Wall clock time and date at job start Tue Mar 31 2020 22:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99888 * 2 1 4 4 H 1.48496 * 109.47118 * 270.00191 * 3 2 1 5 5 H 1.48496 * 109.47313 * 30.00551 * 3 2 1 6 6 H 1.48504 * 109.46941 * 150.00268 * 3 2 1 7 7 C 1.38817 * 119.99587 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99371 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00183 * 359.97438 * 7 2 1 10 10 C 1.47430 * 126.05456 * 0.02562 * 9 7 2 11 11 C 1.54505 * 107.14811 * 181.59572 * 10 9 7 12 12 C 1.56014 * 102.62377 * 22.82628 * 11 10 9 13 13 H 1.08996 * 112.90032 * 202.90512 * 12 11 10 14 14 C 1.53217 * 106.36024 * 78.29344 * 12 11 10 15 15 N 1.46540 * 110.25125 * 202.96806 * 14 12 11 16 16 C 1.34768 * 121.01514 * 235.56743 * 15 14 12 17 17 O 1.21591 * 120.00110 * 356.23275 * 16 15 14 18 18 C 1.47584 * 120.00153 * 176.23359 * 16 15 14 19 19 C 1.40246 * 119.82847 * 50.29886 * 18 16 15 20 20 C 1.36192 * 120.37373 * 179.73656 * 19 18 16 21 21 C 1.39920 * 119.96349 * 0.52002 * 20 19 18 22 22 C 1.46250 * 133.83834 * 179.75818 * 21 20 19 23 23 C 1.34454 * 107.03311 * 180.02562 * 22 21 20 24 24 N 1.36561 * 109.97496 * 359.97438 * 23 22 21 25 25 H 0.97004 * 125.07049 * 179.97438 * 24 23 22 26 26 C 1.37821 * 109.86491 * 0.02562 * 24 23 22 27 27 C 1.38683 * 133.38002 * 180.02562 * 26 24 23 28 28 C 1.47147 * 117.96936 * 55.50013 * 15 14 12 29 29 C 1.53039 * 107.73631 * 302.66279 * 28 15 14 30 30 C 1.46461 * 126.05348 * 179.97438 * 9 7 2 31 31 H 1.09003 * 108.34701 * 269.14614 * 30 9 7 32 32 H 0.97003 * 119.99933 * 359.97438 * 1 2 3 33 33 H 1.08998 * 109.90500 * 300.97071 * 10 9 7 34 34 H 1.08996 * 109.90311 * 62.03426 * 10 9 7 35 35 H 1.08998 * 110.78240 * 141.11336 * 11 10 9 36 36 H 1.08997 * 110.77838 * 264.35603 * 11 10 9 37 37 H 1.08997 * 109.34682 * 323.15657 * 14 12 11 38 38 H 1.08998 * 109.34879 * 82.71319 * 14 12 11 39 39 H 1.08000 * 119.80813 * 0.02562 * 19 18 16 40 40 H 1.08006 * 120.01850 * 180.28139 * 20 19 18 41 41 H 1.08001 * 126.48464 * 359.97438 * 22 21 20 42 42 H 1.07995 * 125.01301 * 180.02562 * 23 22 21 43 43 H 1.08002 * 120.16296 * 359.94817 * 27 26 24 44 44 H 1.08995 * 109.81532 * 183.08750 * 28 15 14 45 45 H 1.09001 * 109.81246 * 62.24174 * 28 15 14 46 46 H 1.09001 * 109.14885 * 174.78947 * 29 28 15 47 47 H 1.09003 * 109.15550 * 293.94734 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1406 -2.5436 -0.0005 11 6 -0.4380 -4.0592 0.0406 12 6 0.8716 -4.6472 0.6515 13 1 1.0211 -5.6978 0.4029 14 6 0.7968 -4.3910 2.1603 15 7 2.1417 -4.3927 2.7423 16 6 2.4553 -5.2141 3.7636 17 8 1.5992 -5.9197 4.2613 18 6 3.8379 -5.2574 4.2780 19 6 4.4974 -4.0642 4.6073 20 6 5.7714 -4.0916 5.0880 21 6 6.4329 -5.3144 5.2451 22 6 7.7649 -5.6924 5.7162 23 6 7.8422 -7.0328 5.6451 24 7 6.6688 -7.5430 5.1679 25 1 6.4865 -8.4856 5.0289 26 6 5.7826 -6.5191 4.9119 27 6 4.4832 -6.4824 4.4285 28 6 3.1397 -3.4712 2.1765 29 6 3.2667 -3.7811 0.6832 30 6 1.9199 -3.7267 -0.0016 31 1 2.0442 -4.0461 -1.0363 32 1 -0.4850 0.8401 0.0004 33 1 -0.5652 -2.0582 0.8782 34 1 -0.5603 -2.1048 -0.9057 35 1 -1.2927 -4.2683 0.6839 36 1 -0.6078 -4.4473 -0.9637 37 1 0.3281 -3.4234 2.3395 38 1 0.1991 -5.1721 2.6300 39 1 3.9903 -3.1188 4.4834 40 1 6.2722 -3.1695 5.3440 41 1 8.5401 -5.0216 6.0560 42 1 8.7046 -7.6195 5.9250 43 1 3.9745 -7.3993 4.1696 44 1 4.1010 -3.6206 2.6680 45 1 2.8109 -2.4410 2.3135 46 1 3.9317 -3.0510 0.2219 47 1 3.6905 -4.7777 0.5596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036829726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:56 Heat of formation + Delta-G solvation = 64.086455 kcal Electronic energy + Delta-G solvation = -29957.383343 eV Core-core repulsion = 26106.394569 eV Total energy + Delta-G solvation = -3850.988774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.43165 -40.09737 -38.32519 -36.61114 -34.93255 -32.78470 -32.11674 -31.58237 -29.98210 -29.39633 -28.89841 -27.43871 -25.38623 -24.22722 -23.08007 -22.55457 -22.15047 -20.90424 -20.05709 -19.67589 -18.49201 -17.98073 -16.99339 -16.41711 -16.00332 -15.78023 -15.20171 -14.94569 -14.62262 -14.55837 -14.18454 -14.03744 -13.89012 -13.85067 -13.37883 -13.29722 -12.83615 -12.76267 -12.39815 -12.13382 -11.94315 -11.78472 -11.48140 -11.28556 -11.17565 -11.06835 -10.94479 -10.76736 -10.60908 -10.14994 -10.03600 -9.89897 -9.89178 -9.62715 -9.59860 -9.50276 -8.60073 -8.34097 -8.14645 -7.89198 -6.81431 -5.71719 -3.04345 0.82228 1.41190 2.44474 2.78956 3.04647 3.38198 3.39055 3.43976 3.46376 3.81957 4.48508 4.53307 4.64001 4.70130 5.00549 5.16433 5.19499 5.22027 5.30896 5.38586 5.42698 5.53645 5.57721 5.61171 5.67684 5.75847 5.81021 5.86912 5.93046 6.07309 6.13941 6.27825 6.32890 6.33713 6.38114 6.40270 6.46880 6.48473 6.55901 6.58693 6.73813 6.79969 6.92488 6.94564 6.98804 7.27249 7.56954 7.62049 7.79643 7.82311 8.24914 8.42751 9.20759 9.83066 10.50906 11.40376 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014402 B = 0.003393 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.710531 B = 8250.269907 C = 9508.695321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.176 3.824 11 C -0.142 4.142 12 C -0.116 4.116 13 H 0.076 0.924 14 C 0.127 3.873 15 N -0.590 5.590 16 C 0.559 3.441 17 O -0.551 6.551 18 C -0.096 4.096 19 C -0.114 4.114 20 C -0.076 4.076 21 C -0.094 4.094 22 C -0.208 4.208 23 C 0.053 3.947 24 N -0.594 5.594 25 H 0.416 0.584 26 C 0.085 3.915 27 C -0.077 4.077 28 C 0.102 3.898 29 C -0.127 4.127 30 C 0.171 3.829 31 H 0.017 0.983 32 H 0.251 0.749 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.147 0.853 42 H 0.170 0.830 43 H 0.126 0.874 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.128 -13.701 8.865 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.352 4.352 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.181 4.181 12 C -0.137 4.137 13 H 0.095 0.905 14 C 0.005 3.995 15 N -0.320 5.320 16 C 0.347 3.653 17 O -0.431 6.431 18 C -0.101 4.101 19 C -0.134 4.134 20 C -0.095 4.095 21 C -0.099 4.099 22 C -0.233 4.233 23 C -0.074 4.074 24 N -0.196 5.196 25 H 0.252 0.748 26 C -0.021 4.021 27 C -0.098 4.098 28 C -0.019 4.019 29 C -0.167 4.167 30 C 0.063 3.937 31 H 0.034 0.966 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.165 0.835 42 H 0.187 0.813 43 H 0.144 0.856 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.094 0.906 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.604 -13.931 9.105 20.877 hybrid contribution 0.409 0.517 -0.250 0.705 sum 13.013 -13.414 8.856 20.681 Atomic orbital electron populations 1.69955 1.04856 1.24959 1.56956 1.24771 0.95625 0.97512 1.02420 0.86198 0.78622 0.83878 0.77539 1.21750 1.21807 1.20665 1.18957 0.90373 0.82169 1.43706 0.90331 1.44315 1.01476 0.99372 1.86756 1.21243 0.84335 0.88253 1.01000 1.23135 0.95898 0.99623 0.99474 1.22756 0.97868 0.98411 0.94631 0.90548 1.21563 0.82505 1.03016 0.92441 1.47998 1.13424 1.37992 1.32627 1.18205 0.87540 0.79663 0.79929 1.90754 1.49793 1.43653 1.58872 1.19507 0.94229 0.93441 1.02880 1.20834 0.94970 0.97363 1.00215 1.20191 0.94149 0.96283 0.98863 1.19350 0.94741 0.92501 1.03323 1.21724 0.96792 0.94241 1.10576 1.21839 0.89581 0.94841 1.01127 1.41749 1.12098 1.08265 1.57536 0.74751 1.18037 0.92253 0.88018 1.03792 1.19871 0.91322 0.97542 1.01098 1.22132 0.91568 0.94356 0.93891 1.21584 0.99039 1.00716 0.95327 1.20262 0.90825 0.87057 0.95566 0.96606 0.93812 0.93499 0.93971 0.92016 0.92376 0.90179 0.90276 0.84848 0.85361 0.83524 0.81256 0.85645 0.89684 0.89107 0.90646 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.11 10.38 55.49 0.58 -25.53 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.33 29.55 -169.99 -5.02 16.30 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.22 -5.75 9.02 -15.06 -0.14 -5.88 16 8 H 0.08 1.93 6.69 -52.49 -0.35 1.58 16 9 N -0.59 -13.98 3.12 -164.44 -0.51 -14.50 16 10 C 0.18 4.10 4.64 -2.74 -0.01 4.08 16 11 C -0.14 -2.62 6.29 -24.33 -0.15 -2.77 16 12 C -0.12 -2.06 3.86 -88.35 -0.34 -2.40 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.13 2.30 5.45 -3.91 -0.02 2.28 16 15 N -0.59 -10.22 2.94 -174.19 -0.51 -10.73 16 16 C 0.56 9.72 7.22 -12.45 -0.09 9.63 16 17 O -0.55 -11.13 16.48 5.29 0.09 -11.04 16 18 C -0.10 -1.42 5.07 -104.94 -0.53 -1.95 16 19 C -0.11 -1.51 7.26 -39.56 -0.29 -1.80 16 20 C -0.08 -0.90 10.03 -39.69 -0.40 -1.30 16 21 C -0.09 -1.12 6.37 -105.04 -0.67 -1.78 16 22 C -0.21 -1.92 11.08 -37.70 -0.42 -2.34 16 23 C 0.05 0.39 11.81 -16.78 -0.20 0.19 16 24 N -0.59 -4.98 6.06 -10.69 -0.06 -5.05 16 25 H 0.42 2.28 8.96 -40.82 -0.37 1.91 16 26 C 0.09 1.01 7.26 -84.00 -0.61 0.40 16 27 C -0.08 -1.02 9.74 -39.03 -0.38 -1.40 16 28 C 0.10 1.70 5.36 -3.67 -0.02 1.68 16 29 C -0.13 -2.19 5.19 -27.62 -0.14 -2.34 16 30 C 0.17 3.35 2.86 -68.32 -0.20 3.15 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.05 1.21 6.99 -51.93 -0.36 0.84 16 34 H 0.04 1.10 7.56 -51.93 -0.39 0.71 16 35 H 0.06 1.04 7.97 -51.93 -0.41 0.62 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.63 6.80 -51.93 -0.35 1.28 16 38 H 0.08 1.43 7.01 -51.93 -0.36 1.07 16 39 H 0.13 1.71 7.00 -52.49 -0.37 1.35 16 40 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 41 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 42 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 44 H 0.09 1.23 4.41 -51.93 -0.23 1.01 16 45 H 0.09 1.73 7.48 -51.93 -0.39 1.34 16 46 H 0.08 1.33 7.01 -51.93 -0.36 0.96 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 364.82 15.07 5.50 5.50 Total: -1.00 -32.01 364.82 -11.12 -43.13 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.47 Total: 4.73 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -4.70 Total: -2.81 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.51 Total: -55.81 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.01 -11.12 -43.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036829726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.217 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds