Wall clock time and date at job start Tue Mar 31 2020 22:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99847 * 2 1 4 4 H 1.48497 * 109.46973 * 270.00178 * 3 2 1 5 5 H 1.48499 * 109.47165 * 30.00248 * 3 2 1 6 6 H 1.48501 * 109.46929 * 149.99834 * 3 2 1 7 7 C 1.38810 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00203 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.47215 * 125.88820 * 359.97438 * 9 7 2 11 11 C 1.54726 * 107.24225 * 183.75544 * 10 9 7 12 12 C 1.54204 * 102.06368 * 21.51596 * 11 10 9 13 13 H 1.09000 * 109.50534 * 78.48988 * 12 11 10 14 14 C 1.50942 * 112.77037 * 199.86109 * 12 11 10 15 15 N 1.45823 * 111.63610 * 70.85382 * 14 12 11 16 16 C 1.34784 * 121.14874 * 231.86349 * 15 14 12 17 17 O 1.21593 * 119.99614 * 173.33390 * 16 15 14 18 18 C 1.47499 * 119.99670 * 353.33590 * 16 15 14 19 19 C 1.41196 * 126.37162 * 332.76707 * 18 16 15 20 20 C 1.38001 * 106.85891 * 179.84406 * 19 18 16 21 21 C 1.41390 * 131.98261 * 180.11252 * 20 19 18 22 22 C 1.35742 * 119.32826 * 180.34287 * 21 20 19 23 23 C 1.40823 * 119.72546 * 359.97438 * 22 21 20 24 24 C 1.34540 * 120.57975 * 0.02562 * 23 22 21 25 25 N 1.37435 * 120.74188 * 359.97438 * 24 23 22 26 26 C 1.35132 * 131.28007 * 180.02562 * 25 24 23 27 27 C 1.47210 * 117.49118 * 51.49414 * 15 14 12 28 28 C 1.52757 * 107.75586 * 302.28434 * 27 15 14 29 29 C 1.48639 * 125.89116 * 179.97438 * 9 7 2 30 30 H 1.09002 * 112.00612 * 31.84577 * 29 9 7 31 31 H 0.97001 * 120.00288 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.88901 * 303.16025 * 10 9 7 33 33 H 1.08997 * 109.88999 * 64.19123 * 10 9 7 34 34 H 1.09000 * 110.91371 * 263.32764 * 11 10 9 35 35 H 1.08994 * 110.91641 * 139.70932 * 11 10 9 36 36 H 1.09007 * 109.13840 * 190.52011 * 14 12 11 37 37 H 1.08992 * 109.14696 * 309.66119 * 14 12 11 38 38 H 1.07994 * 126.57082 * 359.97438 * 19 18 16 39 39 H 1.08001 * 120.33539 * 0.32150 * 21 20 19 40 40 H 1.08001 * 120.13394 * 180.02562 * 22 21 20 41 41 H 1.07997 * 119.71128 * 180.02562 * 23 22 21 42 42 H 1.08000 * 119.62944 * 180.02562 * 24 23 22 43 43 H 1.07994 * 125.61557 * 0.02562 * 26 25 24 44 44 H 1.09004 * 109.80150 * 182.72271 * 27 15 14 45 45 H 1.08991 * 109.80594 * 61.85275 * 27 15 14 46 46 H 1.09001 * 109.20609 * 297.54329 * 28 27 15 47 47 H 1.08997 * 109.17194 * 178.21593 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1388 -2.5391 0.0005 11 6 -0.4437 -4.0529 0.0973 12 6 0.8644 -4.6075 0.6966 13 1 0.8834 -4.4155 1.7694 14 6 1.0319 -6.0893 0.4631 15 7 1.3103 -6.3847 -0.9375 16 6 0.5848 -7.2963 -1.6153 17 8 0.7530 -7.4399 -2.8110 18 6 -0.4131 -8.1193 -0.9066 19 6 -0.3824 -8.4826 0.4574 20 6 -1.5065 -9.2476 0.6933 21 6 -1.9946 -9.8762 1.8619 22 6 -3.1496 -10.5868 1.8017 23 6 -3.8444 -10.6879 0.5810 24 6 -3.3733 -10.0868 -0.5265 25 7 -2.2061 -9.3620 -0.4901 26 6 -1.5483 -8.6821 -1.4550 27 6 2.4068 -5.6445 -1.5832 28 6 2.0947 -4.1537 -1.4660 29 6 1.9328 -3.7447 0.0005 30 1 2.8832 -3.7669 0.5338 31 1 -0.4850 0.8400 0.0004 32 1 -0.5652 -2.0194 0.8586 33 1 -0.5534 -2.1332 -0.9222 34 1 -0.6296 -4.4763 -0.8898 35 1 -1.2861 -4.2383 0.7636 36 1 1.8668 -6.4533 1.0620 37 1 0.1218 -6.6046 0.7697 38 1 0.3745 -8.2118 1.1786 39 1 -1.4538 -9.7922 2.7930 40 1 -3.5345 -11.0719 2.6866 41 1 -4.7636 -11.2530 0.5335 42 1 -3.9188 -10.1740 -1.4546 43 1 -1.8594 -8.5936 -2.4854 44 1 2.4738 -5.9262 -2.6341 45 1 3.3480 -5.8654 -1.0802 46 1 1.1709 -3.9374 -2.0025 47 1 2.9094 -3.5815 -1.9098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036833301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:19 Heat of formation + Delta-G solvation = 67.687045 kcal Electronic energy + Delta-G solvation = -29719.460412 eV Core-core repulsion = 25868.627771 eV Total energy + Delta-G solvation = -3850.832641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.19837 -41.35599 -39.56153 -37.30151 -36.68073 -34.36190 -34.11885 -33.02822 -31.40890 -30.63870 -29.82555 -28.68277 -26.94405 -25.63326 -24.82159 -23.96637 -22.89947 -22.65903 -21.86213 -20.85469 -19.47682 -18.81244 -18.45029 -17.81427 -17.41749 -16.80174 -16.74319 -16.61451 -16.08248 -15.94906 -15.83744 -15.54829 -15.21351 -15.04160 -14.58852 -14.44937 -14.13807 -13.95852 -13.75485 -13.55125 -13.22908 -13.04807 -12.90300 -12.78381 -12.69371 -12.59375 -12.41342 -12.37251 -12.12933 -12.00704 -11.65812 -11.50319 -11.42344 -11.25668 -11.15915 -10.82791 -10.69664 -9.71477 -9.42336 -8.86844 -8.28837 -7.81431 -5.16124 -0.11385 0.42762 1.14083 1.45330 1.47338 1.55682 1.65999 2.11548 2.43459 2.51130 2.64386 3.36094 3.51870 3.60793 3.69437 3.81887 3.94042 4.01279 4.04860 4.13006 4.21020 4.27012 4.30214 4.34794 4.44700 4.46661 4.54869 4.61930 4.66489 4.78939 4.83734 4.90120 4.92309 4.92476 4.96704 5.06033 5.18997 5.29095 5.34084 5.37127 5.45999 5.47027 5.56633 5.62600 5.67830 5.74676 5.79792 5.95315 6.21115 6.31052 6.50895 7.11958 7.19160 7.79807 8.47217 9.29002 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019485 B = 0.002792 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.679077 B =10024.643724 C =10684.890617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.072 4.072 3 Si 0.976 3.024 4 H -0.292 1.292 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.230 4.230 8 H 0.085 0.915 9 N -0.621 5.621 10 C 0.190 3.810 11 C -0.119 4.119 12 C -0.099 4.099 13 H 0.092 0.908 14 C 0.111 3.889 15 N -0.594 5.594 16 C 0.586 3.414 17 O -0.592 6.592 18 C -0.184 4.184 19 C -0.178 4.178 20 C 0.022 3.978 21 C -0.093 4.093 22 C -0.127 4.127 23 C -0.129 4.129 24 C 0.019 3.981 25 N -0.343 5.343 26 C -0.004 4.004 27 C 0.122 3.878 28 C -0.129 4.129 29 C 0.160 3.840 30 H 0.074 0.926 31 H 0.243 0.757 32 H 0.016 0.984 33 H -0.014 1.014 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.176 0.824 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.178 0.822 42 H 0.183 0.817 43 H 0.181 0.819 44 H 0.075 0.925 45 H 0.098 0.902 46 H 0.029 0.971 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.827 -26.241 6.105 27.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.265 4.265 3 Si 0.805 3.195 4 H -0.219 1.219 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.359 4.359 8 H 0.103 0.897 9 N -0.345 5.345 10 C 0.065 3.935 11 C -0.157 4.157 12 C -0.119 4.119 13 H 0.110 0.890 14 C -0.011 4.011 15 N -0.324 5.324 16 C 0.377 3.623 17 O -0.475 6.475 18 C -0.192 4.192 19 C -0.201 4.201 20 C -0.083 4.083 21 C -0.112 4.112 22 C -0.147 4.147 23 C -0.149 4.149 24 C -0.099 4.099 25 N -0.006 5.006 26 C -0.138 4.138 27 C 0.000 4.000 28 C -0.170 4.170 29 C 0.054 3.946 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.035 0.965 33 H 0.004 0.996 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.134 0.866 38 H 0.193 0.807 39 H 0.183 0.817 40 H 0.181 0.819 41 H 0.196 0.804 42 H 0.200 0.800 43 H 0.198 0.802 44 H 0.093 0.907 45 H 0.116 0.884 46 H 0.048 0.952 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.979 -26.174 5.417 27.389 hybrid contribution 0.139 1.866 -0.741 2.012 sum -5.839 -24.308 4.676 25.433 Atomic orbital electron populations 1.70205 1.06373 1.24920 1.58984 1.25634 0.96530 1.00995 1.03310 0.85107 0.77818 0.79426 0.77184 1.21905 1.22354 1.18959 1.19474 0.91028 0.83648 1.41785 0.89695 1.45237 1.01856 1.00957 1.86466 1.20868 0.84250 0.91574 0.96798 1.22546 0.97891 0.95502 0.99771 1.21834 0.94775 0.94542 1.00723 0.89018 1.21619 1.04612 0.94136 0.80774 1.47707 1.33250 1.38337 1.13152 1.17807 0.79821 0.79275 0.85403 1.90712 1.69533 1.71001 1.16210 1.19396 0.98052 1.06091 0.95654 1.21539 0.99806 1.04056 0.94697 1.19261 0.95765 1.05845 0.87475 1.21019 0.97413 0.96550 0.96189 1.21425 0.94815 0.99262 0.99241 1.21245 1.02105 1.00248 0.91264 1.22300 0.87239 0.97138 1.03187 1.41469 1.16977 1.32941 1.09191 1.21992 0.95345 1.01623 0.94867 1.21591 0.89585 0.89857 0.99006 1.22252 1.00413 0.95195 0.99115 1.21473 0.95835 0.83978 0.93335 0.90818 0.94748 0.96536 0.99571 0.93595 0.90498 0.88495 0.86631 0.80680 0.81727 0.81930 0.80439 0.79960 0.80211 0.90654 0.88416 0.95232 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.27 10.35 21.65 0.22 -59.04 16 2 C -0.07 -4.20 5.49 84.86 0.47 -3.74 16 3 Si 0.98 46.77 29.55 68.60 2.03 48.80 16 4 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.23 -12.92 10.31 84.03 0.87 -12.05 16 8 H 0.09 4.51 7.83 -2.91 -0.02 4.48 16 9 N -0.62 -31.80 2.90 -665.78 -1.93 -33.73 16 10 C 0.19 9.80 5.12 86.83 0.44 10.24 16 11 C -0.12 -4.59 5.90 31.59 0.19 -4.40 16 12 C -0.10 -3.18 2.89 -10.73 -0.03 -3.21 16 13 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 14 C 0.11 2.73 4.52 85.84 0.39 3.12 16 15 N -0.59 -17.55 2.85 -829.89 -2.36 -19.91 16 16 C 0.59 19.19 7.65 86.68 0.66 19.85 16 17 O -0.59 -23.57 16.50 -4.01 -0.07 -23.64 16 18 C -0.18 -5.01 5.59 -20.15 -0.11 -5.13 16 19 C -0.18 -3.82 8.55 22.94 0.20 -3.62 16 20 C 0.02 0.42 6.70 38.90 0.26 0.69 16 21 C -0.09 -1.23 10.11 22.47 0.23 -1.01 16 22 C -0.13 -1.21 10.07 22.32 0.22 -0.99 16 23 C -0.13 -1.16 9.97 22.06 0.22 -0.94 16 24 C 0.02 0.24 10.89 82.97 0.90 1.15 16 25 N -0.34 -6.87 2.92 -345.06 -1.01 -7.88 16 26 C 0.00 -0.11 11.47 84.14 0.97 0.86 16 27 C 0.12 3.73 6.45 86.16 0.56 4.28 16 28 C -0.13 -4.86 5.25 30.55 0.16 -4.70 16 29 C 0.16 6.20 3.59 44.94 0.16 6.36 16 30 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.24 14.77 8.31 -92.71 -0.77 14.00 16 32 H 0.02 0.94 7.24 -2.39 -0.02 0.92 16 33 H -0.01 -0.84 7.66 -2.39 -0.02 -0.85 16 34 H 0.05 1.85 7.48 -2.39 -0.02 1.84 16 35 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.12 2.59 4.16 -2.39 -0.01 2.58 16 38 H 0.18 2.92 6.37 -2.91 -0.02 2.90 16 39 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 40 H 0.16 0.58 8.06 -2.91 -0.02 0.55 16 41 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 42 H 0.18 1.38 8.06 -2.91 -0.02 1.35 16 43 H 0.18 4.07 8.06 -2.91 -0.02 4.05 16 44 H 0.07 2.48 7.08 -2.39 -0.02 2.47 16 45 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.03 1.31 6.97 -2.39 -0.02 1.29 16 47 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -79.52 369.13 4.61 -74.91 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.98 Total: 13.74 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: 6.74 Total: 6.75 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -5.08 Total: -120.57 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.07 Total: -23.64 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -79.52 4.61 -74.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036833301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.602 kcal (2) G-P(sol) polarization free energy of solvation -79.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds