Wall clock time and date at job start Tue Mar 31 2020 22:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00000 * 2 1 4 4 H 1.48502 * 109.46880 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47137 * 240.00175 * 3 2 1 6 6 H 1.48496 * 109.47259 * 119.99945 * 3 2 1 7 7 C 1.38806 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00237 * 29.18436 * 7 2 1 9 9 N 1.36935 * 120.00062 * 209.18879 * 7 2 1 10 10 C 1.48161 * 126.40579 * 0.40460 * 9 7 2 11 11 C 1.55295 * 107.04464 * 175.03900 * 10 9 7 12 12 C 1.53746 * 101.83964 * 337.52065 * 11 10 9 13 13 H 1.09004 * 111.30600 * 281.04540 * 12 11 10 14 14 C 1.52237 * 114.74517 * 152.76269 * 12 11 10 15 15 N 1.47794 * 106.12125 * 189.87940 * 14 12 11 16 16 C 1.34780 * 119.83142 * 232.15956 * 15 14 12 17 17 O 1.21774 * 120.00006 * 355.13556 * 16 15 14 18 18 C 1.46212 * 119.99732 * 175.13904 * 16 15 14 19 19 C 1.41735 * 126.80024 * 30.17473 * 18 16 15 20 20 C 1.34518 * 107.77360 * 179.97438 * 19 18 16 21 21 N 1.36951 * 109.60523 * 359.97438 * 20 19 18 22 22 C 1.36701 * 131.34761 * 180.02562 * 21 20 19 23 23 C 1.35008 * 120.75463 * 180.02562 * 22 21 20 24 24 C 1.40304 * 120.37939 * 359.97397 * 23 22 21 25 25 C 1.36348 * 119.45527 * 0.02562 * 24 23 22 26 26 C 1.36939 * 108.74116 * 359.76756 * 21 20 19 27 27 C 1.46591 * 120.48485 * 52.46356 * 15 14 12 28 28 C 1.53955 * 110.57894 * 311.85040 * 27 15 14 29 29 C 1.45467 * 126.40660 * 180.09066 * 9 7 2 30 30 H 1.08998 * 109.26712 * 93.83745 * 29 9 7 31 31 H 0.96997 * 120.00375 * 174.98800 * 1 2 3 32 32 H 1.09003 * 109.91619 * 294.38709 * 10 9 7 33 33 H 1.09001 * 109.91728 * 55.48989 * 10 9 7 34 34 H 1.09002 * 110.95130 * 95.65488 * 11 10 9 35 35 H 1.08993 * 110.95183 * 219.38367 * 11 10 9 36 36 H 1.09005 * 110.06716 * 309.63107 * 14 12 11 37 37 H 1.08996 * 110.07012 * 71.20407 * 14 12 11 38 38 H 1.07996 * 126.11015 * 359.94347 * 19 18 16 39 39 H 1.08007 * 125.19671 * 180.02562 * 20 19 18 40 40 H 1.08002 * 119.62596 * 0.02562 * 22 21 20 41 41 H 1.08005 * 119.81156 * 180.02562 * 23 22 21 42 42 H 1.07997 * 120.27055 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.33436 * 179.97438 * 25 24 23 44 44 H 1.08999 * 109.25847 * 191.56747 * 27 15 14 45 45 H 1.08999 * 109.22431 * 72.11130 * 27 15 14 46 46 H 1.09004 * 109.87765 * 291.59124 * 28 27 15 47 47 H 1.08996 * 109.88982 * 170.51557 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 1.5731 -2.0783 -0.4552 9 7 3.2492 -1.2771 0.5789 10 6 3.9756 -0.1727 1.2479 11 6 5.2727 -0.7793 1.8491 12 6 4.8993 -2.2658 1.9695 13 1 4.2771 -2.4483 2.8457 14 6 6.0783 -3.2265 1.9019 15 7 5.4980 -4.5812 1.7909 16 6 5.8880 -5.5496 2.6435 17 8 6.7794 -5.3330 3.4444 18 6 5.2407 -6.8601 2.6067 19 6 4.6717 -7.4945 1.4742 20 6 4.1839 -8.6835 1.8714 21 7 4.4116 -8.8490 3.2116 22 6 4.1063 -9.8771 4.0593 23 6 4.4367 -9.8151 5.3669 24 6 5.1016 -8.6904 5.8781 25 6 5.4120 -7.6580 5.0433 26 6 5.0655 -7.7436 3.6867 27 6 4.5052 -4.8824 0.7553 28 6 3.4059 -3.8049 0.7298 29 6 4.0955 -2.4577 0.6570 30 1 4.7861 -2.4615 -0.1863 31 1 -0.4850 -0.8368 -0.0734 32 1 4.2288 0.5992 0.5211 33 1 3.3586 0.2515 2.0401 34 1 6.1166 -0.6428 1.1728 35 1 5.4861 -0.3504 2.8281 36 1 6.6956 -3.0005 1.0324 37 1 6.6724 -3.1541 2.8128 38 1 4.6358 -7.0945 0.4716 39 1 3.6890 -9.3987 1.2310 40 1 3.5950 -10.7490 3.6787 41 1 4.1885 -10.6363 6.0230 42 1 5.3655 -8.6428 6.9243 43 1 5.9233 -6.7852 5.4219 44 1 4.0530 -5.8524 0.9620 45 1 4.9986 -4.9156 -0.2161 46 1 2.8061 -3.8658 1.6379 47 1 2.7707 -3.9439 -0.1449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036768819.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:04 Heat of formation + Delta-G solvation = 107.393744 kcal Electronic energy + Delta-G solvation = -29701.113357 eV Core-core repulsion = 25852.002528 eV Total energy + Delta-G solvation = -3849.110829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.55701 -40.07311 -38.24960 -36.87688 -35.42353 -33.36572 -32.71208 -31.55142 -30.69503 -30.00253 -28.54734 -27.86316 -25.16401 -24.09118 -23.60344 -22.79961 -22.30317 -21.44652 -20.48091 -19.77090 -19.04231 -17.80845 -17.11318 -16.67089 -16.37888 -15.99530 -15.67498 -15.43617 -15.03764 -15.02546 -14.72364 -14.59987 -13.94698 -13.82864 -13.55150 -13.21383 -13.01654 -12.82395 -12.65878 -12.50089 -12.12876 -11.92013 -11.90060 -11.76753 -11.57650 -11.25364 -11.09837 -10.76831 -10.67437 -10.51922 -10.37506 -10.00381 -9.78405 -9.56666 -9.54709 -8.88074 -8.84563 -8.46209 -8.30203 -7.57498 -7.05164 -6.31072 -3.08961 0.48393 0.98558 2.20087 2.36324 3.03115 3.18910 3.46761 3.56414 3.58040 3.73990 4.17537 4.48871 4.51655 4.62479 4.67439 4.74311 4.84358 4.94480 5.05211 5.11755 5.20214 5.28061 5.39301 5.41698 5.46145 5.49184 5.54423 5.58293 5.71768 5.76497 5.86562 5.91896 5.96096 6.01857 6.05414 6.12327 6.16323 6.21753 6.34611 6.38551 6.46717 6.57919 6.60396 6.62952 6.82335 6.89848 6.95416 7.01352 7.62302 7.74749 8.36854 8.40597 9.07578 9.68033 10.34258 11.20104 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019234 B = 0.002880 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.381070 B = 9719.646271 C =10286.826592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.020 4.020 3 Si 1.042 2.958 4 H -0.300 1.300 5 H -0.298 1.298 6 H -0.269 1.269 7 C -0.329 4.329 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.120 3.880 11 C -0.121 4.121 12 C -0.125 4.125 13 H 0.083 0.917 14 C 0.130 3.870 15 N -0.600 5.600 16 C 0.591 3.409 17 O -0.558 6.558 18 C -0.231 4.231 19 C -0.116 4.116 20 C -0.063 4.063 21 N -0.339 5.339 22 C 0.047 3.953 23 C -0.143 4.143 24 C -0.120 4.120 25 C -0.079 4.079 26 C 0.107 3.893 27 C 0.085 3.915 28 C -0.125 4.125 29 C 0.169 3.831 30 H 0.021 0.979 31 H 0.261 0.739 32 H 0.028 0.972 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.167 0.833 39 H 0.174 0.826 40 H 0.163 0.837 41 H 0.147 0.853 42 H 0.137 0.863 43 H 0.151 0.849 44 H 0.108 0.892 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.952 -20.876 7.711 24.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.874 3.126 4 H -0.228 1.228 5 H -0.226 1.226 6 H -0.195 1.195 7 C -0.456 4.456 8 H 0.097 0.903 9 N -0.328 5.328 10 C -0.004 4.004 11 C -0.160 4.160 12 C -0.145 4.145 13 H 0.101 0.899 14 C 0.008 3.992 15 N -0.332 5.332 16 C 0.382 3.618 17 O -0.439 6.439 18 C -0.240 4.240 19 C -0.137 4.137 20 C -0.188 4.188 21 N -0.003 5.003 22 C -0.074 4.074 23 C -0.163 4.163 24 C -0.141 4.141 25 C -0.098 4.098 26 C -0.002 4.002 27 C -0.038 4.038 28 C -0.164 4.164 29 C 0.061 3.939 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.184 0.816 39 H 0.191 0.809 40 H 0.181 0.819 41 H 0.165 0.835 42 H 0.155 0.845 43 H 0.169 0.831 44 H 0.126 0.874 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.993 -19.314 8.115 23.659 hybrid contribution -0.033 -1.697 -0.420 1.749 sum 10.960 -21.012 7.694 24.916 Atomic orbital electron populations 1.70958 1.05917 1.29874 1.49128 1.25646 0.96085 1.00903 0.99393 0.84380 0.74623 0.76326 0.77253 1.22804 1.22605 1.19501 1.19943 0.90738 0.98066 1.36835 0.90347 1.44541 1.17994 1.04361 1.65924 1.22383 0.91442 0.91252 0.95337 1.22448 0.98075 0.94815 1.00647 1.22619 0.97160 0.94249 1.00499 0.89897 1.21549 0.95197 0.79742 1.02699 1.48036 1.41815 1.10494 1.32834 1.17086 0.81749 0.82971 0.80030 1.90758 1.31088 1.82210 1.39796 1.19333 1.14125 0.97196 0.93342 1.21363 0.99370 0.93763 0.99213 1.21752 1.13291 1.01870 0.81894 1.41514 1.36992 1.13199 1.08563 1.21686 1.02712 0.92244 0.90743 1.20777 1.01462 1.00181 0.93911 1.21105 0.99110 0.93287 1.00593 1.20796 0.98913 1.00285 0.89774 1.18564 0.99995 0.87583 0.94054 1.22589 0.89945 1.00979 0.90309 1.21829 0.97066 0.94642 1.02902 1.20541 0.91664 0.88069 0.93637 0.96215 0.92875 0.95399 0.93435 0.91468 0.91317 0.91272 0.89177 0.81632 0.80861 0.81938 0.83518 0.84481 0.83145 0.87442 0.91902 0.91478 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.78 13.70 55.49 0.76 -28.02 16 2 C -0.02 -0.58 5.45 -17.43 -0.10 -0.67 16 3 Si 1.04 26.22 25.30 -169.99 -4.30 21.92 16 4 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 5 H -0.30 -7.35 7.11 56.52 0.40 -6.94 16 6 H -0.27 -6.09 4.62 56.52 0.26 -5.83 16 7 C -0.33 -9.27 10.04 -15.06 -0.15 -9.42 16 8 H 0.08 2.30 7.44 -52.48 -0.39 1.91 16 9 N -0.60 -14.64 3.31 -163.26 -0.54 -15.18 16 10 C 0.12 2.64 4.53 -1.91 -0.01 2.63 16 11 C -0.12 -2.07 6.54 -25.13 -0.16 -2.24 16 12 C -0.12 -2.17 2.84 -89.51 -0.25 -2.43 16 13 H 0.08 1.57 8.12 -51.93 -0.42 1.15 16 14 C 0.13 2.00 5.96 -3.72 -0.02 1.98 16 15 N -0.60 -9.21 2.99 -174.14 -0.52 -9.73 16 16 C 0.59 9.59 7.57 -13.06 -0.10 9.49 16 17 O -0.56 -10.36 15.75 5.12 0.08 -10.28 16 18 C -0.23 -3.24 5.74 -104.46 -0.60 -3.84 16 19 C -0.12 -1.29 8.40 -39.56 -0.33 -1.62 16 20 C -0.06 -0.59 11.53 -16.58 -0.19 -0.79 16 21 N -0.34 -3.53 2.92 -60.81 -0.18 -3.71 16 22 C 0.05 0.35 10.89 -16.53 -0.18 0.17 16 23 C -0.14 -0.97 9.98 -39.95 -0.40 -1.37 16 24 C -0.12 -1.01 10.09 -39.49 -0.40 -1.41 16 25 C -0.08 -0.92 9.84 -39.49 -0.39 -1.31 16 26 C 0.11 1.39 6.69 -83.92 -0.56 0.83 16 27 C 0.08 1.18 5.27 -3.49 -0.02 1.16 16 28 C -0.13 -2.20 5.48 -26.98 -0.15 -2.35 16 29 C 0.17 3.35 2.57 -68.13 -0.18 3.17 16 30 H 0.02 0.41 7.91 -51.93 -0.41 0.00 16 31 H 0.26 8.08 8.73 -40.82 -0.36 7.73 16 32 H 0.03 0.63 4.98 -51.93 -0.26 0.37 16 33 H 0.05 1.11 6.57 -51.93 -0.34 0.77 16 34 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 37 H 0.09 1.41 7.02 -51.93 -0.36 1.04 16 38 H 0.17 1.52 5.96 -52.49 -0.31 1.21 16 39 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16 40 H 0.16 0.63 8.06 -52.49 -0.42 0.20 16 41 H 0.15 0.52 8.06 -52.48 -0.42 0.10 16 42 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.15 1.83 7.59 -52.48 -0.40 1.44 16 44 H 0.11 1.32 3.33 -51.93 -0.17 1.15 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.07 1.29 8.11 -51.93 -0.42 0.86 16 47 H 0.07 1.36 7.62 -51.93 -0.40 0.97 16 LS Contribution 360.32 15.07 5.43 5.43 Total: -1.00 -35.69 360.32 -10.01 -45.70 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.56 Total: 1.88 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -4.19 Total: -8.02 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.48 Total: -56.63 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 26.22 SS G_CDS: -4.30 Total: 21.92 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.69 -10.01 -45.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036768819.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.096 kcal (2) G-P(sol) polarization free energy of solvation -35.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds