Wall clock time and date at job start Tue Mar 31 2020 22:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00455 * 2 1 4 4 H 1.48494 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47014 * 239.99611 * 3 2 1 6 6 H 1.48496 * 109.47313 * 119.99639 * 3 2 1 7 7 C 1.38819 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99723 * 139.29933 * 7 2 1 9 9 N 1.36931 * 120.00300 * 319.30052 * 7 2 1 10 10 C 1.50172 * 120.53516 * 352.84705 * 9 7 2 11 11 C 1.46237 * 107.53509 * 109.56592 * 10 9 7 12 12 C 1.52533 * 114.27420 * 58.40495 * 11 10 9 13 13 C 1.50120 * 105.41491 * 270.59638 * 12 11 10 14 14 C 1.54842 * 110.81478 * 97.68551 * 13 12 11 15 15 H 1.09006 * 109.35980 * 81.34092 * 14 13 12 16 16 N 1.46504 * 109.35713 * 200.92560 * 14 13 12 17 17 C 1.34777 * 119.99983 * 205.00095 * 16 14 13 18 18 O 1.21566 * 119.99788 * 0.02562 * 17 16 14 19 19 C 1.47771 * 120.00248 * 179.97438 * 17 16 14 20 20 C 1.40656 * 119.69938 * 0.02562 * 19 17 16 21 21 C 1.35847 * 120.87947 * 179.97438 * 20 19 17 22 22 C 1.40390 * 119.84490 * 0.02562 * 21 20 19 23 23 C 1.40644 * 121.97813 * 180.02562 * 22 21 20 24 24 C 1.36221 * 118.72856 * 179.97438 * 23 22 21 25 25 N 1.32591 * 121.90199 * 0.02562 * 24 23 22 26 26 C 1.31236 * 122.74340 * 0.02562 * 25 24 23 27 27 C 1.40546 * 119.88654 * 359.97438 * 26 25 24 28 28 C 1.38563 * 119.70659 * 179.72578 * 19 17 16 29 29 C 1.43434 * 120.54010 * 172.56815 * 9 7 2 30 30 H 0.97000 * 120.00306 * 173.66020 * 1 2 3 31 31 H 1.09003 * 109.84670 * 229.07541 * 10 9 7 32 32 H 1.09005 * 109.84636 * 349.99197 * 10 9 7 33 33 H 1.08992 * 108.52313 * 179.64771 * 11 10 9 34 34 H 1.09001 * 108.52386 * 297.32840 * 11 10 9 35 35 H 1.09001 * 110.24926 * 29.57270 * 12 11 10 36 36 H 1.08995 * 110.24603 * 151.47610 * 12 11 10 37 37 H 1.09009 * 109.20655 * 218.02864 * 13 12 11 38 38 H 1.08999 * 109.21295 * 337.33997 * 13 12 11 39 39 H 0.97001 * 119.99999 * 24.99789 * 16 14 13 40 40 H 1.07998 * 119.56056 * 359.97438 * 20 19 17 41 41 H 1.07998 * 120.07398 * 180.02562 * 21 20 19 42 42 H 1.08000 * 120.63246 * 359.96174 * 23 22 21 43 43 H 1.08002 * 119.04422 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.05836 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.33993 * 0.02562 * 28 19 17 46 46 H 1.09007 * 108.15424 * 33.30548 * 29 9 7 47 47 H 1.08997 * 108.16212 * 149.87211 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.8943 -1.3157 -0.6094 9 7 1.5739 -2.2444 0.7743 10 6 0.4447 -2.0530 1.7456 11 6 -0.7130 -2.7782 1.2239 12 6 -0.4753 -4.2700 1.0125 13 6 0.0458 -4.3962 -0.3897 14 6 1.5914 -4.4893 -0.3961 15 1 1.8927 -5.5132 -0.1745 16 7 2.0951 -4.1134 -1.7195 17 6 3.2892 -4.5740 -2.1418 18 8 3.9481 -5.3017 -1.4248 19 6 3.7971 -4.1954 -3.4769 20 6 3.0292 -3.3535 -4.3015 21 6 3.4732 -2.9899 -5.5328 22 6 4.7137 -3.4576 -5.9945 23 6 5.2168 -3.1092 -7.2608 24 6 6.4288 -3.6005 -7.6417 25 7 7.1420 -4.3942 -6.8546 26 6 6.7362 -4.7619 -5.6620 27 6 5.4983 -4.3099 -5.1732 28 6 5.0282 -4.6678 -3.9026 29 6 2.1839 -3.5380 0.6659 30 1 -0.4850 -0.8349 -0.0928 31 1 0.7234 -2.4530 2.7206 32 1 0.2089 -0.9925 1.8346 33 1 -1.5417 -2.6551 1.9211 34 1 -0.9968 -2.3364 0.2688 35 1 0.2634 -4.6389 1.7241 36 1 -1.4100 -4.8200 1.1209 37 1 -0.3695 -5.2943 -0.8472 38 1 -0.2633 -3.5249 -0.9671 39 1 1.5691 -3.5331 -2.2918 40 1 2.0740 -2.9913 -3.9511 41 1 2.8731 -2.3425 -6.1551 42 1 4.6528 -2.4646 -7.9187 43 1 6.8202 -3.3358 -8.6130 44 1 7.3527 -5.4099 -5.0568 45 1 5.6164 -5.3104 -3.2642 46 1 3.2404 -3.3972 0.4372 47 1 2.1146 -4.0288 1.6366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034475318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:45 Heat of formation + Delta-G solvation = 50.752192 kcal Electronic energy + Delta-G solvation = -29542.847275 eV Core-core repulsion = 25691.280284 eV Total energy + Delta-G solvation = -3851.566991 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.02472 -39.65171 -38.15632 -36.94656 -34.58161 -33.38793 -33.13588 -31.78479 -31.01165 -30.08270 -29.63287 -26.24282 -25.01306 -24.11955 -23.94495 -22.86568 -22.31661 -20.95990 -20.20277 -19.37160 -18.15876 -17.84674 -17.16572 -16.80185 -15.93677 -15.60815 -15.24043 -15.19194 -14.74415 -14.58539 -14.28023 -14.06444 -13.81730 -13.71785 -13.66649 -13.53096 -13.23824 -12.74987 -12.44032 -12.26090 -12.12736 -11.99755 -11.85234 -11.40904 -11.11201 -10.90941 -10.62259 -10.46481 -10.36613 -10.21958 -10.06499 -9.87095 -9.83844 -9.77182 -9.55487 -9.48596 -9.27938 -8.77917 -8.27294 -8.17238 -7.00639 -6.21720 -3.06422 0.07613 0.57165 1.65723 2.52900 3.40249 3.47696 3.51026 3.55925 3.71117 3.97205 4.18558 4.35027 4.51039 4.56971 4.59588 4.79619 4.87918 5.01234 5.04101 5.10505 5.16405 5.26676 5.36181 5.38312 5.50912 5.60976 5.63048 5.74756 5.80189 5.89509 5.93958 5.97321 6.15010 6.18907 6.20932 6.29674 6.33630 6.40682 6.54590 6.56350 6.63677 6.64259 6.81728 6.86357 7.01063 7.19333 7.21147 7.73822 7.86260 7.97471 8.48486 8.52365 9.03166 9.81096 10.25928 11.08610 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012543 B = 0.003411 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.746633 B = 8207.794258 C = 9548.034522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.014 4.014 3 Si 1.033 2.967 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.353 4.353 8 H 0.063 0.937 9 N -0.586 5.586 10 C 0.129 3.871 11 C -0.135 4.135 12 C -0.110 4.110 13 C -0.112 4.112 14 C 0.114 3.886 15 H 0.077 0.923 16 N -0.695 5.695 17 C 0.553 3.447 18 O -0.549 6.549 19 C -0.125 4.125 20 C -0.065 4.065 21 C -0.119 4.119 22 C -0.010 4.010 23 C -0.159 4.159 24 C 0.079 3.921 25 N -0.494 5.494 26 C 0.157 3.843 27 C -0.123 4.123 28 C -0.023 4.023 29 C 0.153 3.847 30 H 0.273 0.727 31 H 0.024 0.976 32 H 0.095 0.905 33 H 0.040 0.960 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.399 0.601 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.153 0.847 44 H 0.166 0.834 45 H 0.148 0.852 46 H 0.042 0.958 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.705 -8.736 -10.420 14.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.216 4.216 3 Si 0.863 3.137 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.480 4.480 8 H 0.081 0.919 9 N -0.308 5.308 10 C 0.005 3.995 11 C -0.174 4.174 12 C -0.148 4.148 13 C -0.150 4.150 14 C 0.006 3.994 15 H 0.095 0.905 16 N -0.344 5.344 17 C 0.340 3.660 18 O -0.429 6.429 19 C -0.128 4.128 20 C -0.084 4.084 21 C -0.137 4.137 22 C -0.015 4.015 23 C -0.178 4.178 24 C -0.064 4.064 25 N -0.202 5.202 26 C -0.015 4.015 27 C -0.125 4.125 28 C -0.044 4.044 29 C 0.023 3.977 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.113 0.887 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.234 0.766 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.170 0.830 44 H 0.183 0.817 45 H 0.165 0.835 46 H 0.060 0.940 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.763 -7.759 -10.256 13.714 hybrid contribution -0.973 -0.908 -0.256 1.355 sum 3.790 -8.667 -10.512 14.142 Atomic orbital electron populations 1.70877 1.07183 1.30580 1.45653 1.25365 0.95756 1.00519 0.99993 0.83988 0.75727 0.77566 0.76378 1.21341 1.22267 1.22285 1.19883 1.09248 0.92461 1.26448 0.91888 1.44368 1.38942 1.05007 1.42450 1.20600 0.86857 1.01580 0.90463 1.21093 0.99434 0.94527 1.02376 1.20942 0.99872 0.97479 0.96538 1.21671 0.94147 1.01152 0.98018 1.22836 0.93619 0.99481 0.83443 0.90529 1.45939 1.19679 1.49857 1.18937 1.18079 0.81681 0.80523 0.85750 1.90735 1.57310 1.38093 1.56775 1.20101 0.96329 1.00898 0.95492 1.21145 0.99478 0.94451 0.93359 1.20863 0.95194 1.00954 0.96668 1.18293 0.94419 0.94894 0.93887 1.21934 0.97928 1.01911 0.96056 1.22216 0.91537 0.93605 0.99051 1.67464 1.35006 1.12463 1.05297 1.23297 0.91776 0.94798 0.91587 1.18998 0.97133 1.00651 0.95711 1.21421 0.93976 0.95618 0.93348 1.20617 0.96261 0.86212 0.94636 0.91395 0.95785 0.88738 0.94158 0.91065 0.91702 0.92581 0.93593 0.91028 0.76580 0.84869 0.84542 0.84328 0.83005 0.81678 0.83463 0.94024 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.47 11.99 55.49 0.67 -23.81 16 2 C -0.01 -0.37 4.53 -17.43 -0.08 -0.45 16 3 Si 1.03 24.22 30.06 -169.99 -5.11 19.11 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.30 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.35 -9.07 9.46 -15.06 -0.14 -9.21 16 8 H 0.06 1.70 8.05 -52.48 -0.42 1.28 16 9 N -0.59 -13.44 2.62 -175.40 -0.46 -13.90 16 10 C 0.13 2.79 5.22 -5.20 -0.03 2.76 16 11 C -0.14 -2.52 4.96 -30.18 -0.15 -2.67 16 12 C -0.11 -1.75 5.76 -28.40 -0.16 -1.92 16 13 C -0.11 -1.80 5.23 -27.19 -0.14 -1.95 16 14 C 0.11 2.00 2.91 -66.23 -0.19 1.81 16 15 H 0.08 1.35 7.57 -51.93 -0.39 0.95 16 16 N -0.70 -11.74 5.03 -53.12 -0.27 -12.01 16 17 C 0.55 9.55 7.58 -12.36 -0.09 9.46 16 18 O -0.55 -10.90 15.96 5.31 0.08 -10.81 16 19 C -0.13 -1.83 5.87 -104.97 -0.62 -2.45 16 20 C -0.06 -0.83 9.44 -39.53 -0.37 -1.21 16 21 C -0.12 -1.36 9.77 -39.63 -0.39 -1.75 16 22 C -0.01 -0.11 5.75 -106.74 -0.61 -0.73 16 23 C -0.16 -1.56 9.87 -39.40 -0.39 -1.95 16 24 C 0.08 0.79 11.07 -17.95 -0.20 0.59 16 25 N -0.49 -5.81 10.30 -13.12 -0.14 -5.94 16 26 C 0.16 1.74 11.05 -16.94 -0.19 1.55 16 27 C -0.12 -1.51 5.74 -106.87 -0.61 -2.12 16 28 C -0.02 -0.30 9.37 -38.75 -0.36 -0.66 16 29 C 0.15 3.14 4.75 -4.93 -0.02 3.12 16 30 H 0.27 7.17 4.95 -40.82 -0.20 6.96 16 31 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.09 2.34 5.61 -51.93 -0.29 2.05 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.49 4.65 -51.93 -0.24 1.25 16 35 H 0.06 1.03 6.28 -51.93 -0.33 0.71 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.07 1.29 6.58 -51.93 -0.34 0.95 16 39 H 0.40 6.37 6.42 -40.82 -0.26 6.11 16 40 H 0.13 1.61 6.34 -52.49 -0.33 1.27 16 41 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 42 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 43 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.15 1.82 7.61 -52.48 -0.40 1.43 16 46 H 0.04 0.95 7.81 -51.93 -0.41 0.55 16 47 H 0.04 0.75 6.89 -51.93 -0.36 0.39 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -30.54 369.14 -10.57 -41.11 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.15 Total: 8.46 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -4.76 Total: -7.77 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.20 Total: -55.66 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -5.11 Total: 19.11 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.54 -10.57 -41.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034475318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.863 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds