Wall clock time and date at job start Tue Mar 31 2020 22:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99649 * 2 1 4 4 H 1.48498 * 109.47451 * 274.99663 * 3 2 1 5 5 H 1.48505 * 109.47304 * 34.99640 * 3 2 1 6 6 H 1.48496 * 109.46968 * 154.99616 * 3 2 1 7 7 C 1.38804 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00007 * 174.88133 * 7 2 1 9 9 N 1.36941 * 120.00401 * 354.88552 * 7 2 1 10 10 C 1.47167 * 135.99520 * 354.48743 * 9 7 2 11 11 C 1.52940 * 87.85657 * 206.92544 * 10 9 7 12 12 C 1.47155 * 136.00197 * 174.85480 * 9 7 2 13 13 C 1.52553 * 114.11613 * 87.95113 * 11 10 9 14 14 C 1.53353 * 109.12597 * 190.31557 * 13 11 10 15 15 N 1.46885 * 108.75572 * 307.75446 * 14 13 11 16 16 C 1.34767 * 120.46511 * 235.60589 * 15 14 13 17 17 O 1.21782 * 119.99980 * 183.98495 * 16 15 14 18 18 C 1.46214 * 120.00123 * 3.98555 * 16 15 14 19 19 C 1.41736 * 126.79594 * 306.26728 * 18 16 15 20 20 C 1.34520 * 107.77418 * 179.82931 * 19 18 16 21 21 N 1.36959 * 109.59957 * 0.44208 * 20 19 18 22 22 C 1.36705 * 131.34286 * 179.74049 * 21 20 19 23 23 C 1.35001 * 120.75303 * 179.97438 * 22 21 20 24 24 C 1.40314 * 120.37815 * 0.02562 * 23 22 21 25 25 C 1.36332 * 119.45867 * 359.97438 * 24 23 22 26 26 C 1.36934 * 108.74329 * 359.72023 * 21 20 19 27 27 C 1.46893 * 119.07123 * 55.62833 * 15 14 13 28 28 C 1.52558 * 114.11683 * 220.61996 * 11 10 9 29 29 H 0.96997 * 120.00296 * 0.02562 * 1 2 3 30 30 H 1.08996 * 113.49489 * 321.67142 * 10 9 7 31 31 H 1.09004 * 113.48714 * 92.17911 * 10 9 7 32 32 H 1.08991 * 113.49103 * 267.82841 * 12 9 7 33 33 H 1.08997 * 113.48891 * 38.33889 * 12 9 7 34 34 H 1.08999 * 109.52484 * 310.21180 * 13 11 10 35 35 H 1.08998 * 109.52892 * 70.42548 * 13 11 10 36 36 H 1.09009 * 109.59043 * 187.97621 * 14 13 11 37 37 H 1.09005 * 109.59249 * 67.54000 * 14 13 11 38 38 H 1.07996 * 126.11161 * 359.96701 * 19 18 16 39 39 H 1.07998 * 125.19756 * 180.14277 * 20 19 18 40 40 H 1.07994 * 119.62734 * 359.95431 * 22 21 20 41 41 H 1.08000 * 119.81468 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.26983 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.34496 * 180.02562 * 25 24 23 44 44 H 1.08996 * 109.59344 * 184.59272 * 27 15 14 45 45 H 1.09004 * 109.59642 * 64.14331 * 27 15 14 46 46 H 1.09004 * 109.53042 * 289.56816 * 28 11 10 47 47 H 1.09006 * 109.52863 * 49.70830 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3920 2.1075 -1.3947 5 1 1.5043 2.6200 0.8030 6 1 3.5964 1.4121 0.5918 7 6 2.0103 -1.2021 0.0005 8 1 3.0871 -1.2039 -0.0829 9 7 1.3298 -2.3857 0.1068 10 6 -0.0683 -2.7864 0.3319 11 6 0.4623 -4.0842 0.9427 12 6 1.6766 -3.8147 0.0525 13 6 0.7545 -3.9959 2.4374 14 6 1.5132 -5.2542 2.8763 15 7 0.7653 -6.4367 2.4291 16 6 0.3876 -7.3809 3.3134 17 8 -0.1681 -8.3923 2.9242 18 6 0.6450 -7.1912 4.7402 19 6 1.8923 -6.8985 5.3463 20 6 1.6914 -6.8002 6.6727 21 7 0.3704 -7.0259 6.9552 22 6 -0.3100 -7.0395 8.1409 23 6 -1.6361 -7.2904 8.1729 24 6 -2.3395 -7.5427 6.9853 25 6 -1.6729 -7.5322 5.7961 26 6 -0.2949 -7.2689 5.7833 27 6 0.4352 -6.5758 1.0046 28 6 -0.3316 -5.3271 0.5522 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5923 -2.1522 1.0469 31 1 -0.6305 -2.9379 -0.5896 32 1 1.5884 -4.2456 -0.9448 33 1 2.6271 -4.0496 0.5315 34 1 1.3636 -3.1145 2.6380 35 1 -0.1833 -3.9251 2.9884 36 1 1.6020 -5.2672 3.9626 37 1 2.5060 -5.2580 2.4263 38 1 2.8351 -6.7742 4.8344 39 1 2.4558 -6.5819 7.4037 40 1 0.2193 -6.8476 9.0624 41 1 -2.1587 -7.2970 9.1181 42 1 -3.4004 -7.7428 7.0130 43 1 -2.2002 -7.7241 4.8733 44 1 -0.1861 -7.4593 0.8579 45 1 1.3530 -6.6713 0.4243 46 1 -1.3076 -5.3033 1.0370 47 1 -0.4627 -5.3507 -0.5297 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035747008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:16 Heat of formation + Delta-G solvation = 89.447923 kcal Electronic energy + Delta-G solvation = -29531.795760 eV Core-core repulsion = 25681.906741 eV Total energy + Delta-G solvation = -3849.889018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.22423 -41.48185 -39.97358 -37.49146 -36.99917 -34.46298 -34.01234 -32.42530 -31.82457 -30.87608 -29.26134 -28.45257 -26.60149 -25.50699 -24.67641 -24.32709 -23.81459 -22.60037 -22.19250 -20.59597 -19.14779 -18.67245 -18.34636 -17.45537 -17.38742 -16.88387 -16.83555 -16.43162 -16.17050 -16.09281 -15.91590 -15.59735 -15.26740 -15.10546 -14.87469 -14.43783 -14.18829 -13.86923 -13.73619 -13.60455 -13.47750 -13.12119 -12.89529 -12.78950 -12.77030 -12.63004 -12.51383 -12.25902 -12.16151 -12.10435 -11.69948 -11.62350 -11.37757 -11.13451 -10.91176 -10.85366 -10.76965 -9.58635 -9.54888 -8.88635 -8.28496 -7.89743 -5.21161 -0.15744 0.34057 1.42706 1.45950 1.47567 1.56961 1.69132 2.00205 2.29666 2.48958 2.60221 3.33369 3.45986 3.58810 3.61470 3.78922 3.89621 3.92079 3.99132 4.08863 4.16851 4.20755 4.26997 4.34446 4.40311 4.47969 4.64968 4.70107 4.77586 4.77999 4.86547 4.88711 4.89287 4.92846 4.96838 5.07614 5.14618 5.19280 5.23453 5.26713 5.34127 5.35050 5.39657 5.53639 5.59251 5.71510 5.76314 5.89614 5.93637 6.35764 6.49885 6.92444 7.23878 7.62472 8.65505 9.29354 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014965 B = 0.002877 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.621127 B = 9729.365280 C =10455.917284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.070 4.070 3 Si 0.978 3.022 4 H -0.290 1.290 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.224 4.224 8 H 0.087 0.913 9 N -0.636 5.636 10 C 0.169 3.831 11 C -0.087 4.087 12 C 0.131 3.869 13 C -0.087 4.087 14 C 0.118 3.882 15 N -0.597 5.597 16 C 0.594 3.406 17 O -0.593 6.593 18 C -0.270 4.270 19 C -0.118 4.118 20 C -0.054 4.054 21 N -0.344 5.344 22 C 0.050 3.950 23 C -0.149 4.149 24 C -0.099 4.099 25 C -0.130 4.130 26 C 0.082 3.918 27 C 0.120 3.880 28 C -0.105 4.105 29 H 0.247 0.753 30 H 0.023 0.977 31 H 0.011 0.989 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.168 0.832 39 H 0.212 0.788 40 H 0.205 0.795 41 H 0.186 0.814 42 H 0.159 0.841 43 H 0.125 0.875 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.058 0.942 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.647 -16.782 19.726 25.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.262 4.262 3 Si 0.806 3.194 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.188 1.188 7 C -0.352 4.352 8 H 0.104 0.896 9 N -0.361 5.361 10 C 0.043 3.957 11 C -0.089 4.089 12 C 0.006 3.994 13 C -0.126 4.126 14 C -0.004 4.004 15 N -0.328 5.328 16 C 0.385 3.615 17 O -0.476 6.476 18 C -0.279 4.279 19 C -0.139 4.139 20 C -0.178 4.178 21 N -0.008 5.008 22 C -0.070 4.070 23 C -0.169 4.169 24 C -0.120 4.120 25 C -0.149 4.149 26 C -0.027 4.027 27 C -0.002 4.002 28 C -0.144 4.144 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.029 0.971 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.186 0.814 39 H 0.229 0.771 40 H 0.222 0.778 41 H 0.203 0.797 42 H 0.177 0.823 43 H 0.143 0.857 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.077 0.923 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.482 -16.909 19.738 25.995 hybrid contribution -0.102 1.336 -0.941 1.637 sum 0.381 -15.573 18.797 24.413 Atomic orbital electron populations 1.70048 1.06612 1.25481 1.58361 1.25648 0.96465 1.00945 1.03171 0.85066 0.77977 0.79178 0.77167 1.21686 1.22218 1.18808 1.19356 0.90872 0.82894 1.42078 0.89574 1.45969 1.05556 1.00675 1.83917 1.21902 0.87593 0.91031 0.95191 1.21858 0.97250 0.94223 0.95527 1.22524 0.96603 0.83849 0.96455 1.21311 1.00144 0.97867 0.93242 1.21920 0.94467 0.82364 1.01663 1.48020 1.55375 1.21492 1.07935 1.17509 0.76678 0.81826 0.85532 1.90740 1.46008 1.29726 1.81080 1.19256 0.95653 1.21729 0.91280 1.21215 0.97138 1.02001 0.93564 1.22264 0.83667 1.14064 0.97845 1.41735 1.08944 1.44083 1.06032 1.22523 0.94326 1.01636 0.88523 1.21270 0.92820 1.02092 1.00706 1.21490 1.01878 0.97303 0.91296 1.20679 0.91041 1.02675 1.00514 1.18667 0.93104 1.05301 0.85666 1.21581 1.00445 0.98006 0.80197 1.21656 0.98214 0.92859 1.01626 0.94464 0.95823 0.97119 0.94221 0.92802 0.91726 0.92995 0.87663 0.90042 0.81440 0.77117 0.77833 0.79668 0.82308 0.85670 0.89752 0.89987 0.92310 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.00 11.75 21.65 0.25 -58.74 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 3 Si 0.98 45.99 29.56 68.60 2.03 48.02 16 4 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.22 -12.59 10.74 84.03 0.90 -11.69 16 8 H 0.09 4.59 7.83 -2.91 -0.02 4.57 16 9 N -0.64 -32.73 3.54 -738.21 -2.61 -35.34 16 10 C 0.17 8.22 6.39 83.31 0.53 8.75 16 11 C -0.09 -3.21 0.84 -52.51 -0.04 -3.25 16 12 C 0.13 5.18 7.63 83.32 0.64 5.81 16 13 C -0.09 -2.97 5.27 30.56 0.16 -2.81 16 14 C 0.12 3.20 5.96 86.42 0.52 3.71 16 15 N -0.60 -17.57 2.94 -823.62 -2.42 -19.99 16 16 C 0.59 19.30 7.52 86.32 0.65 19.94 16 17 O -0.59 -23.06 16.51 -4.61 -0.08 -23.14 16 18 C -0.27 -7.51 5.06 -19.76 -0.10 -7.61 16 19 C -0.12 -2.45 8.51 22.28 0.19 -2.26 16 20 C -0.05 -0.87 11.53 83.04 0.96 0.09 16 21 N -0.34 -6.41 2.92 -346.30 -1.01 -7.42 16 22 C 0.05 0.57 10.89 83.19 0.91 1.47 16 23 C -0.15 -1.54 9.98 22.03 0.22 -1.32 16 24 C -0.10 -1.53 10.09 22.33 0.23 -1.30 16 25 C -0.13 -3.08 10.06 22.32 0.22 -2.86 16 26 C 0.08 2.11 6.72 39.43 0.27 2.38 16 27 C 0.12 3.41 6.34 86.43 0.55 3.96 16 28 C -0.10 -3.24 5.30 30.57 0.16 -3.08 16 29 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 30 H 0.02 1.29 7.48 -2.39 -0.02 1.28 16 31 H 0.01 0.56 8.09 -2.39 -0.02 0.54 16 32 H 0.04 1.53 8.06 -2.39 -0.02 1.51 16 33 H 0.05 1.96 7.53 -2.39 -0.02 1.94 16 34 H 0.06 2.50 7.95 -2.39 -0.02 2.48 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.11 2.58 4.69 -2.38 -0.01 2.57 16 37 H 0.08 2.02 7.60 -2.38 -0.02 2.00 16 38 H 0.17 2.78 7.91 -2.91 -0.02 2.76 16 39 H 0.21 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.20 0.49 8.06 -2.91 -0.02 0.47 16 41 H 0.19 0.43 8.06 -2.91 -0.02 0.41 16 42 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 43 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 44 H 0.08 2.51 6.99 -2.39 -0.02 2.49 16 45 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.08 2.45 8.10 -2.38 -0.02 2.43 16 Total: -1.00 -80.10 378.11 4.55 -75.55 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.97 Total: 14.66 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 7.42 Total: 6.39 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -5.79 Total: -121.50 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.08 Total: -23.14 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -80.10 4.55 -75.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035747008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.000 kcal (2) G-P(sol) polarization free energy of solvation -80.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds