Wall clock time and date at job start Tue Mar 31 2020 22:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00455 * 2 1 4 4 H 1.48494 * 109.46784 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47014 * 239.99611 * 3 2 1 6 6 H 1.48496 * 109.47313 * 119.99639 * 3 2 1 7 7 C 1.38819 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99723 * 139.29933 * 7 2 1 9 9 N 1.36931 * 120.00300 * 319.30052 * 7 2 1 10 10 C 1.50172 * 120.53516 * 352.84705 * 9 7 2 11 11 C 1.46237 * 107.53509 * 109.56592 * 10 9 7 12 12 C 1.52533 * 114.27420 * 58.40495 * 11 10 9 13 13 C 1.50120 * 105.41491 * 270.59638 * 12 11 10 14 14 C 1.54842 * 110.81478 * 97.68551 * 13 12 11 15 15 H 1.09006 * 109.35980 * 81.34092 * 14 13 12 16 16 N 1.46504 * 109.35713 * 200.92560 * 14 13 12 17 17 C 1.34777 * 119.99983 * 205.00095 * 16 14 13 18 18 O 1.21566 * 119.99788 * 0.02562 * 17 16 14 19 19 C 1.47771 * 120.00248 * 179.97438 * 17 16 14 20 20 C 1.40656 * 119.69938 * 0.02562 * 19 17 16 21 21 C 1.35847 * 120.87947 * 179.97438 * 20 19 17 22 22 C 1.40390 * 119.84490 * 0.02562 * 21 20 19 23 23 C 1.40644 * 121.97813 * 180.02562 * 22 21 20 24 24 C 1.36221 * 118.72856 * 179.97438 * 23 22 21 25 25 N 1.32591 * 121.90199 * 0.02562 * 24 23 22 26 26 C 1.31236 * 122.74340 * 0.02562 * 25 24 23 27 27 C 1.40546 * 119.88654 * 359.97438 * 26 25 24 28 28 C 1.38563 * 119.70659 * 179.72578 * 19 17 16 29 29 C 1.43434 * 120.54010 * 172.56815 * 9 7 2 30 30 H 0.97000 * 120.00306 * 173.66020 * 1 2 3 31 31 H 1.09003 * 109.84670 * 229.07541 * 10 9 7 32 32 H 1.09005 * 109.84636 * 349.99197 * 10 9 7 33 33 H 1.08992 * 108.52313 * 179.64771 * 11 10 9 34 34 H 1.09001 * 108.52386 * 297.32840 * 11 10 9 35 35 H 1.09001 * 110.24926 * 29.57270 * 12 11 10 36 36 H 1.08995 * 110.24603 * 151.47610 * 12 11 10 37 37 H 1.09009 * 109.20655 * 218.02864 * 13 12 11 38 38 H 1.08999 * 109.21295 * 337.33997 * 13 12 11 39 39 H 0.97001 * 119.99999 * 24.99789 * 16 14 13 40 40 H 1.07998 * 119.56056 * 359.97438 * 20 19 17 41 41 H 1.07998 * 120.07398 * 180.02562 * 21 20 19 42 42 H 1.08000 * 120.63246 * 359.96174 * 23 22 21 43 43 H 1.08002 * 119.04422 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.05836 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.33993 * 0.02562 * 28 19 17 46 46 H 1.09007 * 108.15424 * 33.30548 * 29 9 7 47 47 H 1.08997 * 108.16212 * 149.87211 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1041 1.6962 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.8943 -1.3157 -0.6094 9 7 1.5739 -2.2444 0.7743 10 6 0.4447 -2.0530 1.7456 11 6 -0.7130 -2.7782 1.2239 12 6 -0.4753 -4.2700 1.0125 13 6 0.0458 -4.3962 -0.3897 14 6 1.5914 -4.4893 -0.3961 15 1 1.8927 -5.5132 -0.1745 16 7 2.0951 -4.1134 -1.7195 17 6 3.2892 -4.5740 -2.1418 18 8 3.9481 -5.3017 -1.4248 19 6 3.7971 -4.1954 -3.4769 20 6 3.0292 -3.3535 -4.3015 21 6 3.4732 -2.9899 -5.5328 22 6 4.7137 -3.4576 -5.9945 23 6 5.2168 -3.1092 -7.2608 24 6 6.4288 -3.6005 -7.6417 25 7 7.1420 -4.3942 -6.8546 26 6 6.7362 -4.7619 -5.6620 27 6 5.4983 -4.3099 -5.1732 28 6 5.0282 -4.6678 -3.9026 29 6 2.1839 -3.5380 0.6659 30 1 -0.4850 -0.8349 -0.0928 31 1 0.7234 -2.4530 2.7206 32 1 0.2089 -0.9925 1.8346 33 1 -1.5417 -2.6551 1.9211 34 1 -0.9968 -2.3364 0.2688 35 1 0.2634 -4.6389 1.7241 36 1 -1.4100 -4.8200 1.1209 37 1 -0.3695 -5.2943 -0.8472 38 1 -0.2633 -3.5249 -0.9671 39 1 1.5691 -3.5331 -2.2918 40 1 2.0740 -2.9913 -3.9511 41 1 2.8731 -2.3425 -6.1551 42 1 4.6528 -2.4646 -7.9187 43 1 6.8202 -3.3358 -8.6130 44 1 7.3527 -5.4099 -5.0568 45 1 5.6164 -5.3104 -3.2642 46 1 3.2404 -3.3972 0.4372 47 1 2.1146 -4.0288 1.6366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034475318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:44 Heat of formation + Delta-G solvation = 33.989462 kcal Electronic energy + Delta-G solvation = -29543.574161 eV Core-core repulsion = 25691.280284 eV Total energy + Delta-G solvation = -3852.293878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.97112 -40.96782 -39.62635 -37.98770 -36.15768 -34.95886 -34.03409 -33.15738 -32.53518 -31.36810 -30.68088 -27.90817 -26.32953 -25.34069 -24.97657 -24.47950 -23.28869 -22.37136 -21.61076 -20.90828 -19.31358 -19.02087 -18.76035 -17.83533 -17.14652 -16.85033 -16.68282 -16.29267 -16.11289 -15.96153 -15.57422 -15.38970 -15.20049 -14.99401 -14.86569 -14.56982 -14.32976 -14.26902 -13.94709 -13.79597 -13.48144 -13.07319 -12.91659 -12.75883 -12.53532 -12.45128 -12.33256 -12.17086 -11.94376 -11.75489 -11.54334 -11.28599 -11.26743 -11.18156 -11.06317 -10.54192 -10.40583 -10.23827 -9.99524 -9.14994 -8.85295 -8.26350 -5.06435 -0.84047 -0.37153 0.74663 1.48422 1.58025 1.64325 1.83099 2.16096 2.34272 2.66949 3.02632 3.14467 3.42208 3.45880 3.48421 3.60486 3.62570 3.79773 3.84041 3.96820 4.00695 4.02718 4.22311 4.26766 4.38901 4.43740 4.47558 4.60458 4.64488 4.68146 4.72604 4.75105 4.87685 4.90768 4.92909 5.06669 5.12161 5.15336 5.16438 5.27666 5.30107 5.39669 5.49309 5.55045 5.61023 5.63018 5.68049 5.92809 6.49586 6.53960 6.91733 7.10788 7.16599 7.87848 8.32904 9.06554 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012543 B = 0.003411 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.746633 B = 8207.794258 C = 9548.034522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.050 4.050 3 Si 1.074 2.926 4 H -0.292 1.292 5 H -0.286 1.286 6 H -0.295 1.295 7 C -0.350 4.350 8 H 0.043 0.957 9 N -0.597 5.597 10 C 0.131 3.869 11 C -0.127 4.127 12 C -0.102 4.102 13 C -0.103 4.103 14 C 0.121 3.879 15 H 0.081 0.919 16 N -0.695 5.695 17 C 0.551 3.449 18 O -0.582 6.582 19 C -0.148 4.148 20 C -0.078 4.078 21 C -0.110 4.110 22 C -0.023 4.023 23 C -0.155 4.155 24 C 0.074 3.926 25 N -0.511 5.511 26 C 0.152 3.848 27 C -0.135 4.135 28 C -0.021 4.021 29 C 0.157 3.843 30 H 0.272 0.728 31 H 0.036 0.964 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.403 0.597 40 H 0.136 0.864 41 H 0.165 0.835 42 H 0.171 0.829 43 H 0.182 0.818 44 H 0.186 0.814 45 H 0.148 0.852 46 H 0.009 0.991 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.547 -9.193 -12.036 15.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.250 4.250 3 Si 0.903 3.097 4 H -0.218 1.218 5 H -0.212 1.212 6 H -0.223 1.223 7 C -0.479 4.479 8 H 0.061 0.939 9 N -0.320 5.320 10 C 0.008 3.992 11 C -0.166 4.166 12 C -0.140 4.140 13 C -0.141 4.141 14 C 0.013 3.987 15 H 0.099 0.901 16 N -0.343 5.343 17 C 0.339 3.661 18 O -0.465 6.465 19 C -0.151 4.151 20 C -0.098 4.098 21 C -0.128 4.128 22 C -0.028 4.028 23 C -0.174 4.174 24 C -0.068 4.068 25 N -0.219 5.219 26 C -0.019 4.019 27 C -0.137 4.137 28 C -0.042 4.042 29 C 0.028 3.972 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.239 0.761 40 H 0.153 0.847 41 H 0.183 0.817 42 H 0.188 0.812 43 H 0.199 0.801 44 H 0.203 0.797 45 H 0.166 0.834 46 H 0.027 0.973 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.601 -8.233 -11.881 15.170 hybrid contribution -0.810 -0.790 0.185 1.147 sum 3.791 -9.023 -11.696 15.251 Atomic orbital electron populations 1.70905 1.07600 1.30743 1.47400 1.26120 0.95980 1.02486 1.00407 0.83388 0.74775 0.75016 0.76567 1.21829 1.21241 1.22308 1.19816 1.08170 0.93639 1.26231 0.93937 1.44392 1.39746 1.05448 1.42410 1.20550 0.87608 1.00166 0.90882 1.20929 0.98421 0.96107 1.01190 1.20934 1.01488 0.95459 0.96134 1.21595 0.92610 1.01520 0.98354 1.22628 0.94737 0.98465 0.82858 0.90128 1.45924 1.19801 1.49872 1.18719 1.18526 0.81257 0.79731 0.86552 1.90699 1.58099 1.39643 1.58017 1.19983 0.97494 1.02927 0.94692 1.21184 0.99675 0.94886 0.94055 1.21166 0.95166 1.00345 0.96118 1.18628 0.94574 0.94763 0.94822 1.22265 0.97980 1.01732 0.95415 1.22777 0.91509 0.92633 0.99894 1.67534 1.35670 1.13096 1.05586 1.23626 0.91578 0.94885 0.91775 1.19123 0.97924 1.01277 0.95409 1.21488 0.93504 0.95309 0.93923 1.20593 0.94406 0.85997 0.96222 0.91526 0.94536 0.92038 0.92572 0.93436 0.91428 0.89438 0.90852 0.93019 0.76116 0.84653 0.81720 0.81179 0.80071 0.79701 0.83438 0.97270 0.93247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.92 11.99 21.65 0.26 -50.66 16 2 C -0.05 -2.69 4.53 84.86 0.38 -2.31 16 3 Si 1.07 49.73 30.06 68.60 2.06 51.80 16 4 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 7 C -0.35 -18.42 9.46 84.04 0.80 -17.63 16 8 H 0.04 2.38 8.05 -2.91 -0.02 2.36 16 9 N -0.60 -27.83 2.62 -708.84 -1.86 -29.68 16 10 C 0.13 5.70 5.22 83.58 0.44 6.14 16 11 C -0.13 -4.64 4.96 28.36 0.14 -4.50 16 12 C -0.10 -3.02 5.76 29.51 0.17 -2.85 16 13 C -0.10 -3.17 5.23 30.30 0.16 -3.01 16 14 C 0.12 4.22 2.91 46.09 0.13 4.36 16 15 H 0.08 2.79 7.57 -2.38 -0.02 2.77 16 16 N -0.69 -23.92 5.03 -440.23 -2.21 -26.14 16 17 C 0.55 19.63 7.58 86.76 0.66 20.29 16 18 O -0.58 -23.90 15.96 -3.92 -0.06 -23.96 16 19 C -0.15 -4.43 5.87 -20.09 -0.12 -4.54 16 20 C -0.08 -2.01 9.44 22.31 0.21 -1.80 16 21 C -0.11 -2.35 9.77 22.24 0.22 -2.13 16 22 C -0.02 -0.49 5.75 -21.23 -0.12 -0.62 16 23 C -0.15 -2.58 9.87 22.39 0.22 -2.36 16 24 C 0.07 1.29 11.07 84.11 0.93 2.22 16 25 N -0.51 -11.03 10.30 -195.42 -2.01 -13.04 16 26 C 0.15 3.20 11.05 85.34 0.94 4.15 16 27 C -0.14 -3.22 5.74 -21.32 -0.12 -3.34 16 28 C -0.02 -0.57 9.37 22.81 0.21 -0.36 16 29 C 0.16 6.53 4.75 87.42 0.41 6.94 16 30 H 0.27 14.57 4.95 -92.71 -0.46 14.11 16 31 H 0.04 1.47 8.13 -2.39 -0.02 1.45 16 32 H 0.06 3.09 5.61 -2.38 -0.01 3.08 16 33 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.05 1.99 4.65 -2.39 -0.01 1.98 16 35 H 0.07 1.99 6.28 -2.39 -0.01 1.97 16 36 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.05 1.83 6.58 -2.39 -0.02 1.82 16 39 H 0.40 13.17 6.42 -92.71 -0.60 12.58 16 40 H 0.14 3.30 6.34 -2.91 -0.02 3.28 16 41 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 42 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 43 H 0.18 1.95 8.06 -2.91 -0.02 1.92 16 44 H 0.19 2.88 8.06 -2.91 -0.02 2.86 16 45 H 0.15 3.80 7.61 -2.91 -0.02 3.78 16 46 H 0.01 0.43 7.81 -2.38 -0.02 0.41 16 47 H 0.05 1.91 6.89 -2.39 -0.02 1.89 16 Total: -1.00 -67.25 369.14 2.56 -64.69 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.72 Total: 28.34 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 5.67 Total: -1.35 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -5.83 Total: -119.52 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.06 Total: -23.96 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 2.06 Total: 51.80 kcal Total: -67.25 2.56 -64.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034475318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.682 kcal (2) G-P(sol) polarization free energy of solvation -67.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds