Wall clock time and date at job start Tue Mar 31 2020 22:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99426 * 2 1 4 4 H 1.48494 * 109.47461 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.47087 * 239.99855 * 3 2 1 6 6 H 1.48502 * 109.46850 * 120.00178 * 3 2 1 7 7 C 1.38807 * 120.00628 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00591 * 144.74517 * 7 2 1 9 9 N 1.36943 * 119.99662 * 324.74282 * 7 2 1 10 10 C 1.47776 * 125.96346 * 353.97523 * 9 7 2 11 11 C 1.55092 * 104.91725 * 201.58234 * 10 9 7 12 12 C 1.56114 * 101.08039 * 322.94235 * 11 10 9 13 13 H 1.09004 * 112.18960 * 157.73793 * 12 11 10 14 14 C 1.53113 * 106.64392 * 281.14422 * 12 11 10 15 15 N 1.46174 * 109.62959 * 159.76568 * 14 12 11 16 16 C 1.34776 * 120.96139 * 121.19063 * 15 14 12 17 17 O 1.21590 * 119.99791 * 354.93973 * 16 15 14 18 18 C 1.47575 * 120.00215 * 174.93598 * 16 15 14 19 19 C 1.40231 * 119.83550 * 146.07234 * 18 16 15 20 20 C 1.36201 * 120.38221 * 179.74762 * 19 18 16 21 21 C 1.39918 * 119.95597 * 0.49593 * 20 19 18 22 22 C 1.46253 * 133.83819 * 179.78462 * 21 20 19 23 23 C 1.34454 * 107.03469 * 180.02562 * 22 21 20 24 24 N 1.36565 * 109.97353 * 359.97438 * 23 22 21 25 25 H 0.96998 * 125.06357 * 179.97438 * 24 23 22 26 26 C 1.37813 * 109.86129 * 0.02562 * 24 23 22 27 27 C 1.38689 * 133.37270 * 180.02562 * 26 24 23 28 28 C 1.46534 * 118.06182 * 301.50237 * 15 14 12 29 29 C 1.51782 * 110.12890 * 53.46858 * 28 15 14 30 30 C 1.46248 * 125.96343 * 173.67458 * 9 7 2 31 31 H 1.08999 * 105.50475 * 70.58560 * 30 9 7 32 32 H 0.96998 * 119.99055 * 177.31891 * 1 2 3 33 33 H 1.09004 * 110.35375 * 320.44866 * 10 9 7 34 34 H 1.09004 * 110.34653 * 82.61456 * 10 9 7 35 35 H 1.09003 * 111.09797 * 80.88989 * 11 10 9 36 36 H 1.08996 * 111.09842 * 204.99053 * 11 10 9 37 37 H 1.08995 * 109.52960 * 279.95155 * 14 12 11 38 38 H 1.08998 * 109.52527 * 40.16431 * 14 12 11 39 39 H 1.08006 * 119.80956 * 359.97438 * 19 18 16 40 40 H 1.07997 * 120.02354 * 180.25082 * 20 19 18 41 41 H 1.07999 * 126.48238 * 359.97438 * 22 21 20 42 42 H 1.08001 * 125.01297 * 180.02562 * 23 22 21 43 43 H 1.07999 * 120.16253 * 359.93818 * 27 26 24 44 44 H 1.09000 * 109.35924 * 293.26983 * 28 15 14 45 45 H 1.09001 * 109.36076 * 173.66909 * 28 15 14 46 46 H 1.09005 * 108.36197 * 196.93448 * 29 28 15 47 47 H 1.08997 * 108.36966 * 79.82972 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6966 -1.2125 6 1 3.1039 1.6965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 2.9418 -1.2876 -0.5404 9 7 1.5141 -2.2795 0.6836 10 6 0.3267 -2.2771 1.5633 11 6 0.5140 -3.5064 2.4902 12 6 1.1545 -4.5319 1.5027 13 1 1.7116 -5.3113 2.0227 14 6 0.0112 -5.0992 0.6569 15 7 0.5500 -5.6764 -0.5732 16 6 0.3506 -6.9747 -0.8753 17 8 -0.2050 -7.7058 -0.0784 18 6 0.8066 -7.5088 -2.1732 19 6 1.2704 -8.8293 -2.2601 20 6 1.6891 -9.3353 -3.4533 21 6 1.6673 -8.5323 -4.5989 22 6 2.0390 -8.7509 -5.9964 23 6 1.7983 -7.6022 -6.6524 24 7 1.3027 -6.6671 -5.7892 25 1 1.0542 -5.7613 -6.0315 26 6 1.2092 -7.2021 -4.5226 27 6 0.7799 -6.6967 -3.3045 28 6 1.3189 -4.8041 -1.4649 29 6 2.4379 -4.1264 -0.6952 30 6 2.0632 -3.6349 0.6663 31 1 3.0020 -3.5760 1.2170 32 1 -0.4849 -0.8392 -0.0393 33 1 0.2927 -1.3602 2.1517 34 1 -0.5832 -2.3812 0.9720 35 1 1.1917 -3.2779 3.3127 36 1 -0.4449 -3.8666 2.8626 37 1 -0.5123 -5.8702 1.2221 38 1 -0.6834 -4.2994 0.3999 39 1 1.2922 -9.4500 -1.3764 40 1 2.0413 -10.3544 -3.5144 41 1 2.4332 -9.6624 -6.4210 42 1 1.9706 -7.4427 -7.7066 43 1 0.4269 -5.6785 -3.2336 44 1 0.6589 -4.0456 -1.8858 45 1 1.7448 -5.3986 -2.2731 46 1 2.7927 -3.2782 -1.2808 47 1 3.2604 -4.8339 -0.5905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036829723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:45 Heat of formation + Delta-G solvation = 50.758506 kcal Electronic energy + Delta-G solvation = -29899.069071 eV Core-core repulsion = 26047.502354 eV Total energy + Delta-G solvation = -3851.566717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.40179 -41.56611 -39.97052 -37.61226 -36.93160 -34.90160 -33.49245 -33.10625 -31.23658 -30.54396 -30.18057 -29.21710 -26.91249 -25.92740 -24.61206 -23.82625 -23.32451 -21.96079 -21.66346 -21.12393 -20.09730 -19.19180 -18.72156 -18.19076 -17.43176 -16.97699 -16.91085 -16.34642 -16.01743 -15.81185 -15.51069 -15.38530 -15.19517 -15.02659 -14.97563 -14.45349 -14.36864 -14.31418 -14.01654 -13.85439 -13.49064 -13.03723 -12.99300 -12.79628 -12.63656 -12.54422 -12.43002 -12.07478 -12.02001 -11.88428 -11.84831 -11.77347 -11.64566 -11.39423 -11.05499 -10.66693 -10.37428 -9.76481 -9.28464 -8.95832 -8.69538 -8.37866 -5.18273 -0.25778 0.45287 1.53369 1.57263 1.65458 1.80835 1.83860 1.95020 2.22642 2.63368 2.84435 3.18322 3.33881 3.46945 3.61436 3.65951 3.76213 3.88673 3.91902 4.01774 4.07585 4.16722 4.22685 4.30764 4.33581 4.38089 4.39865 4.51563 4.62642 4.66226 4.69129 4.76461 4.84394 4.93125 4.97077 4.99500 5.01528 5.09418 5.19059 5.26219 5.29405 5.30226 5.43751 5.50117 5.66415 5.72701 5.75750 6.08259 6.29954 6.34245 6.64015 6.91717 6.98378 7.76217 8.37509 9.00915 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013652 B = 0.003363 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.470737 B = 8323.286681 C = 9854.079545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.073 4.073 3 Si 1.106 2.894 4 H -0.295 1.295 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.342 4.342 8 H 0.065 0.935 9 N -0.609 5.609 10 C 0.146 3.854 11 C -0.117 4.117 12 C -0.095 4.095 13 H 0.102 0.898 14 C 0.125 3.875 15 N -0.595 5.595 16 C 0.562 3.438 17 O -0.575 6.575 18 C -0.131 4.131 19 C -0.104 4.104 20 C -0.079 4.079 21 C -0.101 4.101 22 C -0.230 4.230 23 C 0.078 3.922 24 N -0.588 5.588 25 H 0.429 0.571 26 C 0.064 3.936 27 C -0.094 4.094 28 C 0.112 3.888 29 C -0.131 4.131 30 C 0.168 3.832 31 H 0.000 1.000 32 H 0.255 0.745 33 H 0.019 0.981 34 H 0.005 0.995 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.130 0.870 40 H 0.153 0.847 41 H 0.170 0.830 42 H 0.214 0.786 43 H 0.134 0.866 44 H 0.052 0.948 45 H 0.116 0.884 46 H 0.064 0.936 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.628 -17.402 -12.103 21.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.270 4.270 3 Si 0.932 3.068 4 H -0.222 1.222 5 H -0.200 1.200 6 H -0.214 1.214 7 C -0.470 4.470 8 H 0.083 0.917 9 N -0.335 5.335 10 C 0.020 3.980 11 C -0.156 4.156 12 C -0.115 4.115 13 H 0.120 0.880 14 C 0.002 3.998 15 N -0.326 5.326 16 C 0.353 3.647 17 O -0.456 6.456 18 C -0.135 4.135 19 C -0.124 4.124 20 C -0.097 4.097 21 C -0.106 4.106 22 C -0.254 4.254 23 C -0.050 4.050 24 N -0.191 5.191 25 H 0.268 0.732 26 C -0.043 4.043 27 C -0.115 4.115 28 C -0.010 4.010 29 C -0.171 4.171 30 C 0.061 3.939 31 H 0.018 0.982 32 H 0.066 0.934 33 H 0.038 0.962 34 H 0.023 0.977 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.076 0.924 39 H 0.148 0.852 40 H 0.171 0.829 41 H 0.187 0.813 42 H 0.231 0.769 43 H 0.152 0.848 44 H 0.071 0.929 45 H 0.133 0.867 46 H 0.083 0.917 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.210 -15.898 -11.780 20.230 hybrid contribution -0.203 -0.619 0.083 0.657 sum 4.006 -16.517 -11.698 20.632 Atomic orbital electron populations 1.70944 1.07758 1.29319 1.50085 1.26794 0.96225 1.03830 1.00113 0.82946 0.74074 0.72631 0.77144 1.22161 1.20007 1.21406 1.19796 1.04902 0.90457 1.31811 0.91676 1.44921 1.31687 1.04707 1.52217 1.21544 0.89137 0.96067 0.91239 1.23000 1.01621 0.94147 0.96838 1.22296 0.96236 0.96906 0.96035 0.87992 1.21462 0.95437 0.97671 0.85228 1.47726 1.52780 1.09249 1.22797 1.18597 0.78295 0.80905 0.86885 1.90719 1.45366 1.57955 1.51589 1.19384 1.06276 0.96039 0.91770 1.20680 0.99461 0.93265 0.99004 1.20437 0.99017 1.00398 0.89862 1.19831 1.02109 0.93040 0.95661 1.22076 1.12028 1.00722 0.90588 1.22639 0.97193 0.87861 0.97295 1.41955 1.56418 1.15211 1.05538 0.73183 1.18147 1.04736 0.94598 0.86816 1.20428 1.01608 0.99641 0.89819 1.21805 0.93188 0.92942 0.93076 1.21156 0.98237 1.00035 0.97660 1.19632 0.95167 0.84863 0.94220 0.98246 0.93421 0.96250 0.97709 0.90550 0.88844 0.88907 0.92426 0.85228 0.82922 0.81294 0.76893 0.84791 0.92934 0.86679 0.91726 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.50 12.87 21.65 0.28 -56.23 16 2 C -0.07 -4.08 4.99 84.86 0.42 -3.66 16 3 Si 1.11 50.62 30.04 68.60 2.06 52.68 16 4 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.34 -18.64 9.20 84.03 0.77 -17.86 16 8 H 0.07 3.53 7.42 -2.92 -0.02 3.51 16 9 N -0.61 -29.85 3.28 -678.20 -2.23 -32.08 16 10 C 0.15 6.74 4.83 86.85 0.42 7.16 16 11 C -0.12 -4.11 6.47 32.39 0.21 -3.90 16 12 C -0.10 -3.26 3.71 -9.80 -0.04 -3.30 16 13 H 0.10 3.15 8.14 -2.38 -0.02 3.13 16 14 C 0.12 4.28 5.50 86.48 0.48 4.76 16 15 N -0.60 -19.72 2.94 -828.38 -2.44 -22.15 16 16 C 0.56 18.89 7.39 86.71 0.64 19.53 16 17 O -0.58 -22.35 16.21 -4.00 -0.06 -22.42 16 18 C -0.13 -3.71 5.37 -20.08 -0.11 -3.81 16 19 C -0.10 -2.62 9.52 22.28 0.21 -2.41 16 20 C -0.08 -1.64 10.03 22.20 0.22 -1.41 16 21 C -0.10 -2.09 6.37 -20.14 -0.13 -2.22 16 22 C -0.23 -3.31 11.08 23.49 0.26 -3.05 16 23 C 0.08 0.84 11.81 83.09 0.98 1.82 16 24 N -0.59 -8.64 6.06 -187.72 -1.14 -9.78 16 25 H 0.43 4.34 8.96 -92.71 -0.83 3.51 16 26 C 0.06 1.39 7.26 38.96 0.28 1.67 16 27 C -0.09 -2.35 7.38 22.63 0.17 -2.18 16 28 C 0.11 3.57 4.82 85.97 0.41 3.98 16 29 C -0.13 -4.67 5.60 29.08 0.16 -4.50 16 30 C 0.17 6.74 2.63 43.81 0.12 6.86 16 31 H 0.00 -0.01 8.06 -2.39 -0.02 -0.03 16 32 H 0.26 15.58 6.13 -92.71 -0.57 15.01 16 33 H 0.02 1.00 7.70 -2.39 -0.02 0.98 16 34 H 0.01 0.26 5.94 -2.38 -0.01 0.25 16 35 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.09 2.79 7.98 -2.39 -0.02 2.77 16 37 H 0.09 3.11 6.99 -2.39 -0.02 3.09 16 38 H 0.06 2.18 6.49 -2.39 -0.02 2.16 16 39 H 0.13 3.20 7.97 -2.91 -0.02 3.18 16 40 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 42 H 0.21 0.40 8.06 -2.91 -0.02 0.38 16 43 H 0.13 3.28 5.81 -2.91 -0.02 3.27 16 44 H 0.05 1.85 8.04 -2.39 -0.02 1.83 16 45 H 0.12 3.14 4.29 -2.39 -0.01 3.13 16 46 H 0.06 2.55 6.74 -2.38 -0.02 2.54 16 47 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -73.52 363.80 2.34 -71.18 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.38 Total: 21.33 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 5.49 Total: -2.54 kcal Atomic # 7 Polarization: -114.71 SS G_CDS: -5.53 Total: -120.24 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.06 Total: -22.42 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 2.06 Total: 52.68 kcal Total: -73.52 2.34 -71.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036829723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.943 kcal (2) G-P(sol) polarization free energy of solvation -73.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds