Wall clock time and date at job start Tue Mar 31 2020 22:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99888 * 2 1 4 4 H 1.48496 * 109.47118 * 270.00191 * 3 2 1 5 5 H 1.48496 * 109.47313 * 30.00551 * 3 2 1 6 6 H 1.48504 * 109.46941 * 150.00268 * 3 2 1 7 7 C 1.38817 * 119.99587 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99371 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00183 * 359.97438 * 7 2 1 10 10 C 1.47430 * 126.05456 * 0.02562 * 9 7 2 11 11 C 1.54505 * 107.14811 * 181.59572 * 10 9 7 12 12 C 1.56014 * 102.62377 * 22.82628 * 11 10 9 13 13 H 1.08996 * 112.90032 * 202.90512 * 12 11 10 14 14 C 1.53217 * 106.36024 * 78.29344 * 12 11 10 15 15 N 1.46540 * 110.25125 * 202.96806 * 14 12 11 16 16 C 1.34768 * 121.01514 * 235.56743 * 15 14 12 17 17 O 1.21591 * 120.00110 * 356.23275 * 16 15 14 18 18 C 1.47584 * 120.00153 * 176.23359 * 16 15 14 19 19 C 1.40246 * 119.82847 * 50.29886 * 18 16 15 20 20 C 1.36192 * 120.37373 * 179.73656 * 19 18 16 21 21 C 1.39920 * 119.96349 * 0.52002 * 20 19 18 22 22 C 1.46250 * 133.83834 * 179.75818 * 21 20 19 23 23 C 1.34454 * 107.03311 * 180.02562 * 22 21 20 24 24 N 1.36561 * 109.97496 * 359.97438 * 23 22 21 25 25 H 0.97004 * 125.07049 * 179.97438 * 24 23 22 26 26 C 1.37821 * 109.86491 * 0.02562 * 24 23 22 27 27 C 1.38683 * 133.38002 * 180.02562 * 26 24 23 28 28 C 1.47147 * 117.96936 * 55.50013 * 15 14 12 29 29 C 1.53039 * 107.73631 * 302.66279 * 28 15 14 30 30 C 1.46461 * 126.05348 * 179.97438 * 9 7 2 31 31 H 1.09003 * 108.34701 * 269.14614 * 30 9 7 32 32 H 0.97003 * 119.99933 * 359.97438 * 1 2 3 33 33 H 1.08998 * 109.90500 * 300.97071 * 10 9 7 34 34 H 1.08996 * 109.90311 * 62.03426 * 10 9 7 35 35 H 1.08998 * 110.78240 * 141.11336 * 11 10 9 36 36 H 1.08997 * 110.77838 * 264.35603 * 11 10 9 37 37 H 1.08997 * 109.34682 * 323.15657 * 14 12 11 38 38 H 1.08998 * 109.34879 * 82.71319 * 14 12 11 39 39 H 1.08000 * 119.80813 * 0.02562 * 19 18 16 40 40 H 1.08006 * 120.01850 * 180.28139 * 20 19 18 41 41 H 1.08001 * 126.48464 * 359.97438 * 22 21 20 42 42 H 1.07995 * 125.01301 * 180.02562 * 23 22 21 43 43 H 1.08002 * 120.16296 * 359.94817 * 27 26 24 44 44 H 1.08995 * 109.81532 * 183.08750 * 28 15 14 45 45 H 1.09001 * 109.81246 * 62.24174 * 28 15 14 46 46 H 1.09001 * 109.14885 * 174.78947 * 29 28 15 47 47 H 1.09003 * 109.15550 * 293.94734 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1406 -2.5436 -0.0005 11 6 -0.4380 -4.0592 0.0406 12 6 0.8716 -4.6472 0.6515 13 1 1.0211 -5.6978 0.4029 14 6 0.7968 -4.3910 2.1603 15 7 2.1417 -4.3927 2.7423 16 6 2.4553 -5.2141 3.7636 17 8 1.5992 -5.9197 4.2613 18 6 3.8379 -5.2574 4.2780 19 6 4.4974 -4.0642 4.6073 20 6 5.7714 -4.0916 5.0880 21 6 6.4329 -5.3144 5.2451 22 6 7.7649 -5.6924 5.7162 23 6 7.8422 -7.0328 5.6451 24 7 6.6688 -7.5430 5.1679 25 1 6.4865 -8.4856 5.0289 26 6 5.7826 -6.5191 4.9119 27 6 4.4832 -6.4824 4.4285 28 6 3.1397 -3.4712 2.1765 29 6 3.2667 -3.7811 0.6832 30 6 1.9199 -3.7267 -0.0016 31 1 2.0442 -4.0461 -1.0363 32 1 -0.4850 0.8401 0.0004 33 1 -0.5652 -2.0582 0.8782 34 1 -0.5603 -2.1048 -0.9057 35 1 -1.2927 -4.2683 0.6839 36 1 -0.6078 -4.4473 -0.9637 37 1 0.3281 -3.4234 2.3395 38 1 0.1991 -5.1721 2.6300 39 1 3.9903 -3.1188 4.4834 40 1 6.2722 -3.1695 5.3440 41 1 8.5401 -5.0216 6.0560 42 1 8.7046 -7.6195 5.9250 43 1 3.9745 -7.3993 4.1696 44 1 4.1010 -3.6206 2.6680 45 1 2.8109 -2.4410 2.3135 46 1 3.9317 -3.0510 0.2219 47 1 3.6905 -4.7777 0.5596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036829726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:55 Heat of formation + Delta-G solvation = 45.642333 kcal Electronic energy + Delta-G solvation = -29958.183140 eV Core-core repulsion = 26106.394569 eV Total energy + Delta-G solvation = -3851.788571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.27742 -41.44464 -39.80634 -37.61975 -36.47845 -34.58519 -33.18578 -32.96565 -31.31219 -30.55814 -30.01653 -28.95826 -26.96139 -25.87736 -24.22312 -23.86944 -23.24821 -21.81769 -21.60659 -20.96618 -19.82817 -19.07695 -18.32291 -17.92765 -17.35794 -16.93624 -16.80068 -16.27568 -16.19271 -15.66265 -15.49105 -15.35919 -15.06897 -14.83608 -14.68576 -14.31511 -14.22314 -13.92498 -13.82303 -13.77265 -13.20195 -13.18033 -12.87561 -12.78721 -12.75412 -12.53926 -12.36360 -12.21039 -12.03817 -11.96927 -11.64851 -11.51821 -11.45970 -11.19174 -10.89863 -10.73428 -10.61674 -9.64396 -9.20141 -8.78100 -8.67642 -7.76546 -5.09566 -0.10529 0.47898 1.50254 1.50661 1.54599 1.58911 1.82704 2.01348 2.31936 2.55078 2.84913 3.42450 3.45176 3.61314 3.77683 3.84007 3.92884 3.97625 4.06450 4.17446 4.26294 4.27450 4.34868 4.36899 4.45010 4.56878 4.59658 4.70979 4.74022 4.77208 4.82006 4.91667 4.97519 5.01646 5.04653 5.11919 5.22843 5.25283 5.34338 5.39855 5.49512 5.52356 5.60540 5.69699 5.70750 5.79694 5.82905 6.11936 6.26749 6.42919 6.69898 7.06027 7.17377 7.86910 8.53976 9.35038 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014402 B = 0.003393 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.710531 B = 8250.269907 C = 9508.695321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.967 3.033 4 H -0.292 1.292 5 H -0.303 1.303 6 H -0.263 1.263 7 C -0.217 4.217 8 H 0.090 0.910 9 N -0.607 5.607 10 C 0.185 3.815 11 C -0.129 4.129 12 C -0.102 4.102 13 H 0.105 0.895 14 C 0.132 3.868 15 N -0.591 5.591 16 C 0.561 3.439 17 O -0.585 6.585 18 C -0.122 4.122 19 C -0.125 4.125 20 C -0.076 4.076 21 C -0.107 4.107 22 C -0.231 4.231 23 C 0.077 3.923 24 N -0.585 5.585 25 H 0.430 0.570 26 C 0.070 3.930 27 C -0.076 4.076 28 C 0.112 3.888 29 C -0.122 4.122 30 C 0.163 3.837 31 H 0.017 0.983 32 H 0.242 0.758 33 H 0.011 0.989 34 H 0.005 0.995 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.050 0.950 38 H 0.081 0.919 39 H 0.129 0.871 40 H 0.148 0.852 41 H 0.166 0.834 42 H 0.216 0.784 43 H 0.127 0.873 44 H 0.110 0.890 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.851 -16.041 9.691 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.797 3.203 4 H -0.219 1.219 5 H -0.230 1.230 6 H -0.187 1.187 7 C -0.346 4.346 8 H 0.108 0.892 9 N -0.333 5.333 10 C 0.060 3.940 11 C -0.168 4.168 12 C -0.122 4.122 13 H 0.123 0.877 14 C 0.010 3.990 15 N -0.321 5.321 16 C 0.351 3.649 17 O -0.467 6.467 18 C -0.126 4.126 19 C -0.145 4.145 20 C -0.095 4.095 21 C -0.112 4.112 22 C -0.256 4.256 23 C -0.050 4.050 24 N -0.189 5.189 25 H 0.270 0.730 26 C -0.038 4.038 27 C -0.097 4.097 28 C -0.010 4.010 29 C -0.161 4.161 30 C 0.056 3.944 31 H 0.034 0.966 32 H 0.051 0.949 33 H 0.029 0.971 34 H 0.023 0.977 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.146 0.854 40 H 0.166 0.834 41 H 0.184 0.816 42 H 0.232 0.768 43 H 0.145 0.855 44 H 0.128 0.872 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 16.373 -16.317 9.925 25.156 hybrid contribution -0.617 1.118 -0.438 1.350 sum 15.756 -15.198 9.488 23.859 Atomic orbital electron populations 1.70182 1.06303 1.24744 1.59181 1.25533 0.96362 1.00659 1.03599 0.85228 0.77992 0.79953 0.77156 1.21945 1.23032 1.18732 1.19350 0.91060 0.82980 1.41190 0.89204 1.44539 1.01830 1.00565 1.86340 1.20966 0.84263 0.91268 0.97498 1.23012 0.97028 0.95764 1.00994 1.22724 0.96424 0.99367 0.93721 0.87703 1.21383 0.83206 1.01373 0.93069 1.48013 1.13052 1.38215 1.32783 1.18632 0.88468 0.78663 0.79102 1.90720 1.51125 1.45046 1.59783 1.19304 0.93052 0.94765 1.05482 1.20792 0.95698 0.96633 1.01376 1.20409 0.93542 0.97463 0.98043 1.19784 0.96129 0.92418 1.02876 1.22067 0.96200 0.95559 1.11727 1.22600 0.89760 0.94733 0.97955 1.41881 1.11789 1.08615 1.56566 0.73041 1.18061 0.92171 0.89329 1.04207 1.19894 0.92072 0.96974 1.00801 1.22038 0.92373 0.92583 0.93958 1.21536 0.97451 1.02092 0.95057 1.20483 0.92500 0.85311 0.96062 0.96589 0.94909 0.97080 0.97700 0.90410 0.90691 0.93176 0.90102 0.85352 0.83385 0.81625 0.76763 0.85475 0.87212 0.92045 0.90896 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.93 10.38 21.65 0.22 -56.71 16 2 C -0.07 -3.82 5.49 84.86 0.47 -3.36 16 3 Si 0.97 44.87 29.55 68.60 2.03 46.90 16 4 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 7 C -0.22 -11.32 9.02 84.03 0.76 -10.56 16 8 H 0.09 4.39 6.69 -2.91 -0.02 4.37 16 9 N -0.61 -29.25 3.12 -674.18 -2.10 -31.35 16 10 C 0.19 8.99 4.64 86.71 0.40 9.40 16 11 C -0.13 -4.72 6.29 32.15 0.20 -4.52 16 12 C -0.10 -3.51 3.86 -9.32 -0.04 -3.55 16 13 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 14 C 0.13 4.86 5.45 86.44 0.47 5.33 16 15 N -0.59 -20.50 2.94 -823.29 -2.42 -22.92 16 16 C 0.56 19.59 7.22 86.71 0.63 20.22 16 17 O -0.58 -23.88 16.48 -4.00 -0.07 -23.95 16 18 C -0.12 -3.54 5.07 -20.07 -0.10 -3.64 16 19 C -0.13 -3.24 7.26 22.28 0.16 -3.08 16 20 C -0.08 -1.67 10.03 22.20 0.22 -1.45 16 21 C -0.11 -2.26 6.37 -20.14 -0.13 -2.39 16 22 C -0.23 -3.38 11.08 23.49 0.26 -3.12 16 23 C 0.08 0.76 11.81 83.09 0.98 1.74 16 24 N -0.58 -7.66 6.06 -187.72 -1.14 -8.79 16 25 H 0.43 3.10 8.96 -92.71 -0.83 2.27 16 26 C 0.07 1.48 7.26 38.96 0.28 1.76 16 27 C -0.08 -1.92 9.74 22.63 0.22 -1.70 16 28 C 0.11 3.70 5.36 86.27 0.46 4.16 16 29 C -0.12 -4.04 5.19 30.02 0.16 -3.88 16 30 C 0.16 6.27 2.86 44.76 0.13 6.40 16 31 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.24 14.26 8.31 -92.71 -0.77 13.49 16 33 H 0.01 0.61 6.99 -2.39 -0.02 0.59 16 34 H 0.00 0.26 7.56 -2.39 -0.02 0.25 16 35 H 0.08 2.59 7.97 -2.39 -0.02 2.57 16 36 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.05 2.14 6.80 -2.39 -0.02 2.12 16 38 H 0.08 2.94 7.01 -2.39 -0.02 2.93 16 39 H 0.13 3.33 7.00 -2.91 -0.02 3.31 16 40 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 41 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 42 H 0.22 0.12 8.06 -2.91 -0.02 0.10 16 43 H 0.13 3.04 8.06 -2.91 -0.02 3.01 16 44 H 0.11 3.10 4.41 -2.39 -0.01 3.09 16 45 H 0.06 2.39 7.48 -2.39 -0.02 2.38 16 46 H 0.07 2.45 7.01 -2.39 -0.02 2.44 16 47 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -72.97 364.82 2.24 -70.73 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.18 Total: 18.33 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 5.53 Total: 7.77 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -5.44 Total: -119.77 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.07 Total: -23.95 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -72.97 2.24 -70.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036829726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.372 kcal (2) G-P(sol) polarization free energy of solvation -72.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds