Wall clock time and date at job start Tue Mar 31 2020 22:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86804 * 119.99497 * 2 1 4 4 H 1.48494 * 109.46830 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47048 * 300.00105 * 3 2 1 6 6 H 1.48494 * 109.47216 * 60.00540 * 3 2 1 7 7 C 1.38806 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99909 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99779 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.46991 * 324.99986 * 10 9 7 12 12 C 1.52997 * 109.46876 * 84.99839 * 10 9 7 13 13 C 1.53002 * 109.46791 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47705 * 300.00331 * 13 12 10 15 15 H 1.09003 * 109.46716 * 300.00117 * 14 13 12 16 16 N 1.46492 * 109.47409 * 179.97438 * 14 13 12 17 17 C 1.34777 * 119.99959 * 85.00078 * 16 14 13 18 18 O 1.21551 * 119.99831 * 0.02562 * 17 16 14 19 19 C 1.47879 * 120.00263 * 179.97438 * 17 16 14 20 20 C 1.40575 * 119.70858 * 359.97438 * 19 17 16 21 21 C 1.35813 * 120.74099 * 179.97438 * 20 19 17 22 22 C 1.40545 * 119.98144 * 0.08736 * 21 20 19 23 23 C 1.40823 * 121.13955 * 179.97438 * 22 21 20 24 24 C 1.36552 * 118.19808 * 179.97438 * 23 22 21 25 25 C 1.39419 * 119.94283 * 0.02562 * 24 23 22 26 26 N 1.31017 * 121.70778 * 0.27867 * 25 24 23 27 27 C 1.33747 * 121.34937 * 359.43360 * 26 25 24 28 28 C 1.38407 * 119.71230 * 179.97438 * 19 17 16 29 29 C 1.53001 * 109.46677 * 59.99725 * 14 13 12 30 30 C 1.52999 * 109.46905 * 205.00190 * 10 9 7 31 31 H 0.97001 * 120.00721 * 359.97438 * 1 2 3 32 32 H 0.96994 * 120.00111 * 359.97438 * 9 7 2 33 33 H 1.08991 * 109.47549 * 299.99692 * 12 10 9 34 34 H 1.09001 * 109.46870 * 60.00595 * 12 10 9 35 35 H 1.09003 * 109.47432 * 179.97438 * 13 12 10 36 36 H 1.09008 * 109.47023 * 60.00652 * 13 12 10 37 37 H 0.96999 * 120.00359 * 265.00210 * 16 14 13 38 38 H 1.08000 * 119.62947 * 0.02562 * 20 19 17 39 39 H 1.08000 * 120.00507 * 180.02562 * 21 20 19 40 40 H 1.08006 * 120.89914 * 359.97438 * 23 22 21 41 41 H 1.08003 * 120.03065 * 179.97438 * 24 23 22 42 42 H 1.08002 * 119.14190 * 179.97438 * 25 24 23 43 43 H 1.08007 * 120.23195 * 0.02930 * 28 19 17 44 44 H 1.08996 * 109.47292 * 60.00293 * 29 14 13 45 45 H 1.09004 * 109.47002 * 180.02562 * 29 14 13 46 46 H 1.09000 * 109.47083 * 60.00201 * 30 10 9 47 47 H 1.08996 * 109.47130 * 299.99711 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7100 1.3466 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 -0.5900 12 6 2.4221 -4.0355 1.4365 13 6 3.1866 -5.3608 1.4365 14 6 2.3091 -6.4560 0.8270 15 1 1.3984 -6.5618 1.4166 16 7 3.0414 -7.7247 0.8265 17 6 3.0329 -8.5081 1.9232 18 8 2.4173 -8.1620 2.9125 19 6 3.7717 -9.7891 1.9226 20 6 4.4803 -10.1842 0.7746 21 6 5.1663 -11.3561 0.7512 22 6 5.1712 -12.1897 1.8827 23 6 5.8738 -13.4102 1.8850 24 6 5.8383 -14.1730 3.0171 25 6 5.1191 -13.7357 4.1286 26 7 4.4617 -12.6025 4.1211 27 6 4.4602 -11.8059 3.0467 28 6 3.7593 -10.5887 3.0523 29 6 1.9452 -6.0771 -0.6100 30 6 1.1811 -4.7521 -0.6102 31 1 -0.4851 0.8400 0.0004 32 1 0.3557 -2.3881 0.0002 33 1 3.0470 -3.2552 1.8707 34 1 1.5114 -4.1418 2.0258 35 1 3.4464 -5.6304 2.4602 36 1 4.0974 -5.2548 0.8470 37 1 3.5324 -8.0011 0.0370 38 1 4.4798 -9.5482 -0.0983 39 1 5.7070 -11.6477 -0.1370 40 1 6.4257 -13.7341 1.0150 41 1 6.3662 -15.1145 3.0512 42 1 5.0995 -14.3495 5.0170 43 1 3.2126 -10.2800 3.9311 44 1 2.8558 -5.9711 -1.1995 45 1 1.3196 -6.8571 -1.0440 46 1 0.9219 -4.4822 -1.6340 47 1 0.2704 -4.8584 -0.0208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034757934.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:49 Heat of formation + Delta-G solvation = -5.537091 kcal Electronic energy + Delta-G solvation = -27746.816952 eV Core-core repulsion = 23892.809074 eV Total energy + Delta-G solvation = -3854.007878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.96922 -41.02656 -39.39048 -37.73571 -36.43234 -34.72775 -34.47835 -32.68119 -31.70131 -31.55864 -31.04373 -28.97573 -26.18912 -25.24083 -24.87277 -23.66619 -23.22478 -22.53970 -21.83033 -20.99651 -19.59077 -18.99349 -18.52393 -17.94957 -17.22766 -17.08082 -16.79900 -16.22831 -15.86709 -15.49496 -15.40352 -15.31738 -15.22227 -15.01523 -14.91512 -14.63808 -14.55566 -13.99645 -13.92188 -13.47795 -13.16656 -13.09228 -12.95530 -12.87342 -12.73549 -12.53288 -12.42759 -12.29843 -12.10343 -12.02656 -11.66594 -11.56800 -11.47856 -11.21609 -11.09277 -10.84208 -10.49646 -10.16029 -9.81662 -9.33829 -8.98815 -7.93148 -5.21166 -0.78715 -0.36684 0.85860 1.44838 1.46702 1.47739 1.57413 1.99011 2.25276 2.56807 3.08297 3.26886 3.39880 3.52157 3.60979 3.75416 3.81687 3.85270 3.90237 3.96093 4.04193 4.07283 4.27309 4.30541 4.37549 4.40156 4.52272 4.57675 4.59897 4.65431 4.73178 4.84412 4.87384 4.94468 5.00830 5.08696 5.11225 5.13331 5.17093 5.25689 5.28097 5.31230 5.42908 5.50727 5.54284 5.55924 5.64194 5.77696 6.29799 6.49211 6.90806 7.14909 7.35153 8.13163 8.35191 9.30758 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033255 B = 0.001755 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.774390 B =15954.108860 C =16085.360377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.297 1.297 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.739 5.739 10 C 0.172 3.828 11 H 0.051 0.949 12 C -0.123 4.123 13 C -0.113 4.113 14 C 0.151 3.849 15 H 0.063 0.937 16 N -0.698 5.698 17 C 0.553 3.447 18 O -0.581 6.581 19 C -0.120 4.120 20 C -0.096 4.096 21 C -0.083 4.083 22 C -0.102 4.102 23 C -0.057 4.057 24 C -0.164 4.164 25 C 0.125 3.875 26 N -0.516 5.516 27 C 0.092 3.908 28 C -0.054 4.054 29 C -0.104 4.104 30 C -0.114 4.114 31 H 0.249 0.751 32 H 0.371 0.629 33 H 0.040 0.960 34 H 0.036 0.964 35 H 0.044 0.956 36 H 0.080 0.920 37 H 0.418 0.582 38 H 0.165 0.835 39 H 0.180 0.820 40 H 0.181 0.819 41 H 0.178 0.822 42 H 0.185 0.815 43 H 0.119 0.881 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.188 -34.918 -2.463 38.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.225 1.225 7 C -0.367 4.367 8 H 0.094 0.906 9 N -0.378 5.378 10 C 0.064 3.936 11 H 0.069 0.931 12 C -0.164 4.164 13 C -0.152 4.152 14 C 0.047 3.953 15 H 0.082 0.918 16 N -0.350 5.350 17 C 0.341 3.659 18 O -0.462 6.462 19 C -0.125 4.125 20 C -0.114 4.114 21 C -0.101 4.101 22 C -0.104 4.104 23 C -0.083 4.083 24 C -0.183 4.183 25 C -0.048 4.048 26 N -0.225 5.225 27 C -0.028 4.028 28 C -0.074 4.074 29 C -0.143 4.143 30 C -0.153 4.153 31 H 0.058 0.942 32 H 0.202 0.798 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.257 0.743 38 H 0.183 0.817 39 H 0.197 0.803 40 H 0.198 0.802 41 H 0.196 0.804 42 H 0.202 0.798 43 H 0.137 0.863 44 H 0.111 0.889 45 H 0.109 0.891 46 H 0.088 0.912 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.392 -34.157 -1.120 37.482 hybrid contribution 0.001 1.236 -0.092 1.240 sum 15.393 -32.921 -1.212 36.363 Atomic orbital electron populations 1.69827 1.06610 1.25806 1.60019 1.25547 0.96360 1.01050 1.04196 0.85109 0.78316 0.80065 0.76530 1.18950 1.21956 1.22500 1.19677 0.91436 0.85302 1.40240 0.90592 1.42688 1.05452 1.01168 1.88531 1.20502 0.94659 0.85018 0.93402 0.93111 1.22036 0.98917 0.95845 0.99629 1.21770 0.99115 0.93888 1.00409 1.20909 0.94355 0.81900 0.98148 0.91837 1.45786 1.52561 1.20522 1.16124 1.18619 0.80109 0.84250 0.82953 1.90790 1.45537 1.74848 1.35041 1.19855 1.01638 0.94713 0.96257 1.21252 0.95528 0.97823 0.96817 1.21360 0.98080 0.92757 0.97901 1.19312 0.98674 0.97599 0.94822 1.22026 0.95036 0.91050 1.00147 1.22413 0.99968 1.02663 0.93279 1.23655 0.90143 0.91219 0.99743 1.68008 1.20334 1.06457 1.27658 1.18875 0.98174 0.94692 0.91081 1.21166 0.96240 0.92048 0.97922 1.21652 1.01991 0.96638 0.93985 1.21635 0.98341 0.94153 1.01126 0.94184 0.79759 0.94077 0.94476 0.93730 0.90156 0.74305 0.81725 0.80279 0.80156 0.80446 0.79812 0.86258 0.88871 0.89112 0.91165 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.59 13.06 21.65 0.28 -60.31 16 2 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 3 Si 0.97 46.89 29.55 68.60 2.03 48.92 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 7 C -0.23 -13.15 9.93 84.03 0.83 -12.31 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 9 N -0.74 -37.66 5.12 -322.94 -1.65 -39.32 16 10 C 0.17 6.66 2.77 44.99 0.12 6.78 16 11 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 12 C -0.12 -4.62 5.50 30.59 0.17 -4.45 16 13 C -0.11 -3.30 5.49 30.60 0.17 -3.14 16 14 C 0.15 3.82 2.45 44.99 0.11 3.94 16 15 H 0.06 1.99 7.58 -2.39 -0.02 1.97 16 16 N -0.70 -13.88 5.03 -445.38 -2.24 -16.12 16 17 C 0.55 14.47 7.73 86.80 0.67 15.15 16 18 O -0.58 -21.20 15.96 -3.88 -0.06 -21.26 16 19 C -0.12 -2.53 5.87 -20.11 -0.12 -2.65 16 20 C -0.10 -1.14 9.44 22.28 0.21 -0.93 16 21 C -0.08 -0.75 9.74 22.27 0.22 -0.53 16 22 C -0.10 -1.40 5.75 -21.23 -0.12 -1.53 16 23 C -0.06 -0.40 9.89 22.51 0.22 -0.18 16 24 C -0.16 -1.06 10.03 22.16 0.22 -0.84 16 25 C 0.13 1.56 11.15 85.10 0.95 2.51 16 26 N -0.52 -11.16 10.34 -188.66 -1.95 -13.11 16 27 C 0.09 1.98 6.60 40.25 0.27 2.24 16 28 C -0.05 -1.35 9.56 22.85 0.22 -1.13 16 29 C -0.10 -2.21 5.39 30.58 0.16 -2.04 16 30 C -0.11 -3.48 5.39 30.58 0.16 -3.31 16 31 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.37 20.45 7.80 -92.71 -0.72 19.73 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.42 4.71 6.58 -92.71 -0.61 4.10 16 38 H 0.17 0.74 6.34 -2.91 -0.02 0.73 16 39 H 0.18 0.08 8.06 -2.91 -0.02 0.05 16 40 H 0.18 -0.20 8.06 -2.91 -0.02 -0.22 16 41 H 0.18 -0.24 8.06 -2.91 -0.02 -0.26 16 42 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 43 H 0.12 3.55 7.61 -2.91 -0.02 3.53 16 44 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 46 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -82.75 386.04 1.01 -81.74 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -0.33 Total: 26.06 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 4.94 Total: -6.60 kcal Atomic # 7 Polarization: -123.30 SS G_CDS: -5.56 Total: -128.86 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.06 Total: -21.26 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -82.75 1.01 -81.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034757934.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.201 kcal (2) G-P(sol) polarization free energy of solvation -82.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds