Wall clock time and date at job start Tue Mar 31 2020 22:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99897 * 2 1 4 4 H 1.48499 * 109.47481 * 275.00130 * 3 2 1 5 5 H 1.48500 * 109.46860 * 34.99816 * 3 2 1 6 6 H 1.48495 * 109.47023 * 154.99890 * 3 2 1 7 7 C 1.38812 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99826 * 173.78712 * 7 2 1 9 9 N 1.36939 * 120.00282 * 353.77732 * 7 2 1 10 10 C 1.48158 * 126.40175 * 4.51066 * 9 7 2 11 11 C 1.55290 * 107.04151 * 184.93881 * 10 9 7 12 12 C 1.53740 * 101.84325 * 22.48202 * 11 10 9 13 13 H 1.09000 * 111.30448 * 78.94655 * 12 11 10 14 14 C 1.52662 * 114.68524 * 207.36186 * 12 11 10 15 15 N 1.47716 * 106.13938 * 169.72411 * 14 12 11 16 16 C 1.34782 * 119.68652 * 127.91664 * 15 14 12 17 17 O 1.21774 * 119.99944 * 3.95712 * 16 15 14 18 18 C 1.46206 * 119.99803 * 183.96386 * 16 15 14 19 19 C 1.41737 * 126.80040 * 310.93218 * 18 16 15 20 20 C 1.34522 * 107.77714 * 180.02562 * 19 18 16 21 21 N 1.36950 * 109.60395 * 0.02562 * 20 19 18 22 22 C 1.36704 * 131.35280 * 180.02562 * 21 20 19 23 23 C 1.35007 * 120.75648 * 180.02562 * 22 21 20 24 24 C 1.40302 * 120.37996 * 359.97438 * 23 22 21 25 25 C 1.36337 * 119.45842 * 0.02562 * 24 23 22 26 26 C 1.36950 * 108.74102 * 359.97438 * 21 20 19 27 27 C 1.46598 * 120.63000 * 307.63425 * 15 14 12 28 28 C 1.53953 * 110.58188 * 48.07341 * 27 15 14 29 29 C 1.45469 * 126.40748 * 184.53100 * 9 7 2 30 30 H 1.08999 * 108.78162 * 265.97725 * 29 9 7 31 31 H 0.97001 * 120.00077 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.92402 * 65.59005 * 10 9 7 33 33 H 1.09005 * 110.08597 * 304.37681 * 10 9 7 34 34 H 1.08998 * 110.95490 * 264.34401 * 11 10 9 35 35 H 1.08997 * 110.95363 * 140.61712 * 11 10 9 36 36 H 1.09003 * 110.22046 * 50.56142 * 14 12 11 37 37 H 1.08997 * 110.13707 * 288.84213 * 14 12 11 38 38 H 1.07997 * 126.10913 * 0.05593 * 19 18 16 39 39 H 1.07995 * 125.19925 * 179.97438 * 20 19 18 40 40 H 1.07995 * 119.62033 * 0.02562 * 22 21 20 41 41 H 1.08001 * 119.80589 * 180.27757 * 23 22 21 42 42 H 1.08000 * 120.27180 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.34219 * 180.02562 * 25 24 23 44 44 H 1.08999 * 109.25787 * 168.36518 * 27 15 14 45 45 H 1.09000 * 109.25100 * 287.83266 * 27 15 14 46 46 H 1.08996 * 109.87967 * 68.41370 * 28 27 15 47 47 H 1.09001 * 109.87857 * 189.48904 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3920 2.1075 -1.3947 5 1 1.5044 2.6198 0.8030 6 1 3.5965 1.4120 0.5917 7 6 2.0103 -1.2022 -0.0005 8 1 3.0855 -1.2048 -0.1018 9 7 1.3317 -2.3847 0.1275 10 6 -0.1394 -2.5529 0.1811 11 6 -0.4158 -4.0558 0.4571 12 6 0.9049 -4.5063 1.1024 13 1 0.9550 -4.2101 2.1503 14 6 1.2373 -5.9837 0.9098 15 7 2.6305 -6.1546 1.3701 16 6 2.9228 -7.1124 2.2722 17 8 2.0547 -7.8784 2.6498 18 6 4.2820 -7.2315 2.7976 19 6 5.4830 -7.2644 2.0457 20 6 6.5062 -7.3826 2.9110 21 7 6.0222 -7.4284 4.1913 22 6 6.6608 -7.5416 5.3947 23 6 5.9601 -7.5664 6.5484 24 6 4.5601 -7.4755 6.5305 25 6 3.9108 -7.3622 5.3370 26 6 4.6564 -7.3370 4.1489 27 6 3.6994 -5.2964 0.8504 28 6 3.2780 -3.8165 0.9008 29 6 1.9203 -3.7105 0.2366 30 1 1.9700 -4.1553 -0.7573 31 1 -0.4850 0.8400 0.0004 32 1 -0.5814 -2.2629 -0.7721 33 1 -0.5566 -1.9450 0.9840 34 1 -0.5997 -4.5954 -0.4719 35 1 -1.2492 -4.1783 1.1488 36 1 1.1554 -6.2542 -0.1430 37 1 0.5672 -6.6003 1.5088 38 1 5.5625 -7.2047 0.9703 39 1 7.5497 -7.4343 2.6377 40 1 7.7381 -7.6120 5.4228 41 1 6.4806 -7.6518 7.4909 42 1 4.0013 -7.4960 7.4544 43 1 2.8336 -7.2909 5.3066 44 1 4.5970 -5.4353 1.4530 45 1 3.9130 -5.5737 -0.1819 46 1 3.2105 -3.4855 1.9371 47 1 4.0029 -3.2061 0.3623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036768821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:09 Heat of formation + Delta-G solvation = 82.674783 kcal Electronic energy + Delta-G solvation = -29675.690139 eV Core-core repulsion = 25825.507415 eV Total energy + Delta-G solvation = -3850.182724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.47797 -39.90708 -38.03808 -36.78110 -35.19476 -33.28181 -32.56166 -31.44556 -30.38113 -29.59386 -28.42774 -27.64994 -24.95916 -24.09476 -23.81698 -22.43119 -22.16250 -21.47879 -20.03846 -19.66986 -18.91559 -17.74264 -16.74179 -16.55243 -16.14109 -16.00469 -15.53430 -15.33762 -14.98481 -14.81949 -14.49644 -14.28810 -13.83583 -13.82513 -13.38734 -13.09775 -12.93727 -12.60153 -12.45732 -12.32980 -12.00701 -11.87760 -11.65081 -11.54445 -11.37451 -11.32295 -10.83013 -10.72370 -10.66486 -10.52372 -10.11847 -10.02665 -9.84829 -9.60676 -9.59611 -9.39214 -8.82139 -8.56705 -8.35875 -7.51885 -6.79921 -5.69916 -3.01445 0.54531 1.05683 2.32811 2.41596 3.01808 3.23470 3.40580 3.46041 3.48054 3.53202 4.21420 4.51553 4.53099 4.56106 4.67230 4.82689 4.96804 5.09021 5.19377 5.25700 5.34471 5.44049 5.46498 5.51567 5.60264 5.63259 5.67422 5.74811 5.89876 5.90931 5.97897 6.02592 6.10381 6.12954 6.23762 6.28451 6.32317 6.42629 6.49208 6.60667 6.65272 6.68537 6.73152 6.94652 7.01254 7.14277 7.57422 7.66051 7.68917 7.84099 8.27513 8.44660 9.22127 9.86071 10.55133 11.42995 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014360 B = 0.003057 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.423549 B = 9158.568094 C = 9958.176015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.596 5.596 10 C 0.176 3.824 11 C -0.136 4.136 12 C -0.123 4.123 13 H 0.079 0.921 14 C 0.128 3.872 15 N -0.599 5.599 16 C 0.591 3.409 17 O -0.554 6.554 18 C -0.224 4.224 19 C -0.108 4.108 20 C -0.062 4.062 21 N -0.340 5.340 22 C 0.048 3.952 23 C -0.144 4.144 24 C -0.120 4.120 25 C -0.080 4.080 26 C 0.099 3.901 27 C 0.106 3.894 28 C -0.128 4.128 29 C 0.167 3.833 30 H 0.019 0.981 31 H 0.252 0.748 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.155 0.845 39 H 0.173 0.827 40 H 0.163 0.837 41 H 0.147 0.853 42 H 0.137 0.863 43 H 0.147 0.853 44 H 0.090 0.910 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.188 -16.684 9.539 23.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.052 3.948 11 C -0.175 4.175 12 C -0.143 4.143 13 H 0.097 0.903 14 C 0.006 3.994 15 N -0.331 5.331 16 C 0.380 3.620 17 O -0.433 6.433 18 C -0.234 4.234 19 C -0.130 4.130 20 C -0.188 4.188 21 N -0.004 5.004 22 C -0.073 4.073 23 C -0.164 4.164 24 C -0.141 4.141 25 C -0.099 4.099 26 C -0.009 4.009 27 C -0.017 4.017 28 C -0.167 4.167 29 C 0.059 3.941 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.172 0.828 39 H 0.190 0.810 40 H 0.180 0.820 41 H 0.164 0.836 42 H 0.155 0.845 43 H 0.164 0.836 44 H 0.108 0.892 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.903 -16.832 9.803 23.365 hybrid contribution 0.618 1.084 -0.072 1.250 sum 13.521 -15.748 9.731 22.924 Atomic orbital electron populations 1.69955 1.04902 1.24956 1.56936 1.24804 0.95643 0.97574 1.02399 0.86175 0.78715 0.83925 0.77438 1.21745 1.21718 1.20690 1.18988 0.90896 0.82481 1.42864 0.90422 1.44216 1.01654 1.00514 1.85639 1.21528 0.84024 0.88750 1.00489 1.22710 0.95722 0.99785 0.99261 1.22705 0.97653 0.93451 1.00536 0.90250 1.21679 0.81299 0.96858 0.99524 1.48149 1.09306 1.33165 1.42487 1.17171 0.86513 0.80084 0.78265 1.90778 1.49212 1.42922 1.60430 1.19324 0.93900 1.18994 0.91180 1.21020 0.90317 1.02184 0.99435 1.21663 0.99995 1.16989 0.80130 1.41459 1.07054 1.45855 1.06011 1.21660 0.98854 1.03697 0.83111 1.20756 0.94743 1.03504 0.97377 1.21069 0.94098 1.00661 0.98271 1.20708 1.00927 0.98643 0.89574 1.18518 0.82165 1.05788 0.94435 1.21987 0.90098 0.90677 0.98950 1.21869 0.99086 0.93769 1.01964 1.20659 0.91245 0.87576 0.94644 0.96335 0.93814 0.94569 0.92669 0.92345 0.92104 0.91393 0.89299 0.82764 0.80970 0.82013 0.83571 0.84523 0.83577 0.89192 0.91997 0.91561 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.07 10.47 55.49 0.58 -26.49 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 3 Si 0.91 22.02 29.56 -169.99 -5.02 17.00 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.22 -6.14 9.85 -15.06 -0.15 -6.28 16 8 H 0.08 2.04 7.28 -52.49 -0.38 1.66 16 9 N -0.60 -15.01 3.35 -163.09 -0.55 -15.56 16 10 C 0.18 4.30 5.47 -1.92 -0.01 4.29 16 11 C -0.14 -2.58 6.54 -25.13 -0.16 -2.75 16 12 C -0.12 -2.27 2.87 -89.15 -0.26 -2.53 16 13 H 0.08 1.59 8.12 -51.93 -0.42 1.17 16 14 C 0.13 2.08 5.97 -3.55 -0.02 2.06 16 15 N -0.60 -9.46 2.99 -173.94 -0.52 -9.98 16 16 C 0.59 9.80 7.50 -13.06 -0.10 9.70 16 17 O -0.55 -10.71 16.49 5.12 0.08 -10.62 16 18 C -0.22 -3.20 5.12 -104.46 -0.53 -3.73 16 19 C -0.11 -1.20 8.39 -39.56 -0.33 -1.53 16 20 C -0.06 -0.59 11.53 -16.58 -0.19 -0.78 16 21 N -0.34 -3.61 2.92 -60.81 -0.18 -3.78 16 22 C 0.05 0.37 10.89 -16.53 -0.18 0.19 16 23 C -0.14 -1.03 9.98 -39.95 -0.40 -1.43 16 24 C -0.12 -1.07 10.09 -39.49 -0.40 -1.47 16 25 C -0.08 -0.96 10.06 -39.50 -0.40 -1.35 16 26 C 0.10 1.32 6.72 -83.91 -0.56 0.75 16 27 C 0.11 1.51 5.61 -3.49 -0.02 1.49 16 28 C -0.13 -2.25 5.50 -26.98 -0.15 -2.40 16 29 C 0.17 3.40 2.55 -67.98 -0.17 3.22 16 30 H 0.02 0.40 7.94 -51.93 -0.41 -0.01 16 31 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.04 0.96 7.85 -51.93 -0.41 0.55 16 33 H 0.06 1.49 7.13 -51.93 -0.37 1.12 16 34 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.03 8.08 -51.93 -0.42 0.62 16 37 H 0.09 1.47 7.02 -51.93 -0.36 1.11 16 38 H 0.15 1.41 7.61 -52.49 -0.40 1.01 16 39 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.16 0.66 8.06 -52.49 -0.42 0.23 16 41 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.09 1.16 4.65 -51.93 -0.24 0.92 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.07 1.26 8.12 -51.93 -0.42 0.84 16 47 H 0.07 1.31 7.64 -51.93 -0.40 0.91 16 LS Contribution 371.66 15.07 5.60 5.60 Total: -1.00 -34.24 371.66 -10.89 -45.12 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.75 Total: 1.58 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -4.13 Total: -2.86 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.66 Total: -55.81 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.24 -10.89 -45.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036768821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.799 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds