Wall clock time and date at job start Tue Mar 31 2020 22:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86799 * 119.99866 * 2 1 4 4 H 1.48501 * 109.47233 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47160 * 299.99776 * 3 2 1 6 6 H 1.48497 * 109.47356 * 59.99730 * 3 2 1 7 7 C 1.38815 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99805 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99704 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99462 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.47068 * 34.99487 * 10 9 7 12 12 C 1.52999 * 109.46691 * 155.00068 * 10 9 7 13 13 C 1.53006 * 109.46626 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47127 * 299.99539 * 13 12 10 15 15 H 1.08996 * 109.46952 * 300.00302 * 14 13 12 16 16 N 1.46496 * 109.46953 * 179.97438 * 14 13 12 17 17 C 1.34781 * 119.99775 * 154.99854 * 16 14 13 18 18 O 1.21559 * 120.00087 * 0.02562 * 17 16 14 19 19 C 1.47766 * 119.99902 * 179.97438 * 17 16 14 20 20 C 1.40632 * 119.80408 * 359.73438 * 19 17 16 21 21 C 1.35706 * 120.91752 * 179.68259 * 20 19 17 22 22 C 1.40762 * 120.11066 * 0.60783 * 21 20 19 23 23 N 1.33653 * 120.82373 * 179.64906 * 22 21 20 24 24 C 1.31118 * 121.38838 * 180.02562 * 23 22 21 25 25 C 1.39314 * 121.77257 * 359.97438 * 24 23 22 26 26 C 1.36582 * 119.90608 * 0.02562 * 25 24 23 27 27 C 1.40897 * 118.15580 * 0.02562 * 26 25 24 28 28 C 1.38551 * 119.80238 * 179.97438 * 19 17 16 29 29 C 1.53002 * 109.46817 * 60.00361 * 14 13 12 30 30 C 1.52996 * 109.46972 * 299.99733 * 29 14 13 31 31 H 0.97000 * 119.99861 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00259 * 359.97438 * 9 7 2 33 33 H 1.08993 * 109.47839 * 59.99891 * 12 10 9 34 34 H 1.09000 * 109.47160 * 299.99453 * 12 10 9 35 35 H 1.09001 * 109.46801 * 59.99811 * 13 12 10 36 36 H 1.09001 * 109.46998 * 179.97438 * 13 12 10 37 37 H 0.97001 * 120.00575 * 335.00735 * 16 14 13 38 38 H 1.07991 * 119.53805 * 359.97438 * 20 19 17 39 39 H 1.07994 * 119.94006 * 180.28089 * 21 20 19 40 40 H 1.07997 * 119.11512 * 180.02562 * 24 23 22 41 41 H 1.08005 * 120.04948 * 180.02562 * 25 24 23 42 42 H 1.07995 * 120.92409 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.29809 * 0.03209 * 28 19 17 44 44 H 1.08996 * 109.47407 * 60.00219 * 29 14 13 45 45 H 1.09000 * 109.46986 * 179.97438 * 29 14 13 46 46 H 1.09001 * 109.46993 * 180.02562 * 30 29 14 47 47 H 1.09000 * 109.47380 * 299.99696 * 30 29 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0904 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9689 -3.5505 0.5899 12 6 1.1810 -4.7521 0.6102 13 6 1.9458 -6.0773 0.6096 14 6 2.3091 -6.4558 -0.8276 15 1 1.3982 -6.5618 -1.4167 16 7 3.0420 -7.7243 -0.8281 17 6 3.0328 -8.5074 -1.9250 18 8 2.4169 -8.1609 -2.9141 19 6 3.7725 -9.7866 -1.9257 20 6 4.4892 -10.1803 -0.7816 21 6 5.1710 -11.3533 -0.7552 22 6 5.1795 -12.1907 -1.8866 23 7 5.8520 -13.3457 -1.8787 24 6 5.8677 -14.1339 -2.9264 25 6 5.1868 -13.8106 -4.0980 26 6 4.4791 -12.6449 -4.1747 27 6 4.4654 -11.8000 -3.0472 28 6 3.7599 -10.5887 -3.0554 29 6 3.1863 -5.3604 -1.4373 30 6 2.4215 -4.0353 -1.4367 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 0.2703 -4.8584 0.0208 34 1 0.9218 -4.4823 1.6339 35 1 2.8567 -5.9712 1.1987 36 1 1.3211 -6.8576 1.0443 37 1 3.5337 -8.0007 -0.0390 38 1 4.4931 -9.5424 0.0898 39 1 5.7124 -11.6422 0.1334 40 1 6.4229 -15.0591 -2.8796 41 1 5.2183 -14.4807 -4.9444 42 1 3.9456 -12.3778 -5.0748 43 1 3.2126 -10.2828 -3.9347 44 1 4.0972 -5.2545 -0.8482 45 1 3.4455 -5.6303 -2.4610 46 1 3.0462 -3.2551 -1.8714 47 1 1.5106 -4.1413 -2.0259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034724621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:46 Heat of formation + Delta-G solvation = -5.278167 kcal Electronic energy + Delta-G solvation = -27748.564465 eV Core-core repulsion = 23894.567815 eV Total energy + Delta-G solvation = -3853.996650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.96895 -41.00606 -39.37980 -37.70655 -36.41777 -34.76911 -34.46083 -32.67989 -31.69350 -31.55306 -31.09905 -28.94382 -26.15138 -25.24175 -24.86483 -23.66073 -23.22990 -22.56178 -21.80831 -20.98857 -19.50489 -19.02386 -18.76193 -17.99595 -17.17341 -16.89757 -16.78545 -16.19481 -15.85259 -15.53740 -15.39612 -15.31743 -15.21476 -15.00403 -14.96990 -14.62623 -14.43044 -14.04522 -13.96515 -13.47194 -13.17838 -13.09352 -13.08508 -12.87274 -12.71031 -12.48029 -12.42869 -12.28655 -12.10015 -12.02283 -11.66243 -11.61474 -11.47270 -11.20928 -11.06225 -10.83650 -10.53229 -10.14420 -9.82395 -9.34763 -8.98542 -7.93150 -5.21020 -0.82552 -0.35189 0.85563 1.39273 1.46930 1.47642 1.57442 2.04129 2.27855 2.56881 3.07194 3.26715 3.39920 3.54323 3.57919 3.71096 3.77476 3.85595 3.90526 3.95615 4.00048 4.04503 4.27007 4.31362 4.38070 4.40812 4.50809 4.52742 4.60380 4.65770 4.76174 4.85369 4.88238 4.94838 5.00441 5.02336 5.11649 5.14128 5.17754 5.26008 5.26143 5.29044 5.43778 5.49370 5.53509 5.56145 5.64842 5.74382 6.29909 6.50746 6.86846 7.16480 7.35291 8.13307 8.35372 9.30732 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033227 B = 0.001753 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.489146 B =15964.550654 C =16092.539880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.297 1.297 6 H -0.293 1.293 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.739 5.739 10 C 0.172 3.828 11 H 0.049 0.951 12 C -0.113 4.113 13 C -0.106 4.106 14 C 0.152 3.848 15 H 0.066 0.934 16 N -0.702 5.702 17 C 0.556 3.444 18 O -0.579 6.579 19 C -0.146 4.146 20 C -0.069 4.069 21 C -0.103 4.103 22 C 0.123 3.877 23 N -0.508 5.508 24 C 0.139 3.861 25 C -0.172 4.172 26 C -0.055 4.055 27 C -0.131 4.131 28 C -0.031 4.031 29 C -0.112 4.112 30 C -0.123 4.123 31 H 0.249 0.751 32 H 0.371 0.629 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.416 0.584 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.192 0.808 41 H 0.175 0.825 42 H 0.162 0.838 43 H 0.141 0.859 44 H 0.077 0.923 45 H 0.047 0.953 46 H 0.040 0.960 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.774 -33.208 -3.308 35.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.224 1.224 6 H -0.220 1.220 7 C -0.367 4.367 8 H 0.094 0.906 9 N -0.378 5.378 10 C 0.064 3.936 11 H 0.067 0.933 12 C -0.152 4.152 13 C -0.144 4.144 14 C 0.048 3.952 15 H 0.085 0.915 16 N -0.354 5.354 17 C 0.345 3.655 18 O -0.460 6.460 19 C -0.149 4.149 20 C -0.089 4.089 21 C -0.122 4.122 22 C 0.002 3.998 23 N -0.217 5.217 24 C -0.033 4.033 25 C -0.192 4.192 26 C -0.081 4.081 27 C -0.133 4.133 28 C -0.051 4.051 29 C -0.152 4.152 30 C -0.164 4.164 31 H 0.058 0.942 32 H 0.203 0.797 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.255 0.745 38 H 0.180 0.820 39 H 0.174 0.826 40 H 0.209 0.791 41 H 0.193 0.807 42 H 0.180 0.820 43 H 0.158 0.842 44 H 0.096 0.904 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.930 -32.966 -3.125 35.549 hybrid contribution -0.597 1.604 -0.821 1.899 sum 12.332 -31.362 -3.947 33.930 Atomic orbital electron populations 1.69830 1.06587 1.25796 1.60015 1.25543 0.96362 1.01022 1.04199 0.85113 0.78300 0.80088 0.76541 1.18999 1.22430 1.22008 1.19674 0.91417 0.85317 1.40245 0.90644 1.42684 1.05451 1.01150 1.88547 1.20503 0.94594 0.85019 0.93516 0.93305 1.21639 0.98374 0.94125 1.01079 1.21664 1.01884 0.96656 0.94211 1.20892 0.94420 0.81926 0.97967 0.91546 1.45839 1.52566 1.20660 1.16322 1.18526 0.80035 0.84089 0.82880 1.90780 1.45595 1.74821 1.34822 1.19912 1.02743 0.95482 0.96789 1.21147 0.94098 0.96416 0.97227 1.20924 1.00076 0.93292 0.97876 1.19339 0.94035 0.92724 0.93733 1.68138 1.19027 1.04132 1.30398 1.23727 0.93583 0.98250 0.87722 1.22322 0.97979 0.98106 1.00757 1.21948 0.95816 0.93056 0.97295 1.18979 1.01051 0.96718 0.96513 1.21546 0.94361 0.91438 0.97789 1.21766 0.99021 0.93876 1.00501 1.22026 0.98983 0.95859 0.99494 0.94181 0.79734 0.92905 0.91330 0.89154 0.89195 0.74533 0.81952 0.82568 0.79089 0.80713 0.82023 0.84171 0.90427 0.93435 0.94096 0.94283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.30 13.06 21.65 0.28 -60.02 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 3 Si 0.97 46.74 29.55 68.60 2.03 48.77 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 6 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 7 C -0.23 -13.10 9.93 84.03 0.83 -12.27 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -37.46 5.12 -322.94 -1.65 -39.12 16 10 C 0.17 6.60 2.77 44.99 0.12 6.73 16 11 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 12 C -0.11 -3.45 5.39 30.60 0.16 -3.28 16 13 C -0.11 -2.24 5.39 30.60 0.16 -2.08 16 14 C 0.15 3.74 2.45 44.99 0.11 3.85 16 15 H 0.07 1.99 7.58 -2.39 -0.02 1.98 16 16 N -0.70 -13.58 5.03 -445.49 -2.24 -15.82 16 17 C 0.56 13.46 7.73 86.76 0.67 14.13 16 18 O -0.58 -19.16 15.97 -3.90 -0.06 -19.22 16 19 C -0.15 -2.83 5.87 -20.10 -0.12 -2.94 16 20 C -0.07 -0.95 9.44 22.27 0.21 -0.74 16 21 C -0.10 -1.54 9.95 22.30 0.22 -1.32 16 22 C 0.12 2.22 6.61 40.35 0.27 2.49 16 23 N -0.51 -8.65 10.33 -188.45 -1.95 -10.60 16 24 C 0.14 1.44 11.15 85.06 0.95 2.39 16 25 C -0.17 -1.35 10.03 22.14 0.22 -1.13 16 26 C -0.06 -0.64 9.89 22.53 0.22 -0.42 16 27 C -0.13 -2.25 5.74 -21.29 -0.12 -2.37 16 28 C -0.03 -0.61 9.35 22.82 0.21 -0.39 16 29 C -0.11 -3.22 5.49 30.59 0.17 -3.05 16 30 C -0.12 -4.51 5.50 30.59 0.17 -4.35 16 31 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.37 20.33 7.80 -92.71 -0.72 19.61 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 37 H 0.42 4.88 6.59 -92.71 -0.61 4.27 16 38 H 0.16 1.12 6.35 -2.92 -0.02 1.10 16 39 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.19 0.59 8.06 -2.91 -0.02 0.57 16 41 H 0.18 0.10 8.06 -2.91 -0.02 0.08 16 42 H 0.16 1.12 8.06 -2.91 -0.02 1.09 16 43 H 0.14 2.74 7.62 -2.91 -0.02 2.72 16 44 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -77.56 386.06 1.01 -76.55 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: -0.33 Total: 28.35 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 4.94 Total: -8.90 kcal Atomic # 7 Polarization: -120.00 SS G_CDS: -5.56 Total: -125.55 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.06 Total: -19.22 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -77.56 1.01 -76.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034724621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.268 kcal (2) G-P(sol) polarization free energy of solvation -77.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds