Wall clock time and date at job start Tue Mar 31 2020 22:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00116 * 2 1 4 4 H 1.48497 * 109.47479 * 240.00235 * 3 2 1 5 5 H 1.48496 * 109.47348 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47340 * 120.00067 * 3 2 1 7 7 C 1.38820 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99716 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99777 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99441 * 179.97438 * 9 7 2 11 11 H 1.08991 * 109.47266 * 35.00044 * 10 9 7 12 12 C 1.53004 * 109.46836 * 154.99963 * 10 9 7 13 13 C 1.53001 * 109.47109 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47030 * 300.00096 * 13 12 10 15 15 H 1.09003 * 109.47593 * 300.00031 * 14 13 12 16 16 N 1.46497 * 109.47039 * 180.02562 * 14 13 12 17 17 C 1.34777 * 120.00158 * 155.00117 * 16 14 13 18 18 O 1.21602 * 120.00330 * 359.97438 * 17 16 14 19 19 C 1.47438 * 119.99863 * 179.97438 * 17 16 14 20 20 C 1.38746 * 120.33377 * 0.02562 * 19 17 16 21 21 C 1.38869 * 120.72465 * 179.97438 * 20 19 17 22 22 C 1.36354 * 121.05802 * 359.97353 * 21 20 19 23 23 C 1.40435 * 120.08434 * 0.05111 * 22 21 20 24 24 C 1.40807 * 121.26319 * 179.97438 * 23 22 21 25 25 C 1.36630 * 118.15323 * 179.97438 * 24 23 22 26 26 C 1.39227 * 119.91215 * 359.97438 * 25 24 23 27 27 N 1.31229 * 121.69611 * 359.71570 * 26 25 24 28 28 C 1.33346 * 121.34867 * 0.57063 * 27 26 25 29 29 C 1.53004 * 109.47253 * 59.99992 * 14 13 12 30 30 C 1.52996 * 109.47135 * 299.99621 * 29 14 13 31 31 H 0.96994 * 119.99779 * 359.97438 * 1 2 3 32 32 H 0.96994 * 120.00781 * 0.02562 * 9 7 2 33 33 H 1.09003 * 109.46789 * 60.00240 * 12 10 9 34 34 H 1.08989 * 109.47144 * 300.00293 * 12 10 9 35 35 H 1.08995 * 109.47310 * 180.02562 * 13 12 10 36 36 H 1.08997 * 109.46886 * 59.99624 * 13 12 10 37 37 H 0.97005 * 119.99961 * 334.99446 * 16 14 13 38 38 H 1.07991 * 119.63493 * 359.96151 * 20 19 17 39 39 H 1.07999 * 119.46847 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.95290 * 179.97438 * 22 21 20 41 41 H 1.07996 * 120.92255 * 359.95283 * 24 23 22 42 42 H 1.08004 * 120.04265 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.15373 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.46821 * 60.00031 * 29 14 13 45 45 H 1.08999 * 109.47067 * 180.02562 * 29 14 13 46 46 H 1.09003 * 109.47499 * 300.00392 * 30 29 14 47 47 H 1.08995 * 109.47336 * 179.97438 * 30 29 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 2.9692 -3.5508 0.5871 12 6 1.1813 -4.7524 0.6082 13 6 1.9461 -6.0776 0.6064 14 6 2.3083 -6.4555 -0.8312 15 1 1.3970 -6.5612 -1.4198 16 7 3.0400 -7.7246 -0.8329 17 6 3.0298 -8.5070 -1.9304 18 8 2.4128 -8.1596 -2.9190 19 6 3.7667 -9.7840 -1.9322 20 6 4.4725 -10.1873 -0.8079 21 6 5.1690 -11.3887 -0.8005 22 6 5.1782 -12.2032 -1.8941 23 6 4.4774 -11.8330 -3.0534 24 6 4.4705 -12.6548 -4.1968 25 6 3.7673 -12.2330 -5.2896 26 6 3.0837 -11.0208 -5.2499 27 7 3.0883 -10.2614 -4.1796 28 6 3.7596 -10.6130 -3.0824 29 6 3.1851 -5.3599 -1.4411 30 6 2.4203 -4.0347 -1.4394 31 1 -0.4849 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 0.2702 -4.8584 0.0193 34 1 0.9229 -4.4830 1.6321 35 1 1.3214 -6.8582 1.0405 36 1 2.8574 -5.9719 1.1949 37 1 3.5320 -8.0019 -0.0442 38 1 4.4806 -9.5599 0.0711 39 1 5.7113 -11.6830 0.0858 40 1 5.7262 -13.1335 -1.8690 41 1 5.0066 -13.5922 -4.2097 42 1 3.7410 -12.8396 -6.1829 43 1 2.5320 -10.6990 -6.1208 44 1 4.0964 -5.2542 -0.8525 45 1 3.4428 -5.6289 -2.4654 46 1 1.5089 -4.1404 -2.0279 47 1 3.0450 -3.2541 -1.8734 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034687024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:50 Heat of formation + Delta-G solvation = 2.282574 kcal Electronic energy + Delta-G solvation = -28229.216591 eV Core-core repulsion = 24375.547799 eV Total energy + Delta-G solvation = -3853.668792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.97732 -40.74773 -39.18288 -37.88898 -36.34293 -34.70216 -34.34269 -32.57336 -31.70255 -31.48000 -31.10207 -28.81803 -25.89273 -25.39999 -24.42643 -24.24883 -23.59812 -22.32871 -21.42756 -20.84140 -19.27199 -19.13149 -18.69231 -17.86960 -17.11228 -17.02462 -16.73897 -16.16111 -15.82954 -15.66454 -15.40130 -15.23038 -15.12095 -15.03884 -14.86798 -14.51531 -14.13154 -13.95763 -13.85706 -13.44917 -13.15114 -13.09992 -13.02882 -12.80510 -12.70992 -12.42625 -12.33177 -12.26006 -12.17436 -12.04718 -11.65850 -11.48880 -11.45551 -11.20464 -11.03569 -10.82961 -10.12032 -10.02202 -9.79225 -9.26325 -8.99535 -7.92916 -5.21224 -0.81746 -0.15498 0.77113 1.46109 1.49629 1.55459 1.80565 2.11716 2.25909 2.56930 3.17986 3.35515 3.39355 3.55111 3.74876 3.78190 3.82392 3.88815 3.90828 3.99041 4.05735 4.20543 4.29341 4.36402 4.39781 4.43992 4.48554 4.55612 4.58939 4.64696 4.71722 4.85775 4.93277 4.98497 5.00882 5.09896 5.11756 5.14817 5.22507 5.24602 5.27181 5.38370 5.47983 5.53539 5.55081 5.59042 5.63249 5.85585 6.29547 6.62644 7.08401 7.34754 7.35720 8.12465 8.35190 9.30626 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024486 B = 0.002016 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.257295 B =13887.377490 C =14370.299463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.081 4.081 3 Si 0.972 3.028 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.275 1.275 7 C -0.237 4.237 8 H 0.075 0.925 9 N -0.739 5.739 10 C 0.173 3.827 11 H 0.051 0.949 12 C -0.113 4.113 13 C -0.104 4.104 14 C 0.156 3.844 15 H 0.058 0.942 16 N -0.709 5.709 17 C 0.546 3.454 18 O -0.553 6.553 19 C -0.154 4.154 20 C -0.043 4.043 21 C -0.130 4.130 22 C -0.057 4.057 23 C -0.131 4.131 24 C -0.050 4.050 25 C -0.178 4.178 26 C 0.115 3.885 27 N -0.501 5.501 28 C 0.129 3.871 29 C -0.110 4.110 30 C -0.122 4.122 31 H 0.250 0.750 32 H 0.371 0.629 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.413 0.587 38 H 0.162 0.838 39 H 0.175 0.825 40 H 0.174 0.826 41 H 0.182 0.818 42 H 0.173 0.827 43 H 0.167 0.833 44 H 0.078 0.922 45 H 0.040 0.960 46 H 0.035 0.965 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.660 -35.078 -1.419 38.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.273 4.273 3 Si 0.801 3.199 4 H -0.208 1.208 5 H -0.223 1.223 6 H -0.200 1.200 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.378 5.378 10 C 0.065 3.935 11 H 0.069 0.931 12 C -0.152 4.152 13 C -0.142 4.142 14 C 0.051 3.949 15 H 0.076 0.924 16 N -0.363 5.363 17 C 0.334 3.666 18 O -0.431 6.431 19 C -0.157 4.157 20 C -0.063 4.063 21 C -0.147 4.147 22 C -0.075 4.075 23 C -0.134 4.134 24 C -0.076 4.076 25 C -0.197 4.197 26 C -0.056 4.056 27 N -0.209 5.209 28 C 0.006 3.994 29 C -0.150 4.150 30 C -0.163 4.163 31 H 0.059 0.941 32 H 0.202 0.798 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.251 0.749 38 H 0.180 0.820 39 H 0.193 0.807 40 H 0.192 0.808 41 H 0.200 0.800 42 H 0.190 0.810 43 H 0.184 0.816 44 H 0.097 0.903 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 13.908 -33.856 -1.991 36.655 hybrid contribution 0.023 0.875 -0.388 0.957 sum 13.931 -32.981 -2.378 35.881 Atomic orbital electron populations 1.69818 1.06609 1.25987 1.59827 1.25581 0.96408 1.01135 1.04131 0.85223 0.77181 0.79282 0.78169 1.20768 1.22280 1.20046 1.19598 0.91390 0.85305 1.40586 0.90680 1.42674 1.05440 1.01149 1.88573 1.20486 0.94649 0.85033 0.93301 0.93108 1.21640 0.98303 0.94148 1.01105 1.21648 1.01883 0.96597 0.94054 1.20804 0.94178 0.82068 0.97861 0.92376 1.45833 1.53401 1.20761 1.16281 1.18471 0.80790 0.84299 0.83037 1.90833 1.43897 1.73953 1.34403 1.19947 1.04471 0.95655 0.95673 1.21867 0.91584 0.96873 0.95979 1.21321 0.99584 0.93313 1.00504 1.21694 0.94891 1.00500 0.90463 1.19198 1.00811 0.95307 0.98045 1.21994 0.95599 0.99429 0.90575 1.22278 0.98519 0.97486 1.01431 1.23590 0.95013 0.91213 0.95775 1.68262 1.18453 1.33782 1.00422 1.19028 0.94824 0.93102 0.92439 1.21747 0.99092 0.93994 1.00149 1.22031 0.98819 0.95774 0.99679 0.94142 0.79753 0.93165 0.91102 0.89307 0.88956 0.74868 0.82027 0.80731 0.80838 0.80048 0.81000 0.81608 0.90329 0.94147 0.94605 0.94155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.28 13.06 21.65 0.28 -60.99 16 2 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 3 Si 0.97 47.43 29.55 68.60 2.03 49.45 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 6 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.24 -13.51 9.93 84.04 0.83 -12.68 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.74 -38.61 5.12 -322.91 -1.65 -40.26 16 10 C 0.17 6.99 2.77 44.99 0.12 7.11 16 11 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 12 C -0.11 -3.66 5.39 30.60 0.16 -3.50 16 13 C -0.10 -2.42 5.39 30.59 0.16 -2.26 16 14 C 0.16 4.37 2.45 44.99 0.11 4.48 16 15 H 0.06 2.02 7.58 -2.39 -0.02 2.00 16 16 N -0.71 -16.37 5.03 -445.79 -2.24 -18.62 16 17 C 0.55 16.39 7.73 86.67 0.67 17.06 16 18 O -0.55 -22.48 14.85 -4.04 -0.06 -22.54 16 19 C -0.15 -3.66 5.91 -19.86 -0.12 -3.77 16 20 C -0.04 -0.55 9.52 22.54 0.21 -0.34 16 21 C -0.13 -0.99 9.93 21.98 0.22 -0.77 16 22 C -0.06 -0.49 9.75 22.37 0.22 -0.27 16 23 C -0.13 -2.12 5.74 -21.29 -0.12 -2.25 16 24 C -0.05 -0.54 9.90 22.52 0.22 -0.32 16 25 C -0.18 -2.23 10.03 22.13 0.22 -2.01 16 26 C 0.12 2.43 11.15 85.02 0.95 3.38 16 27 N -0.50 -15.11 8.44 -187.96 -1.59 -16.70 16 28 C 0.13 3.30 6.61 40.62 0.27 3.57 16 29 C -0.11 -3.53 5.50 30.59 0.17 -3.36 16 30 C -0.12 -4.82 5.50 30.60 0.17 -4.65 16 31 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 32 H 0.37 20.90 7.80 -92.71 -0.72 20.17 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.41 5.90 6.63 -92.70 -0.61 5.29 16 38 H 0.16 1.01 6.37 -2.92 -0.02 0.99 16 39 H 0.18 -0.03 8.06 -2.91 -0.02 -0.05 16 40 H 0.17 0.05 8.06 -2.91 -0.02 0.03 16 41 H 0.18 0.32 8.06 -2.91 -0.02 0.29 16 42 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 43 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 44 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.04 1.73 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -87.26 384.06 1.38 -85.89 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: -0.34 Total: 28.64 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 4.94 Total: -4.88 kcal Atomic # 7 Polarization: -131.37 SS G_CDS: -5.20 Total: -136.57 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.06 Total: -22.54 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.45 kcal Total: -87.26 1.38 -85.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034687024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.172 kcal (2) G-P(sol) polarization free energy of solvation -87.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds