Wall clock time and date at job start Tue Mar 31 2020 22:50:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86800 * 120.00000 * 2 1
4 4 H 1.48502 * 109.46880 * 359.97438 * 3 2 1
5 5 H 1.48493 * 109.47137 * 240.00175 * 3 2 1
6 6 H 1.48496 * 109.47259 * 119.99945 * 3 2 1
7 7 C 1.38806 * 120.00077 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00237 * 29.18436 * 7 2 1
9 9 N 1.36935 * 120.00062 * 209.18879 * 7 2 1
10 10 C 1.48161 * 126.40579 * 0.40460 * 9 7 2
11 11 C 1.55295 * 107.04464 * 175.03900 * 10 9 7
12 12 C 1.53746 * 101.83964 * 337.52065 * 11 10 9
13 13 H 1.09004 * 111.30600 * 281.04540 * 12 11 10
14 14 C 1.52237 * 114.74517 * 152.76269 * 12 11 10
15 15 N 1.47794 * 106.12125 * 189.87940 * 14 12 11
16 16 C 1.34780 * 119.83142 * 232.15956 * 15 14 12
17 17 O 1.21774 * 120.00006 * 355.13556 * 16 15 14
18 18 C 1.46212 * 119.99732 * 175.13904 * 16 15 14
19 19 C 1.41735 * 126.80024 * 30.17473 * 18 16 15
20 20 C 1.34518 * 107.77360 * 179.97438 * 19 18 16
21 21 N 1.36951 * 109.60523 * 359.97438 * 20 19 18
22 22 C 1.36701 * 131.34761 * 180.02562 * 21 20 19
23 23 C 1.35008 * 120.75463 * 180.02562 * 22 21 20
24 24 C 1.40304 * 120.37939 * 359.97397 * 23 22 21
25 25 C 1.36348 * 119.45527 * 0.02562 * 24 23 22
26 26 C 1.36939 * 108.74116 * 359.76756 * 21 20 19
27 27 C 1.46591 * 120.48485 * 52.46356 * 15 14 12
28 28 C 1.53955 * 110.57894 * 311.85040 * 27 15 14
29 29 C 1.45467 * 126.40660 * 180.09066 * 9 7 2
30 30 H 1.08998 * 109.26712 * 93.83745 * 29 9 7
31 31 H 0.96997 * 120.00375 * 174.98800 * 1 2 3
32 32 H 1.09003 * 109.91619 * 294.38709 * 10 9 7
33 33 H 1.09001 * 109.91728 * 55.48989 * 10 9 7
34 34 H 1.09002 * 110.95130 * 95.65488 * 11 10 9
35 35 H 1.08993 * 110.95183 * 219.38367 * 11 10 9
36 36 H 1.09005 * 110.06716 * 309.63107 * 14 12 11
37 37 H 1.08996 * 110.07012 * 71.20407 * 14 12 11
38 38 H 1.07996 * 126.11015 * 359.94347 * 19 18 16
39 39 H 1.08007 * 125.19671 * 180.02562 * 20 19 18
40 40 H 1.08002 * 119.62596 * 0.02562 * 22 21 20
41 41 H 1.08005 * 119.81156 * 180.02562 * 23 22 21
42 42 H 1.07997 * 120.27055 * 180.02562 * 24 23 22
43 43 H 1.08003 * 120.33436 * 179.97438 * 25 24 23
44 44 H 1.08999 * 109.25847 * 191.56747 * 27 15 14
45 45 H 1.08999 * 109.22431 * 72.11130 * 27 15 14
46 46 H 1.09004 * 109.87765 * 291.59124 * 28 27 15
47 47 H 1.08996 * 109.88982 * 170.51557 * 28 27 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 1.2851 2.7464 -0.0006
5 1 3.1039 1.6964 -1.2125
6 1 3.1039 1.6964 1.2125
7 6 2.0102 -1.2021 0.0005
8 1 1.5731 -2.0783 -0.4552
9 7 3.2492 -1.2771 0.5789
10 6 3.9756 -0.1727 1.2479
11 6 5.2727 -0.7793 1.8491
12 6 4.8993 -2.2658 1.9695
13 1 4.2771 -2.4483 2.8457
14 6 6.0783 -3.2265 1.9019
15 7 5.4980 -4.5812 1.7909
16 6 5.8880 -5.5496 2.6435
17 8 6.7794 -5.3330 3.4444
18 6 5.2407 -6.8601 2.6067
19 6 4.6717 -7.4945 1.4742
20 6 4.1839 -8.6835 1.8714
21 7 4.4116 -8.8490 3.2116
22 6 4.1063 -9.8771 4.0593
23 6 4.4367 -9.8151 5.3669
24 6 5.1016 -8.6904 5.8781
25 6 5.4120 -7.6580 5.0433
26 6 5.0655 -7.7436 3.6867
27 6 4.5052 -4.8824 0.7553
28 6 3.4059 -3.8049 0.7298
29 6 4.0955 -2.4577 0.6570
30 1 4.7861 -2.4615 -0.1863
31 1 -0.4850 -0.8368 -0.0734
32 1 4.2288 0.5992 0.5211
33 1 3.3586 0.2515 2.0401
34 1 6.1166 -0.6428 1.1728
35 1 5.4861 -0.3504 2.8281
36 1 6.6956 -3.0005 1.0324
37 1 6.6724 -3.1541 2.8128
38 1 4.6358 -7.0945 0.4716
39 1 3.6890 -9.3987 1.2310
40 1 3.5950 -10.7490 3.6787
41 1 4.1885 -10.6363 6.0230
42 1 5.3655 -8.6428 6.9243
43 1 5.9233 -6.7852 5.4219
44 1 4.0530 -5.8524 0.9620
45 1 4.9986 -4.9156 -0.2161
46 1 2.8061 -3.8658 1.6379
47 1 2.7707 -3.9439 -0.1449
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001036768819.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:50:04
Heat of formation + Delta-G solvation = 107.393744 kcal
Electronic energy + Delta-G solvation = -29701.113357 eV
Core-core repulsion = 25852.002528 eV
Total energy + Delta-G solvation = -3849.110829 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.55701 -40.07311 -38.24960 -36.87688 -35.42353 -33.36572 -32.71208 -31.55142
-30.69503 -30.00253 -28.54734 -27.86316 -25.16401 -24.09118 -23.60344 -22.79961
-22.30317 -21.44652 -20.48091 -19.77090 -19.04231 -17.80845 -17.11318 -16.67089
-16.37888 -15.99530 -15.67498 -15.43617 -15.03764 -15.02546 -14.72364 -14.59987
-13.94698 -13.82864 -13.55150 -13.21383 -13.01654 -12.82395 -12.65878 -12.50089
-12.12876 -11.92013 -11.90060 -11.76753 -11.57650 -11.25364 -11.09837 -10.76831
-10.67437 -10.51922 -10.37506 -10.00381 -9.78405 -9.56666 -9.54709 -8.88074
-8.84563 -8.46209 -8.30203 -7.57498 -7.05164 -6.31072 -3.08961 0.48393
0.98558 2.20087 2.36324 3.03115 3.18910 3.46761 3.56414 3.58040
3.73990 4.17537 4.48871 4.51655 4.62479 4.67439 4.74311 4.84358
4.94480 5.05211 5.11755 5.20214 5.28061 5.39301 5.41698 5.46145
5.49184 5.54423 5.58293 5.71768 5.76497 5.86562 5.91896 5.96096
6.01857 6.05414 6.12327 6.16323 6.21753 6.34611 6.38551 6.46717
6.57919 6.60396 6.62952 6.82335 6.89848 6.95416 7.01352 7.62302
7.74749 8.36854 8.40597 9.07578 9.68033 10.34258 11.20104
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.019234 B = 0.002880 C = 0.002721
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1455.381070 B = 9719.646271 C =10286.826592
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.918 5.918
2 C -0.020 4.020
3 Si 1.042 2.958
4 H -0.300 1.300
5 H -0.298 1.298
6 H -0.269 1.269
7 C -0.329 4.329
8 H 0.079 0.921
9 N -0.602 5.602
10 C 0.120 3.880
11 C -0.121 4.121
12 C -0.125 4.125
13 H 0.083 0.917
14 C 0.130 3.870
15 N -0.600 5.600
16 C 0.591 3.409
17 O -0.558 6.558
18 C -0.231 4.231
19 C -0.116 4.116
20 C -0.063 4.063
21 N -0.339 5.339
22 C 0.047 3.953
23 C -0.143 4.143
24 C -0.120 4.120
25 C -0.079 4.079
26 C 0.107 3.893
27 C 0.085 3.915
28 C -0.125 4.125
29 C 0.169 3.831
30 H 0.021 0.979
31 H 0.261 0.739
32 H 0.028 0.972
33 H 0.048 0.952
34 H 0.067 0.933
35 H 0.068 0.932
36 H 0.069 0.931
37 H 0.090 0.910
38 H 0.167 0.833
39 H 0.174 0.826
40 H 0.163 0.837
41 H 0.147 0.853
42 H 0.137 0.863
43 H 0.151 0.849
44 H 0.108 0.892
45 H 0.063 0.937
46 H 0.066 0.934
47 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.952 -20.876 7.711 24.803
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.559 5.559
2 C -0.220 4.220
3 Si 0.874 3.126
4 H -0.228 1.228
5 H -0.226 1.226
6 H -0.195 1.195
7 C -0.456 4.456
8 H 0.097 0.903
9 N -0.328 5.328
10 C -0.004 4.004
11 C -0.160 4.160
12 C -0.145 4.145
13 H 0.101 0.899
14 C 0.008 3.992
15 N -0.332 5.332
16 C 0.382 3.618
17 O -0.439 6.439
18 C -0.240 4.240
19 C -0.137 4.137
20 C -0.188 4.188
21 N -0.003 5.003
22 C -0.074 4.074
23 C -0.163 4.163
24 C -0.141 4.141
25 C -0.098 4.098
26 C -0.002 4.002
27 C -0.038 4.038
28 C -0.164 4.164
29 C 0.061 3.939
30 H 0.038 0.962
31 H 0.071 0.929
32 H 0.046 0.954
33 H 0.066 0.934
34 H 0.085 0.915
35 H 0.087 0.913
36 H 0.087 0.913
37 H 0.108 0.892
38 H 0.184 0.816
39 H 0.191 0.809
40 H 0.181 0.819
41 H 0.165 0.835
42 H 0.155 0.845
43 H 0.169 0.831
44 H 0.126 0.874
45 H 0.081 0.919
46 H 0.085 0.915
47 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 10.993 -19.314 8.115 23.659
hybrid contribution -0.033 -1.697 -0.420 1.749
sum 10.960 -21.012 7.694 24.916
Atomic orbital electron populations
1.70958 1.05917 1.29874 1.49128 1.25646 0.96085 1.00903 0.99393
0.84380 0.74623 0.76326 0.77253 1.22804 1.22605 1.19501 1.19943
0.90738 0.98066 1.36835 0.90347 1.44541 1.17994 1.04361 1.65924
1.22383 0.91442 0.91252 0.95337 1.22448 0.98075 0.94815 1.00647
1.22619 0.97160 0.94249 1.00499 0.89897 1.21549 0.95197 0.79742
1.02699 1.48036 1.41815 1.10494 1.32834 1.17086 0.81749 0.82971
0.80030 1.90758 1.31088 1.82210 1.39796 1.19333 1.14125 0.97196
0.93342 1.21363 0.99370 0.93763 0.99213 1.21752 1.13291 1.01870
0.81894 1.41514 1.36992 1.13199 1.08563 1.21686 1.02712 0.92244
0.90743 1.20777 1.01462 1.00181 0.93911 1.21105 0.99110 0.93287
1.00593 1.20796 0.98913 1.00285 0.89774 1.18564 0.99995 0.87583
0.94054 1.22589 0.89945 1.00979 0.90309 1.21829 0.97066 0.94642
1.02902 1.20541 0.91664 0.88069 0.93637 0.96215 0.92875 0.95399
0.93435 0.91468 0.91317 0.91272 0.89177 0.81632 0.80861 0.81938
0.83518 0.84481 0.83145 0.87442 0.91902 0.91478 0.90691
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -28.78 13.70 55.49 0.76 -28.02 16
2 C -0.02 -0.58 5.45 -17.43 -0.10 -0.67 16
3 Si 1.04 26.22 25.30 -169.99 -4.30 21.92 16
4 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16
5 H -0.30 -7.35 7.11 56.52 0.40 -6.94 16
6 H -0.27 -6.09 4.62 56.52 0.26 -5.83 16
7 C -0.33 -9.27 10.04 -15.06 -0.15 -9.42 16
8 H 0.08 2.30 7.44 -52.48 -0.39 1.91 16
9 N -0.60 -14.64 3.31 -163.26 -0.54 -15.18 16
10 C 0.12 2.64 4.53 -1.91 -0.01 2.63 16
11 C -0.12 -2.07 6.54 -25.13 -0.16 -2.24 16
12 C -0.12 -2.17 2.84 -89.51 -0.25 -2.43 16
13 H 0.08 1.57 8.12 -51.93 -0.42 1.15 16
14 C 0.13 2.00 5.96 -3.72 -0.02 1.98 16
15 N -0.60 -9.21 2.99 -174.14 -0.52 -9.73 16
16 C 0.59 9.59 7.57 -13.06 -0.10 9.49 16
17 O -0.56 -10.36 15.75 5.12 0.08 -10.28 16
18 C -0.23 -3.24 5.74 -104.46 -0.60 -3.84 16
19 C -0.12 -1.29 8.40 -39.56 -0.33 -1.62 16
20 C -0.06 -0.59 11.53 -16.58 -0.19 -0.79 16
21 N -0.34 -3.53 2.92 -60.81 -0.18 -3.71 16
22 C 0.05 0.35 10.89 -16.53 -0.18 0.17 16
23 C -0.14 -0.97 9.98 -39.95 -0.40 -1.37 16
24 C -0.12 -1.01 10.09 -39.49 -0.40 -1.41 16
25 C -0.08 -0.92 9.84 -39.49 -0.39 -1.31 16
26 C 0.11 1.39 6.69 -83.92 -0.56 0.83 16
27 C 0.08 1.18 5.27 -3.49 -0.02 1.16 16
28 C -0.13 -2.20 5.48 -26.98 -0.15 -2.35 16
29 C 0.17 3.35 2.57 -68.13 -0.18 3.17 16
30 H 0.02 0.41 7.91 -51.93 -0.41 0.00 16
31 H 0.26 8.08 8.73 -40.82 -0.36 7.73 16
32 H 0.03 0.63 4.98 -51.93 -0.26 0.37 16
33 H 0.05 1.11 6.57 -51.93 -0.34 0.77 16
34 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16
35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
36 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16
37 H 0.09 1.41 7.02 -51.93 -0.36 1.04 16
38 H 0.17 1.52 5.96 -52.49 -0.31 1.21 16
39 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16
40 H 0.16 0.63 8.06 -52.49 -0.42 0.20 16
41 H 0.15 0.52 8.06 -52.48 -0.42 0.10 16
42 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16
43 H 0.15 1.83 7.59 -52.48 -0.40 1.44 16
44 H 0.11 1.32 3.33 -51.93 -0.17 1.15 16
45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
46 H 0.07 1.29 8.11 -51.93 -0.42 0.86 16
47 H 0.07 1.36 7.62 -51.93 -0.40 0.97 16
LS Contribution 360.32 15.07 5.43 5.43
Total: -1.00 -35.69 360.32 -10.01 -45.70
By element:
Atomic # 1 Polarization: 8.44 SS G_CDS: -6.56 Total: 1.88 kcal
Atomic # 6 Polarization: -3.83 SS G_CDS: -4.19 Total: -8.02 kcal
Atomic # 7 Polarization: -56.16 SS G_CDS: -0.48 Total: -56.63 kcal
Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal
Atomic # 14 Polarization: 26.22 SS G_CDS: -4.30 Total: 21.92 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -35.69 -10.01 -45.70 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036768819.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 153.096 kcal
(2) G-P(sol) polarization free energy of solvation -35.689 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.407 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.702 kcal
(6) G-S(sol) free energy of system = (1) + (5) 107.394 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds