Wall clock time and date at job start Tue Mar 31 2020 22:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99426 * 2 1 4 4 H 1.48494 * 109.47461 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.47087 * 239.99855 * 3 2 1 6 6 H 1.48502 * 109.46850 * 120.00178 * 3 2 1 7 7 C 1.38807 * 120.00628 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00591 * 144.74517 * 7 2 1 9 9 N 1.36943 * 119.99662 * 324.74282 * 7 2 1 10 10 C 1.47776 * 125.96346 * 353.97523 * 9 7 2 11 11 C 1.55092 * 104.91725 * 201.58234 * 10 9 7 12 12 C 1.56114 * 101.08039 * 322.94235 * 11 10 9 13 13 H 1.09004 * 112.18960 * 157.73793 * 12 11 10 14 14 C 1.53113 * 106.64392 * 281.14422 * 12 11 10 15 15 N 1.46174 * 109.62959 * 159.76568 * 14 12 11 16 16 C 1.34776 * 120.96139 * 121.19063 * 15 14 12 17 17 O 1.21590 * 119.99791 * 354.93973 * 16 15 14 18 18 C 1.47575 * 120.00215 * 174.93598 * 16 15 14 19 19 C 1.40231 * 119.83550 * 146.07234 * 18 16 15 20 20 C 1.36201 * 120.38221 * 179.74762 * 19 18 16 21 21 C 1.39918 * 119.95597 * 0.49593 * 20 19 18 22 22 C 1.46253 * 133.83819 * 179.78462 * 21 20 19 23 23 C 1.34454 * 107.03469 * 180.02562 * 22 21 20 24 24 N 1.36565 * 109.97353 * 359.97438 * 23 22 21 25 25 H 0.96998 * 125.06357 * 179.97438 * 24 23 22 26 26 C 1.37813 * 109.86129 * 0.02562 * 24 23 22 27 27 C 1.38689 * 133.37270 * 180.02562 * 26 24 23 28 28 C 1.46534 * 118.06182 * 301.50237 * 15 14 12 29 29 C 1.51782 * 110.12890 * 53.46858 * 28 15 14 30 30 C 1.46248 * 125.96343 * 173.67458 * 9 7 2 31 31 H 1.08999 * 105.50475 * 70.58560 * 30 9 7 32 32 H 0.96998 * 119.99055 * 177.31891 * 1 2 3 33 33 H 1.09004 * 110.35375 * 320.44866 * 10 9 7 34 34 H 1.09004 * 110.34653 * 82.61456 * 10 9 7 35 35 H 1.09003 * 111.09797 * 80.88989 * 11 10 9 36 36 H 1.08996 * 111.09842 * 204.99053 * 11 10 9 37 37 H 1.08995 * 109.52960 * 279.95155 * 14 12 11 38 38 H 1.08998 * 109.52527 * 40.16431 * 14 12 11 39 39 H 1.08006 * 119.80956 * 359.97438 * 19 18 16 40 40 H 1.07997 * 120.02354 * 180.25082 * 20 19 18 41 41 H 1.07999 * 126.48238 * 359.97438 * 22 21 20 42 42 H 1.08001 * 125.01297 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.16253 * 359.93818 * 27 26 24 44 44 H 1.09000 * 109.35924 * 293.26983 * 28 15 14 45 45 H 1.09001 * 109.36076 * 173.66909 * 28 15 14 46 46 H 1.09005 * 108.36197 * 196.93448 * 29 28 15 47 47 H 1.08997 * 108.36966 * 79.82972 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6966 -1.2125 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 2.9418 -1.2876 -0.5404 9 7 1.5141 -2.2795 0.6836 10 6 0.3267 -2.2771 1.5633 11 6 0.5140 -3.5064 2.4902 12 6 1.1545 -4.5319 1.5027 13 1 1.7116 -5.3113 2.0227 14 6 0.0112 -5.0992 0.6569 15 7 0.5500 -5.6764 -0.5732 16 6 0.3506 -6.9747 -0.8753 17 8 -0.2050 -7.7058 -0.0784 18 6 0.8066 -7.5088 -2.1732 19 6 1.2704 -8.8293 -2.2601 20 6 1.6891 -9.3353 -3.4533 21 6 1.6673 -8.5323 -4.5989 22 6 2.0390 -8.7509 -5.9964 23 6 1.7983 -7.6022 -6.6524 24 7 1.3027 -6.6671 -5.7892 25 1 1.0542 -5.7613 -6.0315 26 6 1.2092 -7.2021 -4.5226 27 6 0.7799 -6.6967 -3.3045 28 6 1.3189 -4.8041 -1.4649 29 6 2.4379 -4.1264 -0.6952 30 6 2.0632 -3.6349 0.6663 31 1 3.0020 -3.5760 1.2170 32 1 -0.4849 -0.8392 -0.0393 33 1 0.2927 -1.3602 2.1517 34 1 -0.5832 -2.3812 0.9720 35 1 1.1917 -3.2779 3.3127 36 1 -0.4449 -3.8666 2.8626 37 1 -0.5123 -5.8702 1.2221 38 1 -0.6834 -4.2994 0.3999 39 1 1.2922 -9.4500 -1.3764 40 1 2.0413 -10.3544 -3.5144 41 1 2.4332 -9.6624 -6.4210 42 1 1.9706 -7.4427 -7.7066 43 1 0.4269 -5.6785 -3.2336 44 1 0.6589 -4.0456 -1.8858 45 1 1.7448 -5.3986 -2.2731 46 1 2.7927 -3.2782 -1.2808 47 1 3.2604 -4.8339 -0.5905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036829723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:46 Heat of formation + Delta-G solvation = 69.879992 kcal Electronic energy + Delta-G solvation = -29898.239901 eV Core-core repulsion = 26047.502354 eV Total energy + Delta-G solvation = -3850.737548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.52841 -40.27530 -38.50632 -36.63687 -35.41853 -33.14644 -32.15613 -31.89882 -29.79440 -29.68093 -28.90379 -27.75754 -25.44133 -24.14236 -23.44515 -22.53814 -22.30048 -20.94326 -20.19473 -19.89085 -18.63160 -17.93252 -17.43587 -16.81778 -16.20233 -15.86649 -15.41925 -15.08401 -14.57971 -14.52942 -14.24124 -14.14371 -14.05905 -13.76508 -13.39321 -13.34399 -13.17805 -12.88861 -12.67872 -12.59354 -11.96576 -11.92285 -11.81342 -11.45885 -11.32432 -11.04723 -10.97455 -10.62641 -10.34138 -10.28718 -10.21083 -10.04364 -9.98735 -9.90978 -9.60042 -9.58513 -8.48912 -8.33784 -8.26439 -7.91702 -6.96943 -6.22145 -3.07502 0.67564 1.36298 2.37853 2.83500 2.95692 3.21656 3.46318 3.53443 3.69734 3.80320 4.44493 4.54242 4.58980 4.61112 4.95583 5.02068 5.11260 5.13001 5.17045 5.21707 5.27484 5.33292 5.36453 5.43184 5.50652 5.64195 5.71346 5.73569 5.77217 5.82948 5.93028 6.08538 6.14096 6.17236 6.19596 6.32349 6.35634 6.43705 6.46093 6.50514 6.51524 6.67439 6.84069 6.87076 6.90642 7.00387 7.02737 7.25032 7.61873 7.75909 8.29669 8.44682 8.97051 9.79770 10.38222 11.15622 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013652 B = 0.003363 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.470737 B = 8323.286681 C = 9854.079545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.020 4.020 3 Si 1.056 2.944 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.343 4.343 8 H 0.069 0.931 9 N -0.592 5.592 10 C 0.142 3.858 11 C -0.132 4.132 12 C -0.106 4.106 13 H 0.081 0.919 14 C 0.120 3.880 15 N -0.595 5.595 16 C 0.560 3.440 17 O -0.545 6.545 18 C -0.106 4.106 19 C -0.092 4.092 20 C -0.082 4.082 21 C -0.089 4.089 22 C -0.213 4.213 23 C 0.060 3.940 24 N -0.592 5.592 25 H 0.418 0.582 26 C 0.083 3.917 27 C -0.093 4.093 28 C 0.100 3.900 29 C -0.135 4.135 30 C 0.173 3.827 31 H 0.010 0.990 32 H 0.268 0.732 33 H 0.052 0.948 34 H 0.023 0.977 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.147 0.853 42 H 0.172 0.828 43 H 0.137 0.863 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.098 -15.804 -10.171 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.223 4.223 3 Si 0.886 3.114 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.470 4.470 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.125 4.125 13 H 0.099 0.901 14 C -0.002 4.002 15 N -0.325 5.325 16 C 0.349 3.651 17 O -0.424 6.424 18 C -0.111 4.111 19 C -0.112 4.112 20 C -0.101 4.101 21 C -0.094 4.094 22 C -0.238 4.238 23 C -0.068 4.068 24 N -0.195 5.195 25 H 0.255 0.745 26 C -0.024 4.024 27 C -0.114 4.114 28 C -0.022 4.022 29 C -0.175 4.175 30 C 0.066 3.934 31 H 0.028 0.972 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.150 0.850 40 H 0.146 0.854 41 H 0.165 0.835 42 H 0.189 0.811 43 H 0.154 0.846 44 H 0.087 0.913 45 H 0.109 0.891 46 H 0.102 0.898 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.654 -14.283 -9.831 17.541 hybrid contribution 0.237 -1.041 -0.379 1.133 sum 2.891 -15.323 -10.210 18.639 Atomic orbital electron populations 1.70839 1.06847 1.30107 1.47041 1.25579 0.96128 1.00706 0.99866 0.83633 0.75130 0.76408 0.76201 1.21241 1.22157 1.22216 1.19582 1.05420 0.89365 1.32619 0.91326 1.44712 1.31286 1.03414 1.52366 1.21643 0.90122 0.95390 0.91226 1.23078 0.99917 0.96488 0.97620 1.22327 0.96602 0.97069 0.96546 0.90080 1.21585 0.95787 0.98085 0.84767 1.47726 1.52774 1.09031 1.23004 1.18206 0.79161 0.81411 0.86273 1.90750 1.43990 1.57353 1.50312 1.19528 1.03859 0.95022 0.92649 1.20620 0.98635 0.93740 0.98178 1.20177 1.00043 0.99292 0.90570 1.19388 1.02614 0.93127 0.94288 1.21712 1.11176 0.99056 0.91833 1.21891 1.00030 0.89018 0.95847 1.41801 1.56995 1.14326 1.06360 0.74458 1.18069 1.04255 0.93952 0.86121 1.20505 1.01572 0.99917 0.89436 1.21892 0.94168 0.93202 0.92950 1.21252 0.96967 1.00198 0.99119 1.19433 0.95372 0.85898 0.92736 0.97234 0.92030 0.92936 0.95966 0.91410 0.91505 0.89452 0.90729 0.85042 0.85446 0.83508 0.81123 0.84568 0.91256 0.89075 0.89825 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.41 12.87 55.49 0.71 -25.69 16 2 C -0.02 -0.56 4.99 -17.43 -0.09 -0.65 16 3 Si 1.06 24.72 30.04 -169.99 -5.11 19.62 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.34 -9.16 9.20 -15.06 -0.14 -9.30 16 8 H 0.07 1.83 7.42 -52.49 -0.39 1.44 16 9 N -0.59 -14.16 3.28 -165.72 -0.54 -14.70 16 10 C 0.14 3.17 4.83 -2.24 -0.01 3.16 16 11 C -0.13 -2.35 6.47 -23.96 -0.15 -2.50 16 12 C -0.11 -1.85 3.71 -89.08 -0.33 -2.18 16 13 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 14 C 0.12 2.06 5.50 -4.16 -0.02 2.04 16 15 N -0.59 -9.83 2.94 -175.80 -0.52 -10.35 16 16 C 0.56 9.39 7.39 -12.45 -0.09 9.30 16 17 O -0.55 -10.53 16.21 5.29 0.09 -10.44 16 18 C -0.11 -1.52 5.37 -104.95 -0.56 -2.09 16 19 C -0.09 -1.19 9.52 -39.57 -0.38 -1.56 16 20 C -0.08 -0.92 10.03 -39.69 -0.40 -1.32 16 21 C -0.09 -1.03 6.37 -105.05 -0.67 -1.70 16 22 C -0.21 -1.91 11.08 -37.70 -0.42 -2.33 16 23 C 0.06 0.44 11.81 -16.78 -0.20 0.25 16 24 N -0.59 -5.18 6.06 -10.69 -0.06 -5.24 16 25 H 0.42 2.65 8.96 -40.82 -0.37 2.28 16 26 C 0.08 0.96 7.26 -84.01 -0.61 0.35 16 27 C -0.09 -1.19 7.38 -39.02 -0.29 -1.48 16 28 C 0.10 1.59 4.82 -4.64 -0.02 1.57 16 29 C -0.14 -2.42 5.60 -29.07 -0.16 -2.58 16 30 C 0.17 3.48 2.63 -69.97 -0.18 3.29 16 31 H 0.01 0.21 8.06 -51.93 -0.42 -0.20 16 32 H 0.27 7.79 6.13 -40.82 -0.25 7.54 16 33 H 0.05 1.31 7.70 -51.93 -0.40 0.91 16 34 H 0.02 0.53 5.94 -51.93 -0.31 0.22 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.04 7.98 -51.93 -0.41 0.62 16 37 H 0.09 1.48 6.99 -51.93 -0.36 1.12 16 38 H 0.07 1.37 6.49 -51.93 -0.34 1.03 16 39 H 0.13 1.63 7.97 -52.48 -0.42 1.21 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.14 1.67 5.81 -52.49 -0.30 1.37 16 44 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 45 H 0.09 1.27 4.29 -51.93 -0.22 1.04 16 46 H 0.08 1.64 6.74 -51.93 -0.35 1.29 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 363.80 15.07 5.48 5.48 Total: -1.00 -32.90 363.80 -10.97 -43.87 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.29 Total: 5.19 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -4.73 Total: -7.73 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.41 Total: -55.99 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.11 Total: 19.62 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.90 -10.97 -43.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036829723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.750 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds