Wall clock time and date at job start Tue Mar 31 2020 22:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86797 * 119.99927 * 2 1 4 4 H 1.48494 * 109.47145 * 264.98325 * 3 2 1 5 5 H 1.48505 * 109.47422 * 24.98710 * 3 2 1 6 6 H 1.48501 * 109.46847 * 144.98603 * 3 2 1 7 7 C 1.38814 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99308 * 199.78591 * 7 2 1 9 9 N 1.36930 * 120.00176 * 19.78365 * 7 2 1 10 10 C 1.50170 * 120.53753 * 31.15533 * 9 7 2 11 11 C 1.46239 * 107.52883 * 109.61359 * 10 9 7 12 12 C 1.52528 * 114.28208 * 58.40907 * 11 10 9 13 13 C 1.50125 * 105.41464 * 270.59400 * 12 11 10 14 14 C 1.54842 * 110.81440 * 97.68292 * 13 12 11 15 15 H 1.08998 * 109.36141 * 81.19952 * 14 13 12 16 16 N 1.46501 * 109.35404 * 200.93017 * 14 13 12 17 17 C 1.34780 * 119.99712 * 205.27547 * 16 14 13 18 18 O 1.21594 * 120.00112 * 359.97438 * 17 16 14 19 19 C 1.47555 * 120.00033 * 179.97438 * 17 16 14 20 20 C 1.38691 * 120.38695 * 353.98239 * 19 17 16 21 21 C 1.38974 * 120.53767 * 180.02562 * 20 19 17 22 22 C 1.36208 * 121.23611 * 359.96377 * 21 20 19 23 23 C 1.40713 * 120.20119 * 0.27260 * 22 21 20 24 24 N 1.33690 * 120.93772 * 180.24968 * 23 22 21 25 25 C 1.31058 * 121.34145 * 179.78700 * 24 23 22 26 26 C 1.39342 * 121.70827 * 359.70737 * 25 24 23 27 27 C 1.36676 * 119.86901 * 0.02562 * 26 25 24 28 28 C 1.40468 * 118.16980 * 359.97438 * 27 26 25 29 29 C 1.43132 * 120.56503 * 211.11193 * 9 7 2 30 30 H 0.96994 * 119.99409 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.84734 * 350.10899 * 10 9 7 32 32 H 1.08998 * 109.85023 * 229.11756 * 10 9 7 33 33 H 1.09000 * 108.52648 * 297.16981 * 11 10 9 34 34 H 1.09000 * 108.40404 * 179.56603 * 11 10 9 35 35 H 1.08999 * 110.25428 * 151.61463 * 12 11 10 36 36 H 1.09010 * 110.24507 * 29.56745 * 12 11 10 37 37 H 1.08996 * 109.20883 * 337.33723 * 13 12 11 38 38 H 1.08999 * 109.16917 * 217.99686 * 13 12 11 39 39 H 0.97002 * 120.00629 * 25.26952 * 16 14 13 40 40 H 1.08001 * 119.72814 * 0.02969 * 20 19 17 41 41 H 1.08001 * 119.37812 * 179.97438 * 21 20 19 42 42 H 1.08001 * 119.89868 * 179.97438 * 22 21 20 43 43 H 1.08001 * 119.15072 * 179.73060 * 25 24 23 44 44 H 1.08003 * 120.06960 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.91766 * 179.97438 * 27 26 25 46 46 H 1.08998 * 108.13151 * 149.79912 * 29 9 7 47 47 H 1.08996 * 107.99399 * 33.33361 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6038 1.9852 -1.3946 5 1 1.3988 2.6810 0.5914 6 1 3.4908 1.4730 0.8033 7 6 2.0103 -1.2022 0.0005 8 1 3.0425 -1.2296 0.3172 9 7 1.3862 -2.3532 -0.4003 10 6 0.3044 -2.3120 -1.4410 11 6 0.8390 -2.9243 -2.6566 12 6 1.3139 -4.3627 -2.4778 13 6 2.7568 -4.2595 -2.0761 14 6 2.9094 -4.3709 -0.5393 15 1 2.8843 -5.4212 -0.2488 16 7 4.1901 -3.7857 -0.1349 17 6 4.7853 -4.1890 1.0051 18 8 4.2591 -5.0383 1.6981 19 6 6.0755 -3.6000 1.4121 20 6 6.7437 -2.7241 0.5697 21 6 7.9593 -2.1679 0.9497 22 6 8.5263 -2.4637 2.1523 23 6 7.8866 -3.3513 3.0372 24 7 8.4274 -3.6481 4.2233 25 6 7.8364 -4.4705 5.0552 26 6 6.6164 -5.0702 4.7496 27 6 6.0076 -4.8045 3.5550 28 6 6.6456 -3.9223 2.6674 29 6 1.7547 -3.6156 0.1647 30 1 -0.4849 0.8400 -0.0004 31 1 0.0222 -1.2782 -1.6407 32 1 -0.5636 -2.8731 -1.0950 33 1 1.6785 -2.3236 -3.0067 34 1 0.0615 -2.9088 -3.4204 35 1 1.2216 -4.9100 -3.4159 36 1 0.7383 -4.8553 -1.6939 37 1 3.1534 -3.2999 -2.4073 38 1 3.3189 -5.0633 -2.5515 39 1 4.6098 -3.1079 -0.6876 40 1 6.3159 -2.4721 -0.3894 41 1 8.4638 -1.4883 0.2788 42 1 9.4720 -2.0194 2.4255 43 1 8.3071 -4.6888 6.0025 44 1 6.1530 -5.7443 5.4548 45 1 5.0622 -5.2602 3.3006 46 1 0.8750 -4.2592 0.1597 47 1 2.0411 -3.4490 1.2031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034337379.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:27 Heat of formation + Delta-G solvation = 51.849473 kcal Electronic energy + Delta-G solvation = -29868.713093 eV Core-core repulsion = 26017.193684 eV Total energy + Delta-G solvation = -3851.519410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.04481 -39.43880 -37.85609 -36.90832 -34.45737 -33.42209 -33.28199 -31.15090 -30.75655 -30.59094 -29.41490 -26.22118 -24.93235 -24.21373 -23.52002 -23.34156 -22.62259 -20.61878 -19.84342 -19.33371 -18.23646 -17.52521 -16.83616 -16.60360 -16.11236 -15.69969 -15.15519 -15.00578 -14.82963 -14.60815 -14.38512 -14.02809 -13.86162 -13.71908 -13.27027 -13.17583 -12.85010 -12.69094 -12.30572 -12.15458 -11.92381 -11.79684 -11.69035 -11.40024 -11.20926 -11.04408 -10.86979 -10.64869 -10.47633 -10.25835 -10.07984 -9.97814 -9.92515 -9.67275 -9.47114 -9.10191 -8.88240 -8.86858 -8.42746 -8.26371 -6.63922 -5.84000 -3.29263 0.12433 0.76110 1.76435 2.65335 3.30779 3.33057 3.40063 3.41011 3.47195 4.12733 4.19413 4.44918 4.61773 4.65674 4.76261 4.88261 5.01282 5.06659 5.14300 5.25993 5.27810 5.35745 5.39331 5.43975 5.66833 5.72520 5.79694 5.90052 5.94756 5.98162 6.04595 6.09047 6.17972 6.26769 6.29812 6.38362 6.44570 6.54569 6.58204 6.69544 6.71058 6.74804 6.95480 7.01373 7.04390 7.32995 7.63580 7.75119 7.82064 7.83805 8.45643 8.48558 9.12736 9.81882 10.38375 11.22965 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011684 B = 0.003834 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.879187 B = 7302.030523 C = 8384.165946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.007 3.993 3 Si 0.894 3.106 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.062 0.938 9 N -0.577 5.577 10 C 0.146 3.854 11 C -0.132 4.132 12 C -0.111 4.111 13 C -0.110 4.110 14 C 0.115 3.885 15 H 0.080 0.920 16 N -0.695 5.695 17 C 0.559 3.441 18 O -0.545 6.545 19 C -0.102 4.102 20 C -0.076 4.076 21 C -0.108 4.108 22 C -0.073 4.073 23 C 0.118 3.882 24 N -0.481 5.481 25 C 0.130 3.870 26 C -0.185 4.185 27 C -0.055 4.055 28 C -0.067 4.067 29 C 0.150 3.850 30 H 0.254 0.746 31 H 0.099 0.901 32 H 0.021 0.979 33 H 0.056 0.944 34 H 0.038 0.962 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.045 0.955 39 H 0.398 0.602 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.157 0.843 44 H 0.137 0.863 45 H 0.180 0.820 46 H 0.036 0.964 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.727 -8.709 -0.107 15.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.192 4.192 3 Si 0.724 3.276 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.080 0.920 9 N -0.297 5.297 10 C 0.022 3.978 11 C -0.171 4.171 12 C -0.149 4.149 13 C -0.149 4.149 14 C 0.007 3.993 15 H 0.098 0.902 16 N -0.344 5.344 17 C 0.346 3.654 18 O -0.425 6.425 19 C -0.106 4.106 20 C -0.096 4.096 21 C -0.128 4.128 22 C -0.092 4.092 23 C -0.003 4.003 24 N -0.190 5.190 25 C -0.042 4.042 26 C -0.204 4.204 27 C -0.080 4.080 28 C -0.069 4.069 29 C 0.019 3.981 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.233 0.767 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.174 0.826 44 H 0.155 0.845 45 H 0.197 0.803 46 H 0.054 0.946 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.994 -8.682 0.503 15.635 hybrid contribution -0.079 0.992 -0.457 1.095 sum 12.915 -7.690 0.046 15.031 Atomic orbital electron populations 1.70024 1.05334 1.25514 1.52830 1.25018 0.95077 0.98374 1.00751 0.86442 0.79376 0.84043 0.77760 1.21387 1.21766 1.20487 1.19028 0.93521 0.85391 1.40023 0.92035 1.43836 1.41457 1.01140 1.43316 1.20352 0.89285 1.02017 0.86137 1.21074 1.00598 0.95114 1.00318 1.20954 0.95829 0.97913 1.00203 1.21667 0.97446 1.01441 0.94299 1.22951 0.83976 0.97631 0.94701 0.90238 1.45982 1.23105 1.41912 1.23360 1.17972 0.84014 0.82005 0.81410 1.90515 1.66087 1.33667 1.52270 1.20004 0.95855 0.99874 0.94881 1.21474 0.94619 0.94187 0.99276 1.20827 0.95453 0.99843 0.96671 1.20946 0.99898 0.95703 0.92681 1.18843 0.91877 0.97083 0.92523 1.68027 1.33825 1.14550 1.02562 1.22966 0.92194 0.91096 0.97979 1.22040 0.97289 1.02585 0.98533 1.22721 1.00992 0.92727 0.91595 1.18646 0.95208 0.98466 0.94612 1.20601 0.93576 0.88531 0.95378 0.93642 0.88285 0.96029 0.92525 0.94361 0.92787 0.91491 0.91092 0.93656 0.76683 0.84851 0.84598 0.84514 0.82576 0.84526 0.80298 0.94575 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.04 11.27 55.49 0.63 -24.42 16 2 C 0.01 0.19 4.93 -17.43 -0.09 0.10 16 3 Si 0.89 20.98 29.60 -169.99 -5.03 15.95 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.25 -6.41 9.54 -15.06 -0.14 -6.55 16 8 H 0.06 1.57 7.90 -52.49 -0.41 1.16 16 9 N -0.58 -13.35 2.56 -175.30 -0.45 -13.80 16 10 C 0.15 3.21 5.36 -5.20 -0.03 3.19 16 11 C -0.13 -2.34 5.20 -30.19 -0.16 -2.50 16 12 C -0.11 -1.68 5.76 -28.40 -0.16 -1.85 16 13 C -0.11 -1.65 5.23 -27.19 -0.14 -1.79 16 14 C 0.11 1.92 2.92 -65.95 -0.19 1.73 16 15 H 0.08 1.34 7.57 -51.93 -0.39 0.94 16 16 N -0.70 -11.07 5.03 -52.92 -0.27 -11.34 16 17 C 0.56 9.42 7.57 -12.46 -0.09 9.33 16 18 O -0.54 -10.27 13.07 5.28 0.07 -10.20 16 19 C -0.10 -1.55 5.90 -104.66 -0.62 -2.17 16 20 C -0.08 -0.96 9.51 -39.14 -0.37 -1.33 16 21 C -0.11 -1.18 9.92 -40.04 -0.40 -1.58 16 22 C -0.07 -0.89 9.96 -39.38 -0.39 -1.28 16 23 C 0.12 1.71 6.60 -84.87 -0.56 1.15 16 24 N -0.48 -6.74 10.34 -10.99 -0.11 -6.86 16 25 C 0.13 1.52 11.15 -17.47 -0.19 1.32 16 26 C -0.18 -2.20 10.03 -39.74 -0.40 -2.60 16 27 C -0.06 -0.82 9.29 -39.31 -0.37 -1.18 16 28 C -0.07 -1.03 5.76 -106.53 -0.61 -1.64 16 29 C 0.15 3.09 4.76 -4.82 -0.02 3.06 16 30 H 0.25 6.92 8.31 -40.82 -0.34 6.59 16 31 H 0.10 2.49 5.66 -51.93 -0.29 2.20 16 32 H 0.02 0.48 8.12 -51.93 -0.42 0.06 16 33 H 0.06 1.05 6.93 -51.93 -0.36 0.69 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.06 6.28 -51.92 -0.33 0.73 16 37 H 0.07 1.12 6.59 -51.93 -0.34 0.78 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.40 5.71 6.51 -40.82 -0.27 5.45 16 40 H 0.13 1.39 6.43 -52.49 -0.34 1.06 16 41 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 43 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 44 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 45 H 0.18 2.87 4.96 -52.51 -0.26 2.61 16 46 H 0.04 0.73 6.88 -51.93 -0.36 0.37 16 47 H 0.04 1.00 7.85 -51.93 -0.41 0.59 16 LS Contribution 369.25 15.07 5.56 5.56 Total: -1.00 -30.75 369.25 -10.82 -41.57 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.28 Total: 8.11 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -4.94 Total: -4.60 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.20 Total: -56.40 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.07 Total: -10.20 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.75 -10.82 -41.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034337379.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.423 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds