Wall clock time and date at job start Tue Mar 31 2020 22:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86797 * 119.99927 * 2 1 4 4 H 1.48494 * 109.47145 * 264.98325 * 3 2 1 5 5 H 1.48505 * 109.47422 * 24.98710 * 3 2 1 6 6 H 1.48501 * 109.46847 * 144.98603 * 3 2 1 7 7 C 1.38814 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99308 * 199.78591 * 7 2 1 9 9 N 1.36930 * 120.00176 * 19.78365 * 7 2 1 10 10 C 1.50170 * 120.53753 * 31.15533 * 9 7 2 11 11 C 1.46239 * 107.52883 * 109.61359 * 10 9 7 12 12 C 1.52528 * 114.28208 * 58.40907 * 11 10 9 13 13 C 1.50125 * 105.41464 * 270.59400 * 12 11 10 14 14 C 1.54842 * 110.81440 * 97.68292 * 13 12 11 15 15 H 1.08998 * 109.36141 * 81.19952 * 14 13 12 16 16 N 1.46501 * 109.35404 * 200.93017 * 14 13 12 17 17 C 1.34780 * 119.99712 * 205.27547 * 16 14 13 18 18 O 1.21594 * 120.00112 * 359.97438 * 17 16 14 19 19 C 1.47555 * 120.00033 * 179.97438 * 17 16 14 20 20 C 1.38691 * 120.38695 * 353.98239 * 19 17 16 21 21 C 1.38974 * 120.53767 * 180.02562 * 20 19 17 22 22 C 1.36208 * 121.23611 * 359.96377 * 21 20 19 23 23 C 1.40713 * 120.20119 * 0.27260 * 22 21 20 24 24 N 1.33690 * 120.93772 * 180.24968 * 23 22 21 25 25 C 1.31058 * 121.34145 * 179.78700 * 24 23 22 26 26 C 1.39342 * 121.70827 * 359.70737 * 25 24 23 27 27 C 1.36676 * 119.86901 * 0.02562 * 26 25 24 28 28 C 1.40468 * 118.16980 * 359.97438 * 27 26 25 29 29 C 1.43132 * 120.56503 * 211.11193 * 9 7 2 30 30 H 0.96994 * 119.99409 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.84734 * 350.10899 * 10 9 7 32 32 H 1.08998 * 109.85023 * 229.11756 * 10 9 7 33 33 H 1.09000 * 108.52648 * 297.16981 * 11 10 9 34 34 H 1.09000 * 108.40404 * 179.56603 * 11 10 9 35 35 H 1.08999 * 110.25428 * 151.61463 * 12 11 10 36 36 H 1.09010 * 110.24507 * 29.56745 * 12 11 10 37 37 H 1.08996 * 109.20883 * 337.33723 * 13 12 11 38 38 H 1.08999 * 109.16917 * 217.99686 * 13 12 11 39 39 H 0.97002 * 120.00629 * 25.26952 * 16 14 13 40 40 H 1.08001 * 119.72814 * 0.02969 * 20 19 17 41 41 H 1.08001 * 119.37812 * 179.97438 * 21 20 19 42 42 H 1.08001 * 119.89868 * 179.97438 * 22 21 20 43 43 H 1.08001 * 119.15072 * 179.73060 * 25 24 23 44 44 H 1.08003 * 120.06960 * 179.97438 * 26 25 24 45 45 H 1.07994 * 120.91766 * 179.97438 * 27 26 25 46 46 H 1.08998 * 108.13151 * 149.79912 * 29 9 7 47 47 H 1.08996 * 107.99399 * 33.33361 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6038 1.9852 -1.3946 5 1 1.3988 2.6810 0.5914 6 1 3.4908 1.4730 0.8033 7 6 2.0103 -1.2022 0.0005 8 1 3.0425 -1.2296 0.3172 9 7 1.3862 -2.3532 -0.4003 10 6 0.3044 -2.3120 -1.4410 11 6 0.8390 -2.9243 -2.6566 12 6 1.3139 -4.3627 -2.4778 13 6 2.7568 -4.2595 -2.0761 14 6 2.9094 -4.3709 -0.5393 15 1 2.8843 -5.4212 -0.2488 16 7 4.1901 -3.7857 -0.1349 17 6 4.7853 -4.1890 1.0051 18 8 4.2591 -5.0383 1.6981 19 6 6.0755 -3.6000 1.4121 20 6 6.7437 -2.7241 0.5697 21 6 7.9593 -2.1679 0.9497 22 6 8.5263 -2.4637 2.1523 23 6 7.8866 -3.3513 3.0372 24 7 8.4274 -3.6481 4.2233 25 6 7.8364 -4.4705 5.0552 26 6 6.6164 -5.0702 4.7496 27 6 6.0076 -4.8045 3.5550 28 6 6.6456 -3.9223 2.6674 29 6 1.7547 -3.6156 0.1647 30 1 -0.4849 0.8400 -0.0004 31 1 0.0222 -1.2782 -1.6407 32 1 -0.5636 -2.8731 -1.0950 33 1 1.6785 -2.3236 -3.0067 34 1 0.0615 -2.9088 -3.4204 35 1 1.2216 -4.9100 -3.4159 36 1 0.7383 -4.8553 -1.6939 37 1 3.1534 -3.2999 -2.4073 38 1 3.3189 -5.0633 -2.5515 39 1 4.6098 -3.1079 -0.6876 40 1 6.3159 -2.4721 -0.3894 41 1 8.4638 -1.4883 0.2788 42 1 9.4720 -2.0194 2.4255 43 1 8.3071 -4.6888 6.0025 44 1 6.1530 -5.7443 5.4548 45 1 5.0622 -5.2602 3.3006 46 1 0.8750 -4.2592 0.1597 47 1 2.0411 -3.4490 1.2031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034337379.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:26 Heat of formation + Delta-G solvation = 34.105661 kcal Electronic energy + Delta-G solvation = -29869.482523 eV Core-core repulsion = 26017.193684 eV Total energy + Delta-G solvation = -3852.288839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.09214 -40.72285 -39.30952 -37.90961 -35.96582 -35.01558 -34.32021 -32.85616 -32.20568 -31.54857 -30.62145 -27.99513 -26.20931 -25.39222 -24.95731 -24.43903 -23.93751 -21.97837 -21.21693 -20.83405 -19.26786 -18.62115 -18.45593 -17.84854 -17.24747 -17.00477 -16.79889 -16.51244 -16.01152 -15.74207 -15.68957 -15.44027 -15.18588 -14.87991 -14.74921 -14.30666 -14.12249 -14.02933 -13.69991 -13.43764 -13.31335 -13.06310 -13.02557 -12.75521 -12.69760 -12.55748 -12.36500 -12.33198 -11.97035 -11.64089 -11.51794 -11.48555 -11.25484 -11.19471 -11.04253 -10.53519 -10.25527 -10.10082 -9.82858 -9.32420 -8.54114 -7.84283 -5.31829 -0.88809 -0.20454 0.68807 1.45848 1.47330 1.54290 1.65978 2.11370 2.27489 2.51975 3.10397 3.26798 3.30342 3.54733 3.61589 3.73652 3.81596 3.86209 3.91832 4.06616 4.11781 4.15440 4.31748 4.41275 4.44068 4.49884 4.53490 4.61028 4.76533 4.78839 4.79485 4.90776 5.01386 5.03738 5.14458 5.17352 5.23527 5.26311 5.30784 5.33365 5.43211 5.51943 5.56808 5.68419 5.69179 5.74040 5.79522 5.83435 6.46000 6.56797 6.84450 7.15369 7.21890 7.89425 8.43366 9.20195 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011684 B = 0.003834 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.879187 B = 7302.030523 C = 8384.165946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.046 4.046 3 Si 0.954 3.046 4 H -0.278 1.278 5 H -0.302 1.302 6 H -0.274 1.274 7 C -0.245 4.245 8 H 0.061 0.939 9 N -0.589 5.589 10 C 0.151 3.849 11 C -0.125 4.125 12 C -0.104 4.104 13 C -0.102 4.102 14 C 0.127 3.873 15 H 0.081 0.919 16 N -0.692 5.692 17 C 0.555 3.445 18 O -0.574 6.574 19 C -0.136 4.136 20 C -0.066 4.066 21 C -0.104 4.104 22 C -0.072 4.072 23 C 0.095 3.905 24 N -0.495 5.495 25 C 0.129 3.871 26 C -0.172 4.172 27 C -0.088 4.088 28 C -0.087 4.087 29 C 0.155 3.845 30 H 0.248 0.752 31 H 0.067 0.933 32 H 0.008 0.992 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.406 0.594 40 H 0.154 0.846 41 H 0.176 0.824 42 H 0.160 0.840 43 H 0.197 0.803 44 H 0.166 0.834 45 H 0.160 0.840 46 H 0.034 0.966 47 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.398 -8.880 -1.209 17.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.241 4.241 3 Si 0.783 3.217 4 H -0.204 1.204 5 H -0.229 1.229 6 H -0.199 1.199 7 C -0.375 4.375 8 H 0.079 0.921 9 N -0.310 5.310 10 C 0.028 3.972 11 C -0.164 4.164 12 C -0.142 4.142 13 C -0.140 4.140 14 C 0.020 3.980 15 H 0.099 0.901 16 N -0.341 5.341 17 C 0.344 3.656 18 O -0.456 6.456 19 C -0.140 4.140 20 C -0.085 4.085 21 C -0.123 4.123 22 C -0.091 4.091 23 C -0.026 4.026 24 N -0.203 5.203 25 C -0.044 4.044 26 C -0.192 4.192 27 C -0.114 4.114 28 C -0.089 4.089 29 C 0.026 3.974 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.243 0.757 40 H 0.171 0.829 41 H 0.193 0.807 42 H 0.177 0.823 43 H 0.213 0.787 44 H 0.183 0.817 45 H 0.177 0.823 46 H 0.052 0.948 47 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 15.696 -8.872 -0.623 18.040 hybrid contribution -0.903 0.980 0.016 1.333 sum 14.793 -7.892 -0.606 16.777 Atomic orbital electron populations 1.70169 1.06660 1.25621 1.54952 1.25685 0.95723 1.01174 1.01567 0.85490 0.78050 0.80233 0.77954 1.20414 1.22913 1.19894 1.19248 0.93463 0.86227 1.38600 0.92140 1.43987 1.41646 1.01300 1.44093 1.20245 0.88869 1.00363 0.87735 1.20901 1.00754 0.96559 0.98161 1.20940 0.95517 0.96110 1.01660 1.21613 0.97783 1.02355 0.92220 1.22629 0.82690 0.96702 0.96010 0.90113 1.45901 1.22664 1.42134 1.23386 1.18364 0.84631 0.81583 0.81062 1.90505 1.67074 1.34987 1.53060 1.19955 0.95809 1.02165 0.96028 1.21823 0.94805 0.92506 0.99351 1.21237 0.94651 0.99652 0.96797 1.21319 1.00487 0.94693 0.92552 1.19203 0.91924 0.98046 0.93434 1.68091 1.34239 1.15292 1.02725 1.23612 0.91893 0.89948 0.98924 1.22378 0.97132 1.01970 0.97711 1.22658 1.01088 0.94262 0.93366 1.18859 0.95996 0.99058 0.95013 1.20624 0.95023 0.87967 0.93797 0.94299 0.91526 0.97334 0.93022 0.92571 0.89390 0.92336 0.91594 0.90577 0.75689 0.82894 0.80688 0.82272 0.78662 0.81667 0.82339 0.94787 0.97804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.70 11.27 21.65 0.24 -53.46 16 2 C -0.05 -2.47 4.93 84.86 0.42 -2.06 16 3 Si 0.95 43.61 29.60 68.60 2.03 45.64 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 7 C -0.25 -12.77 9.54 84.04 0.80 -11.97 16 8 H 0.06 3.12 7.90 -2.91 -0.02 3.09 16 9 N -0.59 -27.82 2.56 -708.54 -1.81 -29.64 16 10 C 0.15 6.80 5.36 83.58 0.45 7.25 16 11 C -0.13 -4.28 5.20 28.36 0.15 -4.13 16 12 C -0.10 -2.91 5.76 29.51 0.17 -2.74 16 13 C -0.10 -2.78 5.23 30.30 0.16 -2.62 16 14 C 0.13 4.21 2.92 46.27 0.14 4.34 16 15 H 0.08 2.69 7.57 -2.39 -0.02 2.67 16 16 N -0.69 -21.87 5.03 -439.61 -2.21 -24.09 16 17 C 0.55 19.19 7.57 86.70 0.66 19.85 16 18 O -0.57 -22.78 13.07 -4.01 -0.05 -22.83 16 19 C -0.14 -4.15 5.90 -19.89 -0.12 -4.26 16 20 C -0.07 -1.54 9.51 22.55 0.21 -1.32 16 21 C -0.10 -1.98 9.92 21.97 0.22 -1.76 16 22 C -0.07 -1.58 9.96 22.40 0.22 -1.36 16 23 C 0.09 2.67 6.60 40.28 0.27 2.94 16 24 N -0.50 -13.17 10.34 -188.67 -1.95 -15.12 16 25 C 0.13 2.78 11.15 85.07 0.95 3.73 16 26 C -0.17 -4.00 10.03 22.17 0.22 -3.78 16 27 C -0.09 -2.71 9.29 22.45 0.21 -2.50 16 28 C -0.09 -2.72 5.76 -21.10 -0.12 -2.84 16 29 C 0.16 6.59 4.76 87.65 0.42 7.01 16 30 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 31 H 0.07 3.46 5.66 -2.39 -0.01 3.44 16 32 H 0.01 0.39 8.12 -2.39 -0.02 0.37 16 33 H 0.05 1.83 6.93 -2.39 -0.02 1.82 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.06 1.75 6.28 -2.38 -0.01 1.74 16 37 H 0.07 1.92 6.59 -2.39 -0.02 1.90 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.41 11.21 6.51 -92.71 -0.60 10.61 16 40 H 0.15 2.83 6.43 -2.91 -0.02 2.81 16 41 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 42 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 43 H 0.20 2.50 8.06 -2.91 -0.02 2.47 16 44 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 45 H 0.16 5.49 4.96 -3.18 -0.02 5.47 16 46 H 0.03 1.42 6.88 -2.39 -0.02 1.41 16 47 H 0.00 0.18 7.85 -2.39 -0.02 0.16 16 Total: -1.00 -70.51 369.25 2.07 -68.44 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.40 Total: 27.29 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 5.41 Total: 3.76 kcal Atomic # 7 Polarization: -116.57 SS G_CDS: -5.73 Total: -122.30 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.05 Total: -22.83 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -70.51 2.07 -68.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034337379.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.549 kcal (2) G-P(sol) polarization free energy of solvation -70.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds