Wall clock time and date at job start Tue Mar 31 2020 22:15:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86793 * 120.00116 * 2 1
4 4 H 1.48497 * 109.47479 * 240.00235 * 3 2 1
5 5 H 1.48496 * 109.47348 * 0.02562 * 3 2 1
6 6 H 1.48507 * 109.47340 * 120.00067 * 3 2 1
7 7 C 1.38820 * 119.99874 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99716 * 179.97438 * 7 2 1
9 9 N 1.36934 * 119.99777 * 359.97438 * 7 2 1
10 10 C 1.46505 * 119.99441 * 179.97438 * 9 7 2
11 11 H 1.08991 * 109.47266 * 35.00044 * 10 9 7
12 12 C 1.53004 * 109.46836 * 154.99963 * 10 9 7
13 13 C 1.53001 * 109.47109 * 179.97438 * 12 10 9
14 14 C 1.52999 * 109.47030 * 300.00096 * 13 12 10
15 15 H 1.09003 * 109.47593 * 300.00031 * 14 13 12
16 16 N 1.46497 * 109.47039 * 180.02562 * 14 13 12
17 17 C 1.34777 * 120.00158 * 155.00117 * 16 14 13
18 18 O 1.21602 * 120.00330 * 359.97438 * 17 16 14
19 19 C 1.47438 * 119.99863 * 179.97438 * 17 16 14
20 20 C 1.38746 * 120.33377 * 0.02562 * 19 17 16
21 21 C 1.38869 * 120.72465 * 179.97438 * 20 19 17
22 22 C 1.36354 * 121.05802 * 359.97353 * 21 20 19
23 23 C 1.40435 * 120.08434 * 0.05111 * 22 21 20
24 24 C 1.40807 * 121.26319 * 179.97438 * 23 22 21
25 25 C 1.36630 * 118.15323 * 179.97438 * 24 23 22
26 26 C 1.39227 * 119.91215 * 359.97438 * 25 24 23
27 27 N 1.31229 * 121.69611 * 359.71570 * 26 25 24
28 28 C 1.33346 * 121.34867 * 0.57063 * 27 26 25
29 29 C 1.53004 * 109.47253 * 59.99992 * 14 13 12
30 30 C 1.52996 * 109.47135 * 299.99621 * 29 14 13
31 31 H 0.96994 * 119.99779 * 359.97438 * 1 2 3
32 32 H 0.96994 * 120.00781 * 0.02562 * 9 7 2
33 33 H 1.09003 * 109.46789 * 60.00240 * 12 10 9
34 34 H 1.08989 * 109.47144 * 300.00293 * 12 10 9
35 35 H 1.08995 * 109.47310 * 180.02562 * 13 12 10
36 36 H 1.08997 * 109.46886 * 59.99624 * 13 12 10
37 37 H 0.97005 * 119.99961 * 334.99446 * 16 14 13
38 38 H 1.07991 * 119.63493 * 359.96151 * 20 19 17
39 39 H 1.07999 * 119.46847 * 180.02562 * 21 20 19
40 40 H 1.08000 * 119.95290 * 179.97438 * 22 21 20
41 41 H 1.07996 * 120.92255 * 359.95283 * 24 23 22
42 42 H 1.08004 * 120.04265 * 180.02562 * 25 24 23
43 43 H 1.08001 * 119.15373 * 179.97438 * 26 25 24
44 44 H 1.08998 * 109.46821 * 60.00031 * 29 14 13
45 45 H 1.08999 * 109.47067 * 180.02562 * 29 14 13
46 46 H 1.09003 * 109.47499 * 300.00392 * 30 29 14
47 47 H 1.08995 * 109.47336 * 179.97438 * 30 29 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.1039 1.6964 -1.2125
5 1 1.2853 2.7464 0.0006
6 1 3.1040 1.6963 1.2125
7 6 2.0102 -1.2022 -0.0005
8 1 3.0903 -1.2022 -0.0010
9 7 1.3255 -2.3881 -0.0005
10 6 2.0581 -3.6568 -0.0017
11 1 2.9692 -3.5508 0.5871
12 6 1.1813 -4.7524 0.6082
13 6 1.9461 -6.0776 0.6064
14 6 2.3083 -6.4555 -0.8312
15 1 1.3970 -6.5612 -1.4198
16 7 3.0400 -7.7246 -0.8329
17 6 3.0298 -8.5070 -1.9304
18 8 2.4128 -8.1596 -2.9190
19 6 3.7667 -9.7840 -1.9322
20 6 4.4725 -10.1873 -0.8079
21 6 5.1690 -11.3887 -0.8005
22 6 5.1782 -12.2032 -1.8941
23 6 4.4774 -11.8330 -3.0534
24 6 4.4705 -12.6548 -4.1968
25 6 3.7673 -12.2330 -5.2896
26 6 3.0837 -11.0208 -5.2499
27 7 3.0883 -10.2614 -4.1796
28 6 3.7596 -10.6130 -3.0824
29 6 3.1851 -5.3599 -1.4411
30 6 2.4203 -4.0347 -1.4394
31 1 -0.4849 0.8400 0.0004
32 1 0.3556 -2.3881 -0.0005
33 1 0.2702 -4.8584 0.0193
34 1 0.9229 -4.4830 1.6321
35 1 1.3214 -6.8582 1.0405
36 1 2.8574 -5.9719 1.1949
37 1 3.5320 -8.0019 -0.0442
38 1 4.4806 -9.5599 0.0711
39 1 5.7113 -11.6830 0.0858
40 1 5.7262 -13.1335 -1.8690
41 1 5.0066 -13.5922 -4.2097
42 1 3.7410 -12.8396 -6.1829
43 1 2.5320 -10.6990 -6.1208
44 1 4.0964 -5.2542 -0.8525
45 1 3.4428 -5.6289 -2.4654
46 1 1.5089 -4.1404 -2.0279
47 1 3.0450 -3.2541 -1.8734
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001034687024.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:15:51
Heat of formation + Delta-G solvation = 26.835346 kcal
Electronic energy + Delta-G solvation = -28228.151903 eV
Core-core repulsion = 24375.547799 eV
Total energy + Delta-G solvation = -3852.604103 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.30046 -39.68111 -37.89069 -37.21858 -34.76987 -33.78272 -32.98586 -31.08809
-30.84096 -30.34266 -30.07067 -27.28070 -24.99152 -24.01290 -23.77982 -23.09966
-22.26078 -21.01111 -20.39248 -19.44404 -18.60431 -18.04196 -17.20941 -16.96453
-16.28746 -15.95860 -15.19617 -15.13357 -15.01721 -14.44641 -14.33797 -14.28603
-13.91424 -13.69297 -13.50514 -13.37831 -13.30839 -12.93860 -12.56367 -12.44310
-12.12906 -11.95978 -11.77745 -11.72695 -11.36197 -11.00485 -10.83675 -10.75666
-10.69008 -10.61344 -10.17445 -10.06489 -10.01943 -9.69301 -9.56884 -9.31543
-9.20480 -8.89920 -8.79188 -8.62161 -6.88943 -5.70744 -2.98929 -0.21825
0.42894 1.40850 2.40008 3.09748 3.14151 3.47594 3.51914 3.52938
3.86413 3.93455 4.15256 4.31371 4.40381 4.50141 4.59155 4.63778
4.70054 4.87633 4.94859 5.07448 5.12222 5.26684 5.34760 5.46882
5.50862 5.57582 5.63056 5.68872 5.74786 5.75759 5.80062 5.89365
5.94114 5.95160 6.05817 6.11471 6.30823 6.34460 6.38285 6.38451
6.56489 6.64276 6.74338 6.80196 7.05786 7.22073 7.53984 7.73239
7.74985 8.33570 8.48289 9.58948 10.18189 10.52811 11.52036
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.024486 B = 0.002016 C = 0.001948
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1143.257295 B =13887.377490 C =14370.299463
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C -0.016 4.016
3 Si 0.906 3.094
4 H -0.286 1.286
5 H -0.292 1.292
6 H -0.287 1.287
7 C -0.236 4.236
8 H 0.069 0.931
9 N -0.726 5.726
10 C 0.177 3.823
11 H 0.046 0.954
12 C -0.120 4.120
13 C -0.118 4.118
14 C 0.148 3.852
15 H 0.088 0.912
16 N -0.726 5.726
17 C 0.550 3.450
18 O -0.495 6.495
19 C -0.104 4.104
20 C -0.065 4.065
21 C -0.126 4.126
22 C -0.073 4.073
23 C -0.112 4.112
24 C -0.060 4.060
25 C -0.175 4.175
26 C 0.132 3.868
27 N -0.436 5.436
28 C 0.161 3.839
29 C -0.123 4.123
30 C -0.132 4.132
31 H 0.255 0.745
32 H 0.383 0.617
33 H 0.062 0.938
34 H 0.067 0.933
35 H 0.062 0.938
36 H 0.065 0.935
37 H 0.393 0.607
38 H 0.135 0.865
39 H 0.135 0.865
40 H 0.134 0.866
41 H 0.140 0.860
42 H 0.138 0.862
43 H 0.161 0.839
44 H 0.057 0.943
45 H 0.058 0.942
46 H 0.056 0.944
47 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.375 -31.548 -3.417 33.710
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.582 5.582
2 C -0.211 4.211
3 Si 0.737 3.263
4 H -0.213 1.213
5 H -0.218 1.218
6 H -0.214 1.214
7 C -0.367 4.367
8 H 0.087 0.913
9 N -0.366 5.366
10 C 0.067 3.933
11 H 0.064 0.936
12 C -0.159 4.159
13 C -0.157 4.157
14 C 0.044 3.956
15 H 0.106 0.894
16 N -0.379 5.379
17 C 0.335 3.665
18 O -0.368 6.368
19 C -0.108 4.108
20 C -0.085 4.085
21 C -0.144 4.144
22 C -0.092 4.092
23 C -0.114 4.114
24 C -0.086 4.086
25 C -0.194 4.194
26 C -0.040 4.040
27 N -0.143 5.143
28 C 0.038 3.962
29 C -0.163 4.163
30 C -0.173 4.173
31 H 0.065 0.935
32 H 0.217 0.783
33 H 0.080 0.920
34 H 0.086 0.914
35 H 0.081 0.919
36 H 0.084 0.916
37 H 0.227 0.773
38 H 0.153 0.847
39 H 0.153 0.847
40 H 0.151 0.849
41 H 0.157 0.843
42 H 0.156 0.844
43 H 0.178 0.822
44 H 0.076 0.924
45 H 0.077 0.923
46 H 0.075 0.925
47 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 10.561 -30.271 -4.024 32.312
hybrid contribution 0.977 -0.071 0.274 1.017
sum 11.538 -30.342 -3.750 32.677
Atomic orbital electron populations
1.69650 1.05070 1.25659 1.57863 1.24740 0.95514 0.97639 1.03254
0.86284 0.78509 0.83706 0.77790 1.21329 1.21759 1.21356 1.19200
0.90922 0.84190 1.42410 0.91307 1.42426 1.05787 0.99799 1.88568
1.20244 0.94257 0.85951 0.92817 0.93639 1.21749 0.98974 0.93463
1.01723 1.21748 1.00768 0.98259 0.94923 1.21090 0.95485 0.81581
0.97405 0.89377 1.46109 1.53811 1.22041 1.15896 1.17908 0.81558
0.83391 0.83647 1.90874 1.41238 1.72448 1.32259 1.20026 1.01222
0.96024 0.93535 1.21473 0.93981 0.96155 0.96915 1.20846 1.00014
0.94406 0.99107 1.21164 0.96758 0.99445 0.91842 1.18847 1.00541
0.96061 0.95959 1.21463 0.96657 0.98673 0.91815 1.21988 0.99202
0.98463 0.99791 1.23231 0.94517 0.90026 0.96262 1.68355 1.15917
1.31330 0.98677 1.18644 0.93732 0.91316 0.92530 1.21895 0.98518
0.95342 1.00514 1.22219 0.99793 0.94512 1.00741 0.93536 0.78309
0.91953 0.91398 0.91907 0.91633 0.77268 0.84690 0.84727 0.84863
0.84258 0.84382 0.82190 0.92413 0.92325 0.92471 0.91870
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -28.67 13.06 55.49 0.72 -27.94 16
2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16
3 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16
4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
5 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16
6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
7 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16
8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16
9 N -0.73 -18.46 5.12 -53.42 -0.27 -18.73 16
10 C 0.18 3.54 2.77 -67.92 -0.19 3.35 16
11 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16
12 C -0.12 -1.97 5.39 -26.73 -0.14 -2.11 16
13 C -0.12 -1.51 5.39 -26.73 -0.14 -1.66 16
14 C 0.15 2.08 2.45 -67.93 -0.17 1.91 16
15 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16
16 N -0.73 -8.65 5.03 -54.88 -0.28 -8.92 16
17 C 0.55 7.91 7.73 -12.51 -0.10 7.81 16
18 O -0.49 -9.20 14.85 5.28 0.08 -9.12 16
19 C -0.10 -1.24 5.91 -104.61 -0.62 -1.86 16
20 C -0.06 -0.51 9.52 -39.16 -0.37 -0.88 16
21 C -0.13 -0.77 9.93 -40.03 -0.40 -1.16 16
22 C -0.07 -0.47 9.75 -39.43 -0.38 -0.86 16
23 C -0.11 -1.02 5.74 -106.82 -0.61 -1.63 16
24 C -0.06 -0.41 9.90 -39.19 -0.39 -0.80 16
25 C -0.17 -1.21 10.03 -39.79 -0.40 -1.61 16
26 C 0.13 1.30 11.15 -17.44 -0.19 1.11 16
27 N -0.44 -6.05 8.44 -10.76 -0.09 -6.14 16
28 C 0.16 2.01 6.61 -84.58 -0.56 1.45 16
29 C -0.12 -1.94 5.50 -26.73 -0.15 -2.09 16
30 C -0.13 -2.49 5.50 -26.73 -0.15 -2.64 16
31 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16
32 H 0.38 10.38 7.80 -40.82 -0.32 10.06 16
33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16
34 H 0.07 1.13 8.14 -51.94 -0.42 0.70 16
35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
37 H 0.39 3.34 6.63 -40.82 -0.27 3.07 16
38 H 0.14 0.70 6.37 -52.49 -0.33 0.36 16
39 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16
40 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16
41 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16
42 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16
43 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16
44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
46 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16
47 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16
LS Contribution 384.06 15.07 5.79 5.79
Total: -1.00 -36.38 384.06 -11.06 -47.44
By element:
Atomic # 1 Polarization: 15.67 SS G_CDS: -6.78 Total: 8.89 kcal
Atomic # 6 Polarization: -3.80 SS G_CDS: -5.21 Total: -9.00 kcal
Atomic # 7 Polarization: -61.82 SS G_CDS: 0.08 Total: -61.74 kcal
Atomic # 8 Polarization: -9.20 SS G_CDS: 0.08 Total: -9.12 kcal
Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal
Total LS contribution 5.79 Total: 5.79 kcal
Total: -36.38 -11.06 -47.44 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001034687024.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.275 kcal
(2) G-P(sol) polarization free energy of solvation -36.383 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.892 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.057 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.440 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.835 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds