Wall clock time and date at job start Tue Mar 31 2020 22:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 119.99866 * 2 1 4 4 H 1.48501 * 109.47233 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47160 * 299.99776 * 3 2 1 6 6 H 1.48497 * 109.47356 * 59.99730 * 3 2 1 7 7 C 1.38815 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99805 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99704 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99462 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.47068 * 34.99487 * 10 9 7 12 12 C 1.52999 * 109.46691 * 155.00068 * 10 9 7 13 13 C 1.53006 * 109.46626 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47127 * 299.99539 * 13 12 10 15 15 H 1.08996 * 109.46952 * 300.00302 * 14 13 12 16 16 N 1.46496 * 109.46953 * 179.97438 * 14 13 12 17 17 C 1.34781 * 119.99775 * 154.99854 * 16 14 13 18 18 O 1.21559 * 120.00087 * 0.02562 * 17 16 14 19 19 C 1.47766 * 119.99902 * 179.97438 * 17 16 14 20 20 C 1.40632 * 119.80408 * 359.73438 * 19 17 16 21 21 C 1.35706 * 120.91752 * 179.68259 * 20 19 17 22 22 C 1.40762 * 120.11066 * 0.60783 * 21 20 19 23 23 N 1.33653 * 120.82373 * 179.64906 * 22 21 20 24 24 C 1.31118 * 121.38838 * 180.02562 * 23 22 21 25 25 C 1.39314 * 121.77257 * 359.97438 * 24 23 22 26 26 C 1.36582 * 119.90608 * 0.02562 * 25 24 23 27 27 C 1.40897 * 118.15580 * 0.02562 * 26 25 24 28 28 C 1.38551 * 119.80238 * 179.97438 * 19 17 16 29 29 C 1.53002 * 109.46817 * 60.00361 * 14 13 12 30 30 C 1.52996 * 109.46972 * 299.99733 * 29 14 13 31 31 H 0.97000 * 119.99861 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00259 * 359.97438 * 9 7 2 33 33 H 1.08993 * 109.47839 * 59.99891 * 12 10 9 34 34 H 1.09000 * 109.47160 * 299.99453 * 12 10 9 35 35 H 1.09001 * 109.46801 * 59.99811 * 13 12 10 36 36 H 1.09001 * 109.46998 * 179.97438 * 13 12 10 37 37 H 0.97001 * 120.00575 * 335.00735 * 16 14 13 38 38 H 1.07991 * 119.53805 * 359.97438 * 20 19 17 39 39 H 1.07994 * 119.94006 * 180.28089 * 21 20 19 40 40 H 1.07997 * 119.11512 * 180.02562 * 24 23 22 41 41 H 1.08005 * 120.04948 * 180.02562 * 25 24 23 42 42 H 1.07995 * 120.92409 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.29809 * 0.03209 * 28 19 17 44 44 H 1.08996 * 109.47407 * 60.00219 * 29 14 13 45 45 H 1.09000 * 109.46986 * 179.97438 * 29 14 13 46 46 H 1.09001 * 109.46993 * 180.02562 * 30 29 14 47 47 H 1.09000 * 109.47380 * 299.99696 * 30 29 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0904 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9689 -3.5505 0.5899 12 6 1.1810 -4.7521 0.6102 13 6 1.9458 -6.0773 0.6096 14 6 2.3091 -6.4558 -0.8276 15 1 1.3982 -6.5618 -1.4167 16 7 3.0420 -7.7243 -0.8281 17 6 3.0328 -8.5074 -1.9250 18 8 2.4169 -8.1609 -2.9141 19 6 3.7725 -9.7866 -1.9257 20 6 4.4892 -10.1803 -0.7816 21 6 5.1710 -11.3533 -0.7552 22 6 5.1795 -12.1907 -1.8866 23 7 5.8520 -13.3457 -1.8787 24 6 5.8677 -14.1339 -2.9264 25 6 5.1868 -13.8106 -4.0980 26 6 4.4791 -12.6449 -4.1747 27 6 4.4654 -11.8000 -3.0472 28 6 3.7599 -10.5887 -3.0554 29 6 3.1863 -5.3604 -1.4373 30 6 2.4215 -4.0353 -1.4367 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 0.2703 -4.8584 0.0208 34 1 0.9218 -4.4823 1.6339 35 1 2.8567 -5.9712 1.1987 36 1 1.3211 -6.8576 1.0443 37 1 3.5337 -8.0007 -0.0390 38 1 4.4931 -9.5424 0.0898 39 1 5.7124 -11.6422 0.1334 40 1 6.4229 -15.0591 -2.8796 41 1 5.2183 -14.4807 -4.9444 42 1 3.9456 -12.3778 -5.0748 43 1 3.2126 -10.2828 -3.9347 44 1 4.0972 -5.2545 -0.8482 45 1 3.4455 -5.6303 -2.4610 46 1 3.0462 -3.2551 -1.8714 47 1 1.5106 -4.1413 -2.0259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034724621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:47 Heat of formation + Delta-G solvation = 16.790704 kcal Electronic energy + Delta-G solvation = -27747.607487 eV Core-core repulsion = 23894.567815 eV Total energy + Delta-G solvation = -3853.039672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.34337 -40.06804 -38.16227 -36.98515 -34.95828 -33.97421 -33.12345 -31.38125 -30.54609 -30.43057 -30.31550 -27.47163 -25.19041 -24.30991 -23.55828 -22.58361 -22.36647 -21.45329 -20.75045 -19.62940 -18.61745 -18.17741 -17.37738 -17.01149 -16.29454 -16.09047 -15.26909 -15.11799 -14.94035 -14.65259 -14.52485 -14.33856 -13.94689 -13.88274 -13.74597 -13.55481 -13.53194 -13.05469 -12.61487 -12.47242 -12.12662 -12.01299 -11.89546 -11.80666 -11.44141 -11.07806 -11.04803 -10.82880 -10.76803 -10.67749 -10.17265 -10.11395 -10.04984 -9.98425 -9.75912 -9.58792 -9.31413 -9.02729 -8.84914 -8.72196 -6.92834 -5.74657 -3.03019 -0.21708 0.20473 1.46116 2.04640 2.96250 3.05375 3.44224 3.49894 3.52064 3.67930 3.76746 4.10629 4.20404 4.33264 4.42566 4.54617 4.60447 4.63786 4.71166 4.90520 4.98968 5.03568 5.26093 5.28467 5.42666 5.46486 5.52579 5.54497 5.60519 5.67554 5.72077 5.77220 5.81424 5.85784 5.88021 6.00809 6.03214 6.22863 6.24396 6.27977 6.30036 6.47854 6.56574 6.64286 6.73061 6.99622 7.15951 7.36781 7.40142 7.72576 8.05851 8.44251 9.55275 10.13999 10.48450 11.48159 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033227 B = 0.001753 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.489146 B =15964.550654 C =16092.539880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.120 4.120 13 C -0.119 4.119 14 C 0.145 3.855 15 H 0.089 0.911 16 N -0.718 5.718 17 C 0.556 3.444 18 O -0.533 6.533 19 C -0.131 4.131 20 C -0.075 4.075 21 C -0.097 4.097 22 C 0.142 3.858 23 N -0.479 5.479 24 C 0.140 3.860 25 C -0.181 4.181 26 C -0.045 4.045 27 C -0.114 4.114 28 C -0.025 4.025 29 C -0.124 4.124 30 C -0.132 4.132 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.397 0.603 38 H 0.135 0.865 39 H 0.142 0.858 40 H 0.161 0.839 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.661 -30.685 -4.037 32.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.159 4.159 13 C -0.158 4.158 14 C 0.042 3.958 15 H 0.108 0.892 16 N -0.369 5.369 17 C 0.343 3.657 18 O -0.411 6.411 19 C -0.134 4.134 20 C -0.095 4.095 21 C -0.116 4.116 22 C 0.020 3.980 23 N -0.187 5.187 24 C -0.033 4.033 25 C -0.201 4.201 26 C -0.071 4.071 27 C -0.116 4.116 28 C -0.045 4.045 29 C -0.163 4.163 30 C -0.173 4.173 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.232 0.768 38 H 0.152 0.848 39 H 0.160 0.840 40 H 0.178 0.822 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.164 0.836 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.756 -30.391 -3.885 32.471 hybrid contribution -0.002 1.003 -0.500 1.121 sum 10.754 -29.387 -4.385 31.599 Atomic orbital electron populations 1.69675 1.05083 1.25459 1.57951 1.24742 0.95507 0.97657 1.03195 0.86141 0.78779 0.84278 0.77153 1.20598 1.21927 1.21931 1.19294 0.91005 0.84160 1.42281 0.91168 1.42438 1.05793 0.99799 1.88546 1.20242 0.94296 0.85983 0.92781 0.93586 1.21752 0.98947 0.93398 1.01824 1.21758 1.00898 0.98367 0.94751 1.21164 0.95490 0.81508 0.97679 0.89250 1.46094 1.53019 1.21895 1.15887 1.18157 0.80694 0.83477 0.83399 1.90802 1.43517 1.73667 1.33092 1.20026 1.01600 0.96320 0.95504 1.20970 0.95060 0.96202 0.97259 1.20689 0.99975 0.93345 0.97577 1.19022 0.93694 0.92129 0.93111 1.68089 1.17995 1.03671 1.28908 1.23065 0.94245 0.97844 0.88098 1.21931 0.99637 0.98383 1.00137 1.21606 0.95407 0.92834 0.97248 1.18822 1.00708 0.96550 0.95522 1.21479 0.94239 0.90921 0.97885 1.21901 0.98578 0.95353 1.00473 1.22225 0.99783 0.94460 1.00833 0.93618 0.78307 0.91934 0.91307 0.91520 0.91810 0.76780 0.84762 0.84050 0.82157 0.84179 0.83902 0.83583 0.92263 0.92334 0.91776 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.05 5.12 -53.42 -0.27 -18.33 16 10 C 0.18 3.42 2.77 -67.93 -0.19 3.23 16 11 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 12 C -0.12 -1.89 5.39 -26.73 -0.14 -2.03 16 13 C -0.12 -1.43 5.39 -26.73 -0.14 -1.57 16 14 C 0.14 1.88 2.45 -67.93 -0.17 1.71 16 15 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 16 N -0.72 -7.65 5.03 -54.78 -0.28 -7.92 16 17 C 0.56 6.87 7.73 -12.36 -0.10 6.78 16 18 O -0.53 -8.60 15.97 5.31 0.08 -8.52 16 19 C -0.13 -1.31 5.87 -104.98 -0.62 -1.93 16 20 C -0.07 -0.58 9.44 -39.58 -0.37 -0.95 16 21 C -0.10 -0.80 9.95 -39.53 -0.39 -1.19 16 22 C 0.14 1.36 6.61 -84.78 -0.56 0.80 16 23 N -0.48 -4.44 10.33 -10.92 -0.11 -4.55 16 24 C 0.14 0.90 11.15 -17.46 -0.19 0.70 16 25 C -0.18 -0.96 10.03 -39.78 -0.40 -1.36 16 26 C -0.04 -0.30 9.89 -39.17 -0.39 -0.68 16 27 C -0.11 -1.02 5.74 -106.82 -0.61 -1.63 16 28 C -0.03 -0.25 9.35 -38.74 -0.36 -0.61 16 29 C -0.12 -1.82 5.49 -26.73 -0.15 -1.96 16 30 C -0.13 -2.39 5.50 -26.73 -0.15 -2.53 16 31 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.38 10.17 7.80 -40.82 -0.32 9.85 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.40 3.00 6.59 -40.82 -0.27 2.74 16 38 H 0.13 0.68 6.35 -52.49 -0.33 0.35 16 39 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.16 0.52 8.06 -52.49 -0.42 0.09 16 41 H 0.14 0.32 8.06 -52.48 -0.42 -0.10 16 42 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 43 H 0.15 1.35 7.62 -52.49 -0.40 0.95 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 386.06 15.07 5.82 5.82 Total: -1.00 -34.42 386.06 -10.99 -45.41 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -6.75 Total: 8.66 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -5.18 Total: -10.47 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.06 Total: -58.38 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.08 Total: -8.52 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.42 -10.99 -45.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034724621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.204 kcal (2) G-P(sol) polarization free energy of solvation -34.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds