Wall clock time and date at job start Tue Mar 31 2020 22:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99649 * 2 1 4 4 H 1.48498 * 109.47451 * 274.99663 * 3 2 1 5 5 H 1.48505 * 109.47304 * 34.99640 * 3 2 1 6 6 H 1.48496 * 109.46968 * 154.99616 * 3 2 1 7 7 C 1.38804 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00007 * 174.88133 * 7 2 1 9 9 N 1.36941 * 120.00401 * 354.88552 * 7 2 1 10 10 C 1.47167 * 135.99520 * 354.48743 * 9 7 2 11 11 C 1.52940 * 87.85657 * 206.92544 * 10 9 7 12 12 C 1.47155 * 136.00197 * 174.85480 * 9 7 2 13 13 C 1.52553 * 114.11613 * 87.95113 * 11 10 9 14 14 C 1.53353 * 109.12597 * 190.31557 * 13 11 10 15 15 N 1.46885 * 108.75572 * 307.75446 * 14 13 11 16 16 C 1.34767 * 120.46511 * 235.60589 * 15 14 13 17 17 O 1.21782 * 119.99980 * 183.98495 * 16 15 14 18 18 C 1.46214 * 120.00123 * 3.98555 * 16 15 14 19 19 C 1.41736 * 126.79594 * 306.26728 * 18 16 15 20 20 C 1.34520 * 107.77418 * 179.82931 * 19 18 16 21 21 N 1.36959 * 109.59957 * 0.44208 * 20 19 18 22 22 C 1.36705 * 131.34286 * 179.74049 * 21 20 19 23 23 C 1.35001 * 120.75303 * 179.97438 * 22 21 20 24 24 C 1.40314 * 120.37815 * 0.02562 * 23 22 21 25 25 C 1.36332 * 119.45867 * 359.97438 * 24 23 22 26 26 C 1.36934 * 108.74329 * 359.72023 * 21 20 19 27 27 C 1.46893 * 119.07123 * 55.62833 * 15 14 13 28 28 C 1.52558 * 114.11683 * 220.61996 * 11 10 9 29 29 H 0.96997 * 120.00296 * 0.02562 * 1 2 3 30 30 H 1.08996 * 113.49489 * 321.67142 * 10 9 7 31 31 H 1.09004 * 113.48714 * 92.17911 * 10 9 7 32 32 H 1.08991 * 113.49103 * 267.82841 * 12 9 7 33 33 H 1.08997 * 113.48891 * 38.33889 * 12 9 7 34 34 H 1.08999 * 109.52484 * 310.21180 * 13 11 10 35 35 H 1.08998 * 109.52892 * 70.42548 * 13 11 10 36 36 H 1.09009 * 109.59043 * 187.97621 * 14 13 11 37 37 H 1.09005 * 109.59249 * 67.54000 * 14 13 11 38 38 H 1.07996 * 126.11161 * 359.96701 * 19 18 16 39 39 H 1.07998 * 125.19756 * 180.14277 * 20 19 18 40 40 H 1.07994 * 119.62734 * 359.95431 * 22 21 20 41 41 H 1.08000 * 119.81468 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.26983 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.34496 * 180.02562 * 25 24 23 44 44 H 1.08996 * 109.59344 * 184.59272 * 27 15 14 45 45 H 1.09004 * 109.59642 * 64.14331 * 27 15 14 46 46 H 1.09004 * 109.53042 * 289.56816 * 28 11 10 47 47 H 1.09006 * 109.52863 * 49.70830 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3920 2.1075 -1.3947 5 1 1.5043 2.6200 0.8030 6 1 3.5964 1.4121 0.5918 7 6 2.0103 -1.2021 0.0005 8 1 3.0871 -1.2039 -0.0829 9 7 1.3298 -2.3857 0.1068 10 6 -0.0683 -2.7864 0.3319 11 6 0.4623 -4.0842 0.9427 12 6 1.6766 -3.8147 0.0525 13 6 0.7545 -3.9959 2.4374 14 6 1.5132 -5.2542 2.8763 15 7 0.7653 -6.4367 2.4291 16 6 0.3876 -7.3809 3.3134 17 8 -0.1681 -8.3923 2.9242 18 6 0.6450 -7.1912 4.7402 19 6 1.8923 -6.8985 5.3463 20 6 1.6914 -6.8002 6.6727 21 7 0.3704 -7.0259 6.9552 22 6 -0.3100 -7.0395 8.1409 23 6 -1.6361 -7.2904 8.1729 24 6 -2.3395 -7.5427 6.9853 25 6 -1.6729 -7.5322 5.7961 26 6 -0.2949 -7.2689 5.7833 27 6 0.4352 -6.5758 1.0046 28 6 -0.3316 -5.3271 0.5522 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5923 -2.1522 1.0469 31 1 -0.6305 -2.9379 -0.5896 32 1 1.5884 -4.2456 -0.9448 33 1 2.6271 -4.0496 0.5315 34 1 1.3636 -3.1145 2.6380 35 1 -0.1833 -3.9251 2.9884 36 1 1.6020 -5.2672 3.9626 37 1 2.5060 -5.2580 2.4263 38 1 2.8351 -6.7742 4.8344 39 1 2.4558 -6.5819 7.4037 40 1 0.2193 -6.8476 9.0624 41 1 -2.1587 -7.2970 9.1181 42 1 -3.4004 -7.7428 7.0130 43 1 -2.2002 -7.7241 4.8733 44 1 -0.1861 -7.4593 0.8579 45 1 1.3530 -6.6713 0.4243 46 1 -1.3076 -5.3033 1.0370 47 1 -0.4627 -5.3507 -0.5297 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035747008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:17 Heat of formation + Delta-G solvation = 109.010625 kcal Electronic energy + Delta-G solvation = -29530.947457 eV Core-core repulsion = 25681.906741 eV Total energy + Delta-G solvation = -3849.040716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.47137 -40.08074 -38.55257 -36.78214 -35.58244 -33.28805 -32.44821 -31.13876 -30.29362 -30.10281 -28.24755 -26.78854 -24.88850 -24.19212 -23.84723 -23.11956 -22.45180 -21.62734 -20.92180 -19.41674 -18.09139 -17.23948 -16.65524 -16.57556 -16.31869 -16.02954 -15.57156 -15.34807 -14.88136 -14.76177 -14.55824 -14.45560 -13.99052 -13.75556 -13.50784 -13.21955 -13.01858 -12.71788 -12.47704 -12.19746 -12.08183 -11.94628 -11.88386 -11.60374 -11.55354 -11.08666 -10.92648 -10.83948 -10.76601 -10.57020 -10.34729 -10.19189 -9.70395 -9.64449 -9.53546 -9.13816 -8.83381 -8.73950 -8.28486 -7.51491 -6.82824 -5.75091 -3.05371 0.54673 1.06416 2.34428 2.41826 2.98540 3.22831 3.39564 3.44630 3.46821 3.50617 4.21783 4.48193 4.53612 4.55496 4.67222 4.82777 4.97289 5.07651 5.13706 5.19661 5.28471 5.44270 5.45295 5.47070 5.51464 5.61115 5.63922 5.71428 5.79417 5.90825 5.95440 5.99157 6.02836 6.10470 6.11676 6.26634 6.35741 6.42258 6.49043 6.59939 6.64482 6.67534 6.75965 6.87960 6.92939 7.01571 7.25656 7.40920 7.58032 7.67210 8.00189 8.41893 9.06735 9.73384 10.70037 11.43508 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014965 B = 0.002877 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.621127 B = 9729.365280 C =10455.917284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.216 4.216 8 H 0.080 0.920 9 N -0.608 5.608 10 C 0.173 3.827 11 C -0.115 4.115 12 C 0.127 3.873 13 C -0.093 4.093 14 C 0.105 3.895 15 N -0.597 5.597 16 C 0.593 3.407 17 O -0.555 6.555 18 C -0.223 4.223 19 C -0.108 4.108 20 C -0.061 4.061 21 N -0.340 5.340 22 C 0.049 3.951 23 C -0.144 4.144 24 C -0.120 4.120 25 C -0.081 4.081 26 C 0.097 3.903 27 C 0.116 3.884 28 C -0.113 4.113 29 H 0.253 0.747 30 H 0.059 0.941 31 H 0.026 0.974 32 H 0.030 0.970 33 H 0.036 0.964 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.154 0.846 39 H 0.173 0.827 40 H 0.163 0.837 41 H 0.147 0.853 42 H 0.137 0.863 43 H 0.145 0.855 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.062 0.938 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.924 -16.053 16.817 23.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.343 4.343 8 H 0.097 0.903 9 N -0.333 5.333 10 C 0.047 3.953 11 C -0.117 4.117 12 C 0.001 3.999 13 C -0.131 4.131 14 C -0.018 4.018 15 N -0.329 5.329 16 C 0.382 3.618 17 O -0.434 6.434 18 C -0.233 4.233 19 C -0.129 4.129 20 C -0.186 4.186 21 N -0.004 5.004 22 C -0.072 4.072 23 C -0.164 4.164 24 C -0.141 4.141 25 C -0.100 4.100 26 C -0.011 4.011 27 C -0.006 4.006 28 C -0.152 4.152 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.172 0.828 39 H 0.190 0.810 40 H 0.180 0.820 41 H 0.164 0.836 42 H 0.155 0.845 43 H 0.163 0.837 44 H 0.105 0.895 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.130 -16.159 16.827 23.357 hybrid contribution 0.488 1.162 -0.156 1.270 sum -0.642 -14.998 16.671 22.434 Atomic orbital electron populations 1.69850 1.04995 1.25234 1.56545 1.24792 0.95624 0.97478 1.02587 0.86141 0.78692 0.83704 0.77474 1.21728 1.21681 1.20569 1.18928 0.90211 0.81631 1.43542 0.90269 1.45637 1.04645 0.99217 1.83839 1.21935 0.88323 0.88809 0.96265 1.22081 0.98753 0.95747 0.95080 1.22395 0.95190 0.86800 0.95542 1.21401 1.00383 0.97034 0.94327 1.21989 0.94826 0.84431 1.00535 1.47971 1.55448 1.21522 1.07928 1.17137 0.77722 0.82435 0.84466 1.90782 1.44207 1.28174 1.80266 1.19284 0.93749 1.17987 0.92244 1.20981 0.97591 1.01710 0.92664 1.21670 0.83447 1.15865 0.97660 1.41447 1.08574 1.44492 1.05875 1.21662 0.93725 1.03552 0.88266 1.20752 0.92705 1.03051 0.99941 1.21060 1.00710 1.00618 0.91663 1.20676 0.90791 0.98674 0.99822 1.18494 0.92570 1.05322 0.84701 1.21610 0.99992 0.99078 0.79937 1.21727 0.98712 0.93731 1.01028 0.93742 0.92231 0.95577 0.95275 0.94557 0.89591 0.92296 0.89257 0.91405 0.82807 0.80959 0.82012 0.83580 0.84550 0.83706 0.89482 0.91556 0.91916 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.41 11.75 55.49 0.65 -26.76 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 22.09 29.56 -169.99 -5.02 17.06 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.22 -6.01 10.74 -15.06 -0.16 -6.17 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.61 -15.41 3.54 -184.68 -0.65 -16.07 16 10 C 0.17 4.03 6.39 -8.21 -0.05 3.98 16 11 C -0.12 -2.10 0.84 -155.02 -0.13 -2.23 16 12 C 0.13 2.56 7.63 -8.21 -0.06 2.50 16 13 C -0.09 -1.57 5.27 -26.78 -0.14 -1.72 16 14 C 0.10 1.47 5.96 -3.65 -0.02 1.44 16 15 N -0.60 -8.85 2.94 -174.32 -0.51 -9.36 16 16 C 0.59 9.43 7.52 -13.06 -0.10 9.34 16 17 O -0.55 -10.35 16.51 5.12 0.08 -10.26 16 18 C -0.22 -3.10 5.06 -104.46 -0.53 -3.63 16 19 C -0.11 -1.20 8.51 -39.56 -0.34 -1.53 16 20 C -0.06 -0.58 11.53 -16.58 -0.19 -0.77 16 21 N -0.34 -3.57 2.92 -60.81 -0.18 -3.74 16 22 C 0.05 0.37 10.89 -16.53 -0.18 0.19 16 23 C -0.14 -1.01 9.98 -39.95 -0.40 -1.41 16 24 C -0.12 -1.03 10.09 -39.49 -0.40 -1.43 16 25 C -0.08 -0.93 10.06 -39.50 -0.40 -1.33 16 26 C 0.10 1.26 6.72 -83.92 -0.56 0.70 16 27 C 0.12 1.68 6.34 -3.64 -0.02 1.66 16 28 C -0.11 -1.75 5.30 -26.77 -0.14 -1.90 16 29 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.06 1.55 7.48 -51.93 -0.39 1.16 16 31 H 0.03 0.64 8.09 -51.93 -0.42 0.22 16 32 H 0.03 0.59 8.06 -51.93 -0.42 0.17 16 33 H 0.04 0.70 7.53 -51.93 -0.39 0.30 16 34 H 0.09 1.64 7.95 -51.93 -0.41 1.22 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.14 4.69 -51.92 -0.24 0.90 16 37 H 0.07 0.91 7.60 -51.93 -0.39 0.52 16 38 H 0.15 1.42 7.91 -52.49 -0.42 1.01 16 39 H 0.17 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 43 H 0.15 1.70 8.06 -52.48 -0.42 1.27 16 44 H 0.09 1.29 6.99 -51.93 -0.36 0.93 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 LS Contribution 378.11 15.07 5.70 5.70 Total: -1.00 -34.84 378.11 -10.65 -45.50 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.80 Total: 0.56 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -3.92 Total: -2.63 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.69 Total: -55.93 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.84 -10.65 -45.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035747008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.507 kcal (2) G-P(sol) polarization free energy of solvation -34.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds