Wall clock time and date at job start Tue Mar 31 2020 22:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99847 * 2 1 4 4 H 1.48497 * 109.46973 * 270.00178 * 3 2 1 5 5 H 1.48499 * 109.47165 * 30.00248 * 3 2 1 6 6 H 1.48501 * 109.46929 * 149.99834 * 3 2 1 7 7 C 1.38810 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00203 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.47215 * 125.88820 * 359.97438 * 9 7 2 11 11 C 1.54726 * 107.24225 * 183.75544 * 10 9 7 12 12 C 1.54204 * 102.06368 * 21.51596 * 11 10 9 13 13 H 1.09000 * 109.50534 * 78.48988 * 12 11 10 14 14 C 1.50942 * 112.77037 * 199.86109 * 12 11 10 15 15 N 1.45823 * 111.63610 * 70.85382 * 14 12 11 16 16 C 1.34784 * 121.14874 * 231.86349 * 15 14 12 17 17 O 1.21593 * 119.99614 * 173.33390 * 16 15 14 18 18 C 1.47499 * 119.99670 * 353.33590 * 16 15 14 19 19 C 1.41196 * 126.37162 * 332.76707 * 18 16 15 20 20 C 1.38001 * 106.85891 * 179.84406 * 19 18 16 21 21 C 1.41390 * 131.98261 * 180.11252 * 20 19 18 22 22 C 1.35742 * 119.32826 * 180.34287 * 21 20 19 23 23 C 1.40823 * 119.72546 * 359.97438 * 22 21 20 24 24 C 1.34540 * 120.57975 * 0.02562 * 23 22 21 25 25 N 1.37435 * 120.74188 * 359.97438 * 24 23 22 26 26 C 1.35132 * 131.28007 * 180.02562 * 25 24 23 27 27 C 1.47210 * 117.49118 * 51.49414 * 15 14 12 28 28 C 1.52757 * 107.75586 * 302.28434 * 27 15 14 29 29 C 1.48639 * 125.89116 * 179.97438 * 9 7 2 30 30 H 1.09002 * 112.00612 * 31.84577 * 29 9 7 31 31 H 0.97001 * 120.00288 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.88901 * 303.16025 * 10 9 7 33 33 H 1.08997 * 109.88999 * 64.19123 * 10 9 7 34 34 H 1.09000 * 110.91371 * 263.32764 * 11 10 9 35 35 H 1.08994 * 110.91641 * 139.70932 * 11 10 9 36 36 H 1.09007 * 109.13840 * 190.52011 * 14 12 11 37 37 H 1.08992 * 109.14696 * 309.66119 * 14 12 11 38 38 H 1.07994 * 126.57082 * 359.97438 * 19 18 16 39 39 H 1.08001 * 120.33539 * 0.32150 * 21 20 19 40 40 H 1.08001 * 120.13394 * 180.02562 * 22 21 20 41 41 H 1.07997 * 119.71128 * 180.02562 * 23 22 21 42 42 H 1.08000 * 119.62944 * 180.02562 * 24 23 22 43 43 H 1.07994 * 125.61557 * 0.02562 * 26 25 24 44 44 H 1.09004 * 109.80150 * 182.72271 * 27 15 14 45 45 H 1.08991 * 109.80594 * 61.85275 * 27 15 14 46 46 H 1.09001 * 109.20609 * 297.54329 * 28 27 15 47 47 H 1.08997 * 109.17194 * 178.21593 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1388 -2.5391 0.0005 11 6 -0.4437 -4.0529 0.0973 12 6 0.8644 -4.6075 0.6966 13 1 0.8834 -4.4155 1.7694 14 6 1.0319 -6.0893 0.4631 15 7 1.3103 -6.3847 -0.9375 16 6 0.5848 -7.2963 -1.6153 17 8 0.7530 -7.4399 -2.8110 18 6 -0.4131 -8.1193 -0.9066 19 6 -0.3824 -8.4826 0.4574 20 6 -1.5065 -9.2476 0.6933 21 6 -1.9946 -9.8762 1.8619 22 6 -3.1496 -10.5868 1.8017 23 6 -3.8444 -10.6879 0.5810 24 6 -3.3733 -10.0868 -0.5265 25 7 -2.2061 -9.3620 -0.4901 26 6 -1.5483 -8.6821 -1.4550 27 6 2.4068 -5.6445 -1.5832 28 6 2.0947 -4.1537 -1.4660 29 6 1.9328 -3.7447 0.0005 30 1 2.8832 -3.7669 0.5338 31 1 -0.4850 0.8400 0.0004 32 1 -0.5652 -2.0194 0.8586 33 1 -0.5534 -2.1332 -0.9222 34 1 -0.6296 -4.4763 -0.8898 35 1 -1.2861 -4.2383 0.7636 36 1 1.8668 -6.4533 1.0620 37 1 0.1218 -6.6046 0.7697 38 1 0.3745 -8.2118 1.1786 39 1 -1.4538 -9.7922 2.7930 40 1 -3.5345 -11.0719 2.6866 41 1 -4.7636 -11.2530 0.5335 42 1 -3.9188 -10.1740 -1.4546 43 1 -1.8594 -8.5936 -2.4854 44 1 2.4738 -5.9262 -2.6341 45 1 3.3480 -5.8654 -1.0802 46 1 1.1709 -3.9374 -2.0025 47 1 2.9094 -3.5815 -1.9098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036833301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:20 Heat of formation + Delta-G solvation = 86.495002 kcal Electronic energy + Delta-G solvation = -29718.644837 eV Core-core repulsion = 25868.627771 eV Total energy + Delta-G solvation = -3850.017067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.43523 -40.04061 -38.10751 -36.59727 -35.14132 -33.40553 -32.41254 -31.71200 -30.15028 -29.24176 -28.26074 -27.89447 -25.42109 -24.19662 -23.57115 -22.93545 -21.86247 -21.74861 -19.97975 -19.62002 -18.22355 -17.67531 -16.88688 -16.82054 -16.48328 -15.83177 -15.64321 -15.12915 -14.87874 -14.71542 -14.64678 -14.28327 -14.10654 -13.72207 -13.37429 -12.98074 -12.81373 -12.68524 -12.49259 -12.13594 -11.94323 -11.88936 -11.60375 -11.53110 -11.41964 -11.26188 -10.98297 -10.78172 -10.68177 -10.58774 -10.06525 -9.89092 -9.84142 -9.62902 -9.55529 -9.47205 -8.74444 -8.57216 -8.27362 -7.58741 -6.79774 -5.66322 -2.99494 0.52002 1.13468 2.07803 2.41703 3.22540 3.24835 3.42373 3.47176 3.49053 3.55737 4.23283 4.48122 4.52052 4.55588 4.66457 4.82037 5.01781 5.02471 5.17498 5.26509 5.37622 5.41067 5.51105 5.52438 5.59471 5.66135 5.67559 5.75821 5.85427 5.92433 5.96514 6.01664 6.03070 6.06960 6.16596 6.27967 6.44066 6.45707 6.51676 6.60752 6.63373 6.73072 6.82493 7.01260 7.02247 7.16182 7.60604 7.68870 7.71063 7.87799 8.29158 8.41044 9.25767 9.85859 10.54141 11.45006 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019485 B = 0.002792 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.679077 B =10024.643724 C =10684.890617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.179 3.821 11 C -0.135 4.135 12 C -0.113 4.113 13 H 0.080 0.920 14 C 0.106 3.894 15 N -0.593 5.593 16 C 0.589 3.411 17 O -0.551 6.551 18 C -0.159 4.159 19 C -0.166 4.166 20 C 0.027 3.973 21 C -0.074 4.074 22 C -0.136 4.136 23 C -0.138 4.138 24 C 0.044 3.956 25 N -0.342 5.342 26 C 0.015 3.985 27 C 0.114 3.886 28 C -0.142 4.142 29 C 0.166 3.834 30 H 0.059 0.941 31 H 0.251 0.749 32 H 0.050 0.950 33 H 0.034 0.966 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.159 0.841 39 H 0.143 0.857 40 H 0.133 0.867 41 H 0.144 0.856 42 H 0.161 0.839 43 H 0.179 0.821 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.873 -23.282 3.700 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.326 5.326 10 C 0.055 3.945 11 C -0.173 4.173 12 C -0.133 4.133 13 H 0.098 0.902 14 C -0.018 4.018 15 N -0.325 5.325 16 C 0.378 3.622 17 O -0.430 6.430 18 C -0.166 4.166 19 C -0.190 4.190 20 C -0.077 4.077 21 C -0.093 4.093 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.075 4.075 25 N -0.006 5.006 26 C -0.119 4.119 27 C -0.009 4.009 28 C -0.183 4.183 29 C 0.058 3.942 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.176 0.824 39 H 0.161 0.839 40 H 0.151 0.849 41 H 0.162 0.838 42 H 0.178 0.822 43 H 0.196 0.804 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.048 -23.173 2.991 24.135 hybrid contribution 0.282 1.068 -0.017 1.105 sum -5.766 -22.105 2.973 23.037 Atomic orbital electron populations 1.69968 1.04850 1.24861 1.57282 1.24784 0.95679 0.97558 1.02550 0.86149 0.78554 0.83728 0.77511 1.21724 1.21795 1.20760 1.19044 0.90375 0.82435 1.43377 0.90533 1.44938 1.01451 0.99429 1.86759 1.21179 0.84278 0.88373 1.00684 1.22742 0.95587 0.99604 0.99405 1.21879 0.97925 0.92781 1.00732 0.90196 1.21500 1.02113 0.96810 0.81357 1.47642 1.33587 1.38725 1.12517 1.17372 0.79831 0.79204 0.85793 1.90747 1.68288 1.69616 1.14369 1.19538 0.97760 1.04894 0.94442 1.21405 0.98780 1.03303 0.95503 1.18832 0.96022 1.06235 0.86636 1.20676 0.96352 0.96025 0.96239 1.20928 0.95786 1.00862 0.98066 1.20712 1.01475 1.01605 0.92023 1.21678 0.87692 0.96847 1.01257 1.41307 1.16369 1.33288 1.09597 1.21961 0.94925 1.00710 0.94285 1.21703 0.88079 0.92328 0.98773 1.22474 1.02576 0.92800 1.00420 1.21171 0.94554 0.86025 0.92436 0.92283 0.93882 0.93230 0.94812 0.92714 0.92553 0.92159 0.88299 0.82357 0.83912 0.84929 0.83793 0.82165 0.80357 0.89647 0.91622 0.91541 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.32 10.35 55.49 0.57 -26.74 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.22 -6.17 10.31 -15.06 -0.16 -6.33 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -15.04 2.90 -161.79 -0.47 -15.51 16 10 C 0.18 4.40 5.12 -2.74 -0.01 4.38 16 11 C -0.14 -2.59 5.90 -25.19 -0.15 -2.73 16 12 C -0.11 -1.92 2.89 -90.53 -0.26 -2.18 16 13 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 14 C 0.11 1.44 4.52 -5.44 -0.02 1.42 16 15 N -0.59 -9.10 2.85 -176.28 -0.50 -9.60 16 16 C 0.59 9.63 7.65 -12.48 -0.10 9.53 16 17 O -0.55 -10.62 16.50 5.28 0.09 -10.53 16 18 C -0.16 -2.20 5.59 -105.07 -0.59 -2.79 16 19 C -0.17 -1.94 8.55 -38.55 -0.33 -2.27 16 20 C 0.03 0.29 6.70 -84.00 -0.56 -0.27 16 21 C -0.07 -0.62 10.11 -39.28 -0.40 -1.02 16 22 C -0.14 -0.94 10.07 -39.50 -0.40 -1.34 16 23 C -0.14 -0.90 9.97 -39.91 -0.40 -1.29 16 24 C 0.04 0.34 10.89 -16.35 -0.18 0.16 16 25 N -0.34 -3.68 2.92 -60.42 -0.18 -3.86 16 26 C 0.01 0.18 11.47 -16.16 -0.19 -0.01 16 27 C 0.11 1.78 6.45 -3.78 -0.02 1.76 16 28 C -0.14 -2.64 5.25 -26.80 -0.14 -2.78 16 29 C 0.17 3.27 3.59 -66.20 -0.24 3.03 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.05 1.35 7.24 -51.93 -0.38 0.97 16 33 H 0.03 0.93 7.66 -51.93 -0.40 0.53 16 34 H 0.05 1.08 7.48 -51.93 -0.39 0.69 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 1.25 4.16 -51.93 -0.22 1.04 16 38 H 0.16 1.57 6.37 -52.49 -0.33 1.24 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 41 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 42 H 0.16 0.79 8.06 -52.49 -0.42 0.36 16 43 H 0.18 1.92 8.06 -52.49 -0.42 1.50 16 44 H 0.09 1.40 7.08 -51.93 -0.37 1.03 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.07 1.42 6.97 -51.93 -0.36 1.05 16 47 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 369.13 15.07 5.56 5.56 Total: -1.00 -34.08 369.13 -10.82 -44.90 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.64 Total: 1.63 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -4.23 Total: -3.09 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.57 Total: -55.71 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.08 -10.82 -44.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036833301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.395 kcal (2) G-P(sol) polarization free energy of solvation -34.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds