Wall clock time and date at job start Tue Mar 31 2020 22:15:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31617 * 1
3 3 Si 1.86793 * 120.00116 * 2 1
4 4 H 1.48497 * 109.47479 * 240.00235 * 3 2 1
5 5 H 1.48496 * 109.47348 * 0.02562 * 3 2 1
6 6 H 1.48507 * 109.47340 * 120.00067 * 3 2 1
7 7 C 1.38820 * 119.99874 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99716 * 179.97438 * 7 2 1
9 9 N 1.36934 * 119.99777 * 359.97438 * 7 2 1
10 10 C 1.46505 * 119.99441 * 179.97438 * 9 7 2
11 11 H 1.08991 * 109.47266 * 35.00044 * 10 9 7
12 12 C 1.53004 * 109.46836 * 154.99963 * 10 9 7
13 13 C 1.53001 * 109.47109 * 179.97438 * 12 10 9
14 14 C 1.52999 * 109.47030 * 300.00096 * 13 12 10
15 15 H 1.09003 * 109.47593 * 300.00031 * 14 13 12
16 16 N 1.46497 * 109.47039 * 180.02562 * 14 13 12
17 17 C 1.34777 * 120.00158 * 155.00117 * 16 14 13
18 18 O 1.21602 * 120.00330 * 359.97438 * 17 16 14
19 19 C 1.47438 * 119.99863 * 179.97438 * 17 16 14
20 20 C 1.38746 * 120.33377 * 0.02562 * 19 17 16
21 21 C 1.38869 * 120.72465 * 179.97438 * 20 19 17
22 22 C 1.36354 * 121.05802 * 359.97353 * 21 20 19
23 23 C 1.40435 * 120.08434 * 0.05111 * 22 21 20
24 24 C 1.40807 * 121.26319 * 179.97438 * 23 22 21
25 25 C 1.36630 * 118.15323 * 179.97438 * 24 23 22
26 26 C 1.39227 * 119.91215 * 359.97438 * 25 24 23
27 27 N 1.31229 * 121.69611 * 359.71570 * 26 25 24
28 28 C 1.33346 * 121.34867 * 0.57063 * 27 26 25
29 29 C 1.53004 * 109.47253 * 59.99992 * 14 13 12
30 30 C 1.52996 * 109.47135 * 299.99621 * 29 14 13
31 31 H 0.96994 * 119.99779 * 359.97438 * 1 2 3
32 32 H 0.96994 * 120.00781 * 0.02562 * 9 7 2
33 33 H 1.09003 * 109.46789 * 60.00240 * 12 10 9
34 34 H 1.08989 * 109.47144 * 300.00293 * 12 10 9
35 35 H 1.08995 * 109.47310 * 180.02562 * 13 12 10
36 36 H 1.08997 * 109.46886 * 59.99624 * 13 12 10
37 37 H 0.97005 * 119.99961 * 334.99446 * 16 14 13
38 38 H 1.07991 * 119.63493 * 359.96151 * 20 19 17
39 39 H 1.07999 * 119.46847 * 180.02562 * 21 20 19
40 40 H 1.08000 * 119.95290 * 179.97438 * 22 21 20
41 41 H 1.07996 * 120.92255 * 359.95283 * 24 23 22
42 42 H 1.08004 * 120.04265 * 180.02562 * 25 24 23
43 43 H 1.08001 * 119.15373 * 179.97438 * 26 25 24
44 44 H 1.08998 * 109.46821 * 60.00031 * 29 14 13
45 45 H 1.08999 * 109.47067 * 180.02562 * 29 14 13
46 46 H 1.09003 * 109.47499 * 300.00392 * 30 29 14
47 47 H 1.08995 * 109.47336 * 179.97438 * 30 29 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.1039 1.6964 -1.2125
5 1 1.2853 2.7464 0.0006
6 1 3.1040 1.6963 1.2125
7 6 2.0102 -1.2022 -0.0005
8 1 3.0903 -1.2022 -0.0010
9 7 1.3255 -2.3881 -0.0005
10 6 2.0581 -3.6568 -0.0017
11 1 2.9692 -3.5508 0.5871
12 6 1.1813 -4.7524 0.6082
13 6 1.9461 -6.0776 0.6064
14 6 2.3083 -6.4555 -0.8312
15 1 1.3970 -6.5612 -1.4198
16 7 3.0400 -7.7246 -0.8329
17 6 3.0298 -8.5070 -1.9304
18 8 2.4128 -8.1596 -2.9190
19 6 3.7667 -9.7840 -1.9322
20 6 4.4725 -10.1873 -0.8079
21 6 5.1690 -11.3887 -0.8005
22 6 5.1782 -12.2032 -1.8941
23 6 4.4774 -11.8330 -3.0534
24 6 4.4705 -12.6548 -4.1968
25 6 3.7673 -12.2330 -5.2896
26 6 3.0837 -11.0208 -5.2499
27 7 3.0883 -10.2614 -4.1796
28 6 3.7596 -10.6130 -3.0824
29 6 3.1851 -5.3599 -1.4411
30 6 2.4203 -4.0347 -1.4394
31 1 -0.4849 0.8400 0.0004
32 1 0.3556 -2.3881 -0.0005
33 1 0.2702 -4.8584 0.0193
34 1 0.9229 -4.4830 1.6321
35 1 1.3214 -6.8582 1.0405
36 1 2.8574 -5.9719 1.1949
37 1 3.5320 -8.0019 -0.0442
38 1 4.4806 -9.5599 0.0711
39 1 5.7113 -11.6830 0.0858
40 1 5.7262 -13.1335 -1.8690
41 1 5.0066 -13.5922 -4.2097
42 1 3.7410 -12.8396 -6.1829
43 1 2.5320 -10.6990 -6.1208
44 1 4.0964 -5.2542 -0.8525
45 1 3.4428 -5.6289 -2.4654
46 1 1.5089 -4.1404 -2.0279
47 1 3.0450 -3.2541 -1.8734
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001034687024.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:15:50
Heat of formation + Delta-G solvation = 2.282574 kcal
Electronic energy + Delta-G solvation = -28229.216591 eV
Core-core repulsion = 24375.547799 eV
Total energy + Delta-G solvation = -3853.668792 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.97732 -40.74773 -39.18288 -37.88898 -36.34293 -34.70216 -34.34269 -32.57336
-31.70255 -31.48000 -31.10207 -28.81803 -25.89273 -25.39999 -24.42643 -24.24883
-23.59812 -22.32871 -21.42756 -20.84140 -19.27199 -19.13149 -18.69231 -17.86960
-17.11228 -17.02462 -16.73897 -16.16111 -15.82954 -15.66454 -15.40130 -15.23038
-15.12095 -15.03884 -14.86798 -14.51531 -14.13154 -13.95763 -13.85706 -13.44917
-13.15114 -13.09992 -13.02882 -12.80510 -12.70992 -12.42625 -12.33177 -12.26006
-12.17436 -12.04718 -11.65850 -11.48880 -11.45551 -11.20464 -11.03569 -10.82961
-10.12032 -10.02202 -9.79225 -9.26325 -8.99535 -7.92916 -5.21224 -0.81746
-0.15498 0.77113 1.46109 1.49629 1.55459 1.80565 2.11716 2.25909
2.56930 3.17986 3.35515 3.39355 3.55111 3.74876 3.78190 3.82392
3.88815 3.90828 3.99041 4.05735 4.20543 4.29341 4.36402 4.39781
4.43992 4.48554 4.55612 4.58939 4.64696 4.71722 4.85775 4.93277
4.98497 5.00882 5.09896 5.11756 5.14817 5.22507 5.24602 5.27181
5.38370 5.47983 5.53539 5.55081 5.59042 5.63249 5.85585 6.29547
6.62644 7.08401 7.34754 7.35720 8.12465 8.35190 9.30626
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.024486 B = 0.002016 C = 0.001948
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1143.257295 B =13887.377490 C =14370.299463
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.971 5.971
2 C -0.081 4.081
3 Si 0.972 3.028
4 H -0.281 1.281
5 H -0.296 1.296
6 H -0.275 1.275
7 C -0.237 4.237
8 H 0.075 0.925
9 N -0.739 5.739
10 C 0.173 3.827
11 H 0.051 0.949
12 C -0.113 4.113
13 C -0.104 4.104
14 C 0.156 3.844
15 H 0.058 0.942
16 N -0.709 5.709
17 C 0.546 3.454
18 O -0.553 6.553
19 C -0.154 4.154
20 C -0.043 4.043
21 C -0.130 4.130
22 C -0.057 4.057
23 C -0.131 4.131
24 C -0.050 4.050
25 C -0.178 4.178
26 C 0.115 3.885
27 N -0.501 5.501
28 C 0.129 3.871
29 C -0.110 4.110
30 C -0.122 4.122
31 H 0.250 0.750
32 H 0.371 0.629
33 H 0.050 0.950
34 H 0.070 0.930
35 H 0.088 0.912
36 H 0.092 0.908
37 H 0.413 0.587
38 H 0.162 0.838
39 H 0.175 0.825
40 H 0.174 0.826
41 H 0.182 0.818
42 H 0.173 0.827
43 H 0.167 0.833
44 H 0.078 0.922
45 H 0.040 0.960
46 H 0.035 0.965
47 H 0.040 0.960
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.660 -35.078 -1.419 38.044
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.622 5.622
2 C -0.273 4.273
3 Si 0.801 3.199
4 H -0.208 1.208
5 H -0.223 1.223
6 H -0.200 1.200
7 C -0.369 4.369
8 H 0.093 0.907
9 N -0.378 5.378
10 C 0.065 3.935
11 H 0.069 0.931
12 C -0.152 4.152
13 C -0.142 4.142
14 C 0.051 3.949
15 H 0.076 0.924
16 N -0.363 5.363
17 C 0.334 3.666
18 O -0.431 6.431
19 C -0.157 4.157
20 C -0.063 4.063
21 C -0.147 4.147
22 C -0.075 4.075
23 C -0.134 4.134
24 C -0.076 4.076
25 C -0.197 4.197
26 C -0.056 4.056
27 N -0.209 5.209
28 C 0.006 3.994
29 C -0.150 4.150
30 C -0.163 4.163
31 H 0.059 0.941
32 H 0.202 0.798
33 H 0.068 0.932
34 H 0.089 0.911
35 H 0.107 0.893
36 H 0.110 0.890
37 H 0.251 0.749
38 H 0.180 0.820
39 H 0.193 0.807
40 H 0.192 0.808
41 H 0.200 0.800
42 H 0.190 0.810
43 H 0.184 0.816
44 H 0.097 0.903
45 H 0.059 0.941
46 H 0.054 0.946
47 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges 13.908 -33.856 -1.991 36.655
hybrid contribution 0.023 0.875 -0.388 0.957
sum 13.931 -32.981 -2.378 35.881
Atomic orbital electron populations
1.69818 1.06609 1.25987 1.59827 1.25581 0.96408 1.01135 1.04131
0.85223 0.77181 0.79282 0.78169 1.20768 1.22280 1.20046 1.19598
0.91390 0.85305 1.40586 0.90680 1.42674 1.05440 1.01149 1.88573
1.20486 0.94649 0.85033 0.93301 0.93108 1.21640 0.98303 0.94148
1.01105 1.21648 1.01883 0.96597 0.94054 1.20804 0.94178 0.82068
0.97861 0.92376 1.45833 1.53401 1.20761 1.16281 1.18471 0.80790
0.84299 0.83037 1.90833 1.43897 1.73953 1.34403 1.19947 1.04471
0.95655 0.95673 1.21867 0.91584 0.96873 0.95979 1.21321 0.99584
0.93313 1.00504 1.21694 0.94891 1.00500 0.90463 1.19198 1.00811
0.95307 0.98045 1.21994 0.95599 0.99429 0.90575 1.22278 0.98519
0.97486 1.01431 1.23590 0.95013 0.91213 0.95775 1.68262 1.18453
1.33782 1.00422 1.19028 0.94824 0.93102 0.92439 1.21747 0.99092
0.93994 1.00149 1.22031 0.98819 0.95774 0.99679 0.94142 0.79753
0.93165 0.91102 0.89307 0.88956 0.74868 0.82027 0.80731 0.80838
0.80048 0.81000 0.81608 0.90329 0.94147 0.94605 0.94155
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -61.28 13.06 21.65 0.28 -60.99 16
2 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16
3 Si 0.97 47.43 29.55 68.60 2.03 49.45 16
4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16
5 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16
6 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16
7 C -0.24 -13.51 9.93 84.04 0.83 -12.68 16
8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16
9 N -0.74 -38.61 5.12 -322.91 -1.65 -40.26 16
10 C 0.17 6.99 2.77 44.99 0.12 7.11 16
11 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16
12 C -0.11 -3.66 5.39 30.60 0.16 -3.50 16
13 C -0.10 -2.42 5.39 30.59 0.16 -2.26 16
14 C 0.16 4.37 2.45 44.99 0.11 4.48 16
15 H 0.06 2.02 7.58 -2.39 -0.02 2.00 16
16 N -0.71 -16.37 5.03 -445.79 -2.24 -18.62 16
17 C 0.55 16.39 7.73 86.67 0.67 17.06 16
18 O -0.55 -22.48 14.85 -4.04 -0.06 -22.54 16
19 C -0.15 -3.66 5.91 -19.86 -0.12 -3.77 16
20 C -0.04 -0.55 9.52 22.54 0.21 -0.34 16
21 C -0.13 -0.99 9.93 21.98 0.22 -0.77 16
22 C -0.06 -0.49 9.75 22.37 0.22 -0.27 16
23 C -0.13 -2.12 5.74 -21.29 -0.12 -2.25 16
24 C -0.05 -0.54 9.90 22.52 0.22 -0.32 16
25 C -0.18 -2.23 10.03 22.13 0.22 -2.01 16
26 C 0.12 2.43 11.15 85.02 0.95 3.38 16
27 N -0.50 -15.11 8.44 -187.96 -1.59 -16.70 16
28 C 0.13 3.30 6.61 40.62 0.27 3.57 16
29 C -0.11 -3.53 5.50 30.59 0.17 -3.36 16
30 C -0.12 -4.82 5.50 30.60 0.17 -4.65 16
31 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16
32 H 0.37 20.90 7.80 -92.71 -0.72 20.17 16
33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16
34 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16
35 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16
36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16
37 H 0.41 5.90 6.63 -92.70 -0.61 5.29 16
38 H 0.16 1.01 6.37 -2.92 -0.02 0.99 16
39 H 0.18 -0.03 8.06 -2.91 -0.02 -0.05 16
40 H 0.17 0.05 8.06 -2.91 -0.02 0.03 16
41 H 0.18 0.32 8.06 -2.91 -0.02 0.29 16
42 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16
43 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16
44 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16
45 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16
46 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16
47 H 0.04 1.73 8.14 -2.39 -0.02 1.72 16
Total: -1.00 -87.26 384.06 1.38 -85.89
By element:
Atomic # 1 Polarization: 28.98 SS G_CDS: -0.34 Total: 28.64 kcal
Atomic # 6 Polarization: -9.82 SS G_CDS: 4.94 Total: -4.88 kcal
Atomic # 7 Polarization: -131.37 SS G_CDS: -5.20 Total: -136.57 kcal
Atomic # 8 Polarization: -22.48 SS G_CDS: -0.06 Total: -22.54 kcal
Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.45 kcal
Total: -87.26 1.38 -85.89 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001034687024.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.172 kcal
(2) G-P(sol) polarization free energy of solvation -87.265 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.907 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.889 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.283 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds