Wall clock time and date at job start Tue Mar 31 2020 22:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99497 * 2 1 4 4 H 1.48494 * 109.46830 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47048 * 300.00105 * 3 2 1 6 6 H 1.48494 * 109.47216 * 60.00540 * 3 2 1 7 7 C 1.38806 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99909 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99779 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.46991 * 324.99986 * 10 9 7 12 12 C 1.52997 * 109.46876 * 84.99839 * 10 9 7 13 13 C 1.53002 * 109.46791 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47705 * 300.00331 * 13 12 10 15 15 H 1.09003 * 109.46716 * 300.00117 * 14 13 12 16 16 N 1.46492 * 109.47409 * 179.97438 * 14 13 12 17 17 C 1.34777 * 119.99959 * 85.00078 * 16 14 13 18 18 O 1.21551 * 119.99831 * 0.02562 * 17 16 14 19 19 C 1.47879 * 120.00263 * 179.97438 * 17 16 14 20 20 C 1.40575 * 119.70858 * 359.97438 * 19 17 16 21 21 C 1.35813 * 120.74099 * 179.97438 * 20 19 17 22 22 C 1.40545 * 119.98144 * 0.08736 * 21 20 19 23 23 C 1.40823 * 121.13955 * 179.97438 * 22 21 20 24 24 C 1.36552 * 118.19808 * 179.97438 * 23 22 21 25 25 C 1.39419 * 119.94283 * 0.02562 * 24 23 22 26 26 N 1.31017 * 121.70778 * 0.27867 * 25 24 23 27 27 C 1.33747 * 121.34937 * 359.43360 * 26 25 24 28 28 C 1.38407 * 119.71230 * 179.97438 * 19 17 16 29 29 C 1.53001 * 109.46677 * 59.99725 * 14 13 12 30 30 C 1.52999 * 109.46905 * 205.00190 * 10 9 7 31 31 H 0.97001 * 120.00721 * 359.97438 * 1 2 3 32 32 H 0.96994 * 120.00111 * 359.97438 * 9 7 2 33 33 H 1.08991 * 109.47549 * 299.99692 * 12 10 9 34 34 H 1.09001 * 109.46870 * 60.00595 * 12 10 9 35 35 H 1.09003 * 109.47432 * 179.97438 * 13 12 10 36 36 H 1.09008 * 109.47023 * 60.00652 * 13 12 10 37 37 H 0.96999 * 120.00359 * 265.00210 * 16 14 13 38 38 H 1.08000 * 119.62947 * 0.02562 * 20 19 17 39 39 H 1.08000 * 120.00507 * 180.02562 * 21 20 19 40 40 H 1.08006 * 120.89914 * 359.97438 * 23 22 21 41 41 H 1.08003 * 120.03065 * 179.97438 * 24 23 22 42 42 H 1.08002 * 119.14190 * 179.97438 * 25 24 23 43 43 H 1.08007 * 120.23195 * 0.02930 * 28 19 17 44 44 H 1.08996 * 109.47292 * 60.00293 * 29 14 13 45 45 H 1.09004 * 109.47002 * 180.02562 * 29 14 13 46 46 H 1.09000 * 109.47083 * 60.00201 * 30 10 9 47 47 H 1.08996 * 109.47130 * 299.99711 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7100 1.3466 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 -0.5900 12 6 2.4221 -4.0355 1.4365 13 6 3.1866 -5.3608 1.4365 14 6 2.3091 -6.4560 0.8270 15 1 1.3984 -6.5618 1.4166 16 7 3.0414 -7.7247 0.8265 17 6 3.0329 -8.5081 1.9232 18 8 2.4173 -8.1620 2.9125 19 6 3.7717 -9.7891 1.9226 20 6 4.4803 -10.1842 0.7746 21 6 5.1663 -11.3561 0.7512 22 6 5.1712 -12.1897 1.8827 23 6 5.8738 -13.4102 1.8850 24 6 5.8383 -14.1730 3.0171 25 6 5.1191 -13.7357 4.1286 26 7 4.4617 -12.6025 4.1211 27 6 4.4602 -11.8059 3.0467 28 6 3.7593 -10.5887 3.0523 29 6 1.9452 -6.0771 -0.6100 30 6 1.1811 -4.7521 -0.6102 31 1 -0.4851 0.8400 0.0004 32 1 0.3557 -2.3881 0.0002 33 1 3.0470 -3.2552 1.8707 34 1 1.5114 -4.1418 2.0258 35 1 3.4464 -5.6304 2.4602 36 1 4.0974 -5.2548 0.8470 37 1 3.5324 -8.0011 0.0370 38 1 4.4798 -9.5482 -0.0983 39 1 5.7070 -11.6477 -0.1370 40 1 6.4257 -13.7341 1.0150 41 1 6.3662 -15.1145 3.0512 42 1 5.0995 -14.3495 5.0170 43 1 3.2126 -10.2800 3.9311 44 1 2.8558 -5.9711 -1.1995 45 1 1.3196 -6.8571 -1.0440 46 1 0.9219 -4.4822 -1.6340 47 1 0.2704 -4.8584 -0.0208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034757934.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:50 Heat of formation + Delta-G solvation = 17.677234 kcal Electronic energy + Delta-G solvation = -27745.810303 eV Core-core repulsion = 23892.809074 eV Total energy + Delta-G solvation = -3853.001229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.34430 -40.06076 -38.15168 -37.02180 -34.93909 -33.94151 -33.12864 -31.38288 -30.47396 -30.43051 -30.35074 -27.48738 -25.20675 -24.33941 -23.54421 -22.59229 -22.35739 -21.43405 -20.74771 -19.63830 -18.66093 -17.95695 -17.34768 -17.01964 -16.43586 -16.10819 -15.26778 -15.11336 -14.94486 -14.62883 -14.53057 -14.31546 -14.01840 -13.90961 -13.74519 -13.55108 -13.51720 -13.04220 -12.56284 -12.30251 -12.16137 -12.07618 -11.95756 -11.80583 -11.43143 -11.07983 -10.99944 -10.82271 -10.75882 -10.66868 -10.16579 -10.10560 -10.04944 -9.95510 -9.75058 -9.58166 -9.30694 -9.00449 -8.84176 -8.74746 -6.92149 -5.73952 -3.02362 -0.18861 0.17607 1.43905 2.08537 2.93611 3.04277 3.44728 3.50327 3.52542 3.68828 3.81628 4.06583 4.21316 4.36317 4.39531 4.47977 4.60961 4.65553 4.70081 4.90636 4.99961 5.04334 5.27334 5.28966 5.38355 5.42993 5.53025 5.56937 5.61342 5.68413 5.72831 5.77031 5.83941 5.86586 5.88536 6.00724 6.04583 6.23278 6.25158 6.27755 6.30829 6.48932 6.57519 6.65394 6.74124 7.00543 7.16961 7.37174 7.43205 7.73147 8.07248 8.44912 9.55934 10.14719 10.49167 11.48864 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033255 B = 0.001755 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.774390 B =15954.108860 C =16085.360377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.124 4.124 14 C 0.145 3.855 15 H 0.090 0.910 16 N -0.718 5.718 17 C 0.555 3.445 18 O -0.529 6.529 19 C -0.115 4.115 20 C -0.090 4.090 21 C -0.100 4.100 22 C -0.088 4.088 23 C -0.061 4.061 24 C -0.169 4.169 25 C 0.130 3.870 26 N -0.465 5.465 27 C 0.117 3.883 28 C -0.023 4.023 29 C -0.119 4.119 30 C -0.120 4.120 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.397 0.603 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.162 0.838 43 H 0.152 0.848 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.849 -31.844 0.390 34.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.163 4.163 14 C 0.041 3.959 15 H 0.108 0.892 16 N -0.369 5.369 17 C 0.341 3.659 18 O -0.406 6.406 19 C -0.120 4.120 20 C -0.109 4.109 21 C -0.119 4.119 22 C -0.091 4.091 23 C -0.087 4.087 24 C -0.189 4.189 25 C -0.044 4.044 26 N -0.173 5.173 27 C -0.004 4.004 28 C -0.043 4.043 29 C -0.157 4.157 30 C -0.159 4.159 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.232 0.768 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.179 0.821 43 H 0.169 0.831 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.990 -31.033 1.771 33.316 hybrid contribution 0.969 0.470 -1.063 1.513 sum 12.959 -30.563 0.708 33.204 Atomic orbital electron populations 1.69670 1.05083 1.25464 1.57947 1.24737 0.95503 0.97652 1.03198 0.86142 0.78775 0.84294 0.77152 1.20605 1.21939 1.21919 1.19291 0.91002 0.84162 1.42283 0.91172 1.42437 1.05796 0.99798 1.88544 1.20241 0.94278 0.85981 0.92791 0.93605 1.22226 0.99809 0.94458 1.00826 1.21905 0.98554 0.95351 1.00512 1.21170 0.95524 0.81481 0.97682 0.89211 1.46079 1.53128 1.21879 1.15808 1.18164 0.80776 0.83474 0.83456 1.90816 1.43207 1.73543 1.32997 1.19986 1.00877 0.96055 0.95063 1.20985 0.95888 0.96705 0.97275 1.20875 0.99584 0.94076 0.97383 1.18966 0.98736 0.96075 0.95276 1.21531 0.96000 0.92483 0.98704 1.21991 1.00992 1.01515 0.94362 1.23049 0.91183 0.92188 0.97961 1.68050 1.17975 1.04662 1.26629 1.18780 0.97135 0.94869 0.89617 1.21283 0.94543 0.90300 0.98128 1.21748 1.00866 0.98368 0.94752 1.21744 0.98974 0.93400 1.01816 0.93614 0.78304 0.91762 0.92443 0.92290 0.92283 0.76819 0.84944 0.84553 0.84096 0.84244 0.82085 0.83064 0.91546 0.91818 0.91317 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 3 Si 0.90 22.54 29.55 -169.99 -5.02 17.52 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 7 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.11 5.12 -53.43 -0.27 -18.39 16 10 C 0.18 3.43 2.77 -67.93 -0.19 3.24 16 11 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 12 C -0.13 -2.41 5.50 -26.73 -0.15 -2.56 16 13 C -0.12 -1.84 5.49 -26.73 -0.15 -1.99 16 14 C 0.14 1.90 2.45 -67.93 -0.17 1.73 16 15 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 16 N -0.72 -7.74 5.03 -54.74 -0.28 -8.02 16 17 C 0.55 7.11 7.73 -12.31 -0.10 7.02 16 18 O -0.53 -8.92 15.96 5.32 0.08 -8.84 16 19 C -0.11 -1.20 5.87 -105.01 -0.62 -1.82 16 20 C -0.09 -0.66 9.44 -39.57 -0.37 -1.04 16 21 C -0.10 -0.65 9.74 -39.58 -0.39 -1.04 16 22 C -0.09 -0.72 5.75 -106.73 -0.61 -1.33 16 23 C -0.06 -0.34 9.89 -39.21 -0.39 -0.73 16 24 C -0.17 -0.84 10.03 -39.75 -0.40 -1.24 16 25 C 0.13 0.89 11.15 -17.46 -0.19 0.69 16 26 N -0.47 -4.83 10.34 -10.98 -0.11 -4.94 16 27 C 0.12 1.23 6.60 -84.88 -0.56 0.67 16 28 C -0.02 -0.26 9.56 -38.68 -0.37 -0.63 16 29 C -0.12 -1.43 5.39 -26.75 -0.14 -1.57 16 30 C -0.12 -1.90 5.39 -26.75 -0.14 -2.04 16 31 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.38 10.21 7.80 -40.82 -0.32 9.89 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 37 H 0.40 2.98 6.58 -40.82 -0.27 2.71 16 38 H 0.13 0.62 6.34 -52.49 -0.33 0.28 16 39 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 41 H 0.14 0.26 8.06 -52.48 -0.42 -0.16 16 42 H 0.16 0.61 8.06 -52.49 -0.42 0.18 16 43 H 0.15 1.87 7.61 -52.48 -0.40 1.47 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 386.04 15.07 5.82 5.82 Total: -1.00 -34.86 386.04 -10.99 -45.85 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.75 Total: 8.52 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -5.18 Total: -9.87 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.06 Total: -59.00 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.84 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.86 -10.99 -45.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034757934.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.523 kcal (2) G-P(sol) polarization free energy of solvation -34.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds