0.90994 0.90791 0.90028 0.90495 0.91144 0.96712 0.94338
0.94619 0.95914 0.81164 0.83926 0.81770 0.81745 0.82676
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.43 8.68 71.24 0.62 -1.82 16
2 C 0.03 0.75 5.98 -19.12 -0.11 0.64 16
3 C -0.21 -5.93 4.86 -20.00 -0.10 -6.03 16
4 C 0.57 18.40 6.32 86.76 0.55 18.95 16
5 O -0.56 -20.54 15.10 -3.91 -0.06 -20.60 16
6 N -0.59 -19.21 2.82 -819.46 -2.31 -21.53 16
7 C 0.08 2.45 7.18 127.77 0.92 3.37 16
8 C 0.14 4.95 3.58 46.18 0.17 5.11 16
9 H 0.11 3.79 7.00 -2.39 -0.02 3.77 16
10 C -0.14 -5.15 6.53 31.99 0.21 -4.94 16
11 C 0.15 6.98 5.01 86.86 0.43 7.41 16
12 N -0.62 -30.56 2.97 -692.00 -2.06 -32.62 16
13 C -0.23 -12.80 10.27 84.03 0.86 -11.93 16
14 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16
15 C -0.06 -3.34 5.49 84.86 0.47 -2.87 16
16 N -0.94 -54.20 10.09 21.65 0.22 -53.98 16
17 Si 0.98 44.90 29.55 68.60 2.03 46.93 16
18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16
19 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16
20 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16
21 C 0.13 5.31 6.24 86.73 0.54 5.85 16
22 C 0.16 4.35 8.83 85.41 0.75 5.11 16
23 N -0.50 -13.70 10.30 -187.68 -1.93 -15.63 16
24 C 0.12 2.84 6.61 40.29 0.27 3.11 16
25 C -0.12 -2.15 9.97 22.34 0.22 -1.93 16
26 C -0.08 -0.93 9.94 22.05 0.22 -0.71 16
27 C -0.11 -1.21 9.96 22.05 0.22 -0.99 16
28 C -0.09 -1.41 9.31 22.34 0.21 -1.20 16
29 C -0.12 -2.77 5.74 -21.29 -0.12 -2.90 16
30 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16
31 H 0.10 1.47 6.79 -2.39 -0.02 1.45 16
32 H 0.06 1.51 6.55 -2.38 -0.02 1.50 16
33 H 0.07 2.06 7.28 -2.39 -0.02 2.04 16
34 H 0.07 2.80 5.27 -2.39 -0.01 2.78 16
35 H 0.07 2.12 5.86 -2.39 -0.01 2.11 16
36 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16
37 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16
38 H 0.07 3.81 5.87 -2.39 -0.01 3.80 16
39 H 0.02 0.71 5.54 -2.39 -0.01 0.70 16
40 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16
41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16
42 H 0.02 0.96 8.04 -2.38 -0.02 0.94 16
43 H 0.17 4.16 6.58 -2.91 -0.02 4.14 16
44 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16
45 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16
46 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16
47 H 0.16 1.52 6.56 -2.91 -0.02 1.50 16
Total: -1.00 -68.99 366.86 3.20 -65.79
By element:
Atomic # 1 Polarization: 16.40 SS G_CDS: 1.00 Total: 17.40 kcal
Atomic # 6 Polarization: 7.92 SS G_CDS: 6.32 Total: 14.24 kcal
Atomic # 7 Polarization: -117.68 SS G_CDS: -6.08 Total: -123.76 kcal
Atomic # 8 Polarization: -20.54 SS G_CDS: -0.06 Total: -20.60 kcal
Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal
Total: -68.99 3.20 -65.79 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033275385.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.882 kcal
(2) G-P(sol) polarization free energy of solvation -68.995 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.887 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.791 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.091 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds