Wall clock time and date at job start Tue Mar 31 2020 22:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99977 * 2 1 4 4 H 1.48496 * 109.47387 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46901 * 299.99890 * 3 2 1 6 6 H 1.48502 * 109.47023 * 59.99532 * 3 2 1 7 7 C 1.38809 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99794 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00180 * 0.02562 * 7 2 1 10 10 C 1.48160 * 126.40141 * 359.97438 * 9 7 2 11 11 C 1.55293 * 107.21069 * 184.81962 * 10 9 7 12 12 C 1.54262 * 101.60739 * 22.54298 * 11 10 9 13 13 H 1.08999 * 112.01948 * 79.22494 * 12 11 10 14 14 C 1.52207 * 114.70279 * 207.20210 * 12 11 10 15 15 N 1.47717 * 106.38303 * 169.56188 * 14 12 11 16 16 C 1.34778 * 119.67979 * 127.94692 * 15 14 12 17 17 O 1.21592 * 119.99928 * 176.43233 * 16 15 14 18 18 C 1.47505 * 120.00217 * 356.43034 * 16 15 14 19 19 C 1.41195 * 126.37073 * 223.82904 * 18 16 15 20 20 C 1.37998 * 106.86443 * 179.97438 * 19 18 16 21 21 C 1.41379 * 131.98309 * 179.97438 * 20 19 18 22 22 C 1.35743 * 119.33053 * 180.02562 * 21 20 19 23 23 C 1.40818 * 119.71974 * 359.97438 * 22 21 20 24 24 C 1.34542 * 120.58705 * 0.02562 * 23 22 21 25 25 N 1.37438 * 120.74065 * 359.97438 * 24 23 22 26 26 C 1.35122 * 131.28638 * 180.34240 * 25 24 23 27 27 C 1.46589 * 120.63589 * 307.97446 * 15 14 12 28 28 C 1.53958 * 110.58130 * 47.79643 * 27 15 14 29 29 C 1.45462 * 126.40858 * 179.97438 * 9 7 2 30 30 H 1.09005 * 109.27124 * 265.55913 * 29 9 7 31 31 H 0.96999 * 120.00108 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.91687 * 304.26436 * 10 9 7 33 33 H 1.08995 * 109.92364 * 65.37271 * 10 9 7 34 34 H 1.09006 * 110.95465 * 140.71506 * 11 10 9 35 35 H 1.08997 * 110.96014 * 264.44492 * 11 10 9 36 36 H 1.08998 * 110.05449 * 50.34796 * 14 12 11 37 37 H 1.08997 * 110.06176 * 288.78565 * 14 12 11 38 38 H 1.08000 * 126.56738 * 0.02562 * 19 18 16 39 39 H 1.07994 * 120.33739 * 0.02900 * 21 20 19 40 40 H 1.08003 * 120.13822 * 180.02562 * 22 21 20 41 41 H 1.08007 * 119.70883 * 179.97438 * 23 22 21 42 42 H 1.07996 * 119.62890 * 180.02562 * 24 23 22 43 43 H 1.08000 * 125.61819 * 359.97438 * 26 25 24 44 44 H 1.08999 * 109.25234 * 287.50802 * 27 15 14 45 45 H 1.09005 * 109.22840 * 168.05885 * 27 15 14 46 46 H 1.08995 * 109.88317 * 189.49463 * 28 27 15 47 47 H 1.08990 * 109.94055 * 68.43980 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1467 -2.5533 0.0005 11 6 -0.4384 -4.0735 0.1252 12 6 0.8685 -4.5892 0.7620 13 1 0.9015 -4.4024 1.8354 14 6 1.2010 -6.0403 0.4454 15 7 2.5827 -6.2638 0.9178 16 6 2.8490 -7.3029 1.7339 17 8 3.9939 -7.5308 2.0740 18 6 1.7517 -8.1635 2.2144 19 6 1.5754 -8.6379 3.5325 20 6 0.4264 -9.4021 3.5327 21 6 -0.2326 -10.1187 4.5579 22 6 -1.3714 -10.7981 4.2679 23 6 -1.8800 -10.7800 2.9549 24 6 -1.2469 -10.0956 1.9849 25 7 -0.0925 -9.4003 2.2545 26 6 0.7018 -8.6489 1.4606 27 6 3.6666 -5.3661 0.5081 28 6 3.2478 -3.8953 0.6862 29 6 1.9079 -3.7211 0.0005 30 1 1.9789 -4.0826 -1.0253 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5800 -2.0213 0.8475 33 1 -0.5634 -2.1704 -0.9310 34 1 -1.2916 -4.2544 0.7791 35 1 -0.5990 -4.5214 -0.8555 36 1 1.1409 -6.2116 -0.6294 37 1 0.5142 -6.7044 0.9701 38 1 2.2165 -8.4397 4.3788 39 1 0.1660 -10.1255 5.5616 40 1 -1.8857 -11.3496 5.0411 41 1 -2.7859 -11.3210 2.7243 42 1 -1.6509 -10.0919 0.9833 43 1 0.5435 -8.4618 0.4088 44 1 3.9066 -5.5472 -0.5397 45 1 4.5477 -5.5653 1.1182 46 1 3.9877 -3.2408 0.2257 47 1 3.1548 -3.6612 1.7466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036833302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:23 Heat of formation + Delta-G solvation = 83.735166 kcal Electronic energy + Delta-G solvation = -29507.895375 eV Core-core repulsion = 25657.758633 eV Total energy + Delta-G solvation = -3850.136742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.46019 -40.03643 -38.19278 -36.64687 -35.20383 -33.30009 -32.54872 -32.07256 -30.18875 -29.41096 -28.26136 -27.79500 -25.29112 -24.33061 -23.56040 -22.52491 -22.17380 -21.41264 -20.07968 -19.73754 -18.81394 -17.75610 -17.32138 -16.54591 -16.20968 -15.92107 -15.55013 -15.22041 -15.02507 -14.85288 -14.66012 -14.29192 -14.04410 -13.75124 -13.39511 -13.14015 -12.93858 -12.62247 -12.51868 -12.32104 -12.13200 -11.89953 -11.73832 -11.52415 -11.45584 -11.35037 -10.82943 -10.76309 -10.70170 -10.60435 -10.14079 -10.09311 -9.86757 -9.83215 -9.61800 -9.43521 -8.72131 -8.62434 -8.41180 -7.60254 -6.83127 -5.71467 -3.04222 0.52935 1.10261 2.12943 2.42473 3.01138 3.23782 3.39872 3.41298 3.46193 3.48093 4.20664 4.45644 4.49952 4.52199 4.61110 4.80756 4.90057 4.98607 5.07661 5.22558 5.28761 5.36744 5.46391 5.49769 5.54676 5.61046 5.63735 5.68886 5.82973 5.85545 5.91209 5.97527 5.99912 6.08823 6.13397 6.22164 6.27850 6.40778 6.46825 6.52968 6.61581 6.63603 6.68388 6.88705 6.99954 7.08274 7.52548 7.57072 7.60608 7.81064 8.24637 8.33216 9.20102 9.83607 10.51210 11.41233 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018127 B = 0.002794 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.282577 B =10017.914528 C =10883.826326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.223 4.223 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.125 4.125 13 H 0.080 0.920 14 C 0.108 3.892 15 N -0.600 5.600 16 C 0.584 3.416 17 O -0.544 6.544 18 C -0.154 4.154 19 C -0.142 4.142 20 C 0.026 3.974 21 C -0.073 4.073 22 C -0.137 4.137 23 C -0.137 4.137 24 C 0.042 3.958 25 N -0.338 5.338 26 C -0.017 4.017 27 C 0.118 3.882 28 C -0.128 4.128 29 C 0.168 3.832 30 H 0.019 0.981 31 H 0.251 0.749 32 H 0.054 0.946 33 H 0.038 0.962 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.152 0.848 39 H 0.142 0.858 40 H 0.133 0.867 41 H 0.145 0.855 42 H 0.162 0.838 43 H 0.180 0.820 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.076 0.924 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 -22.743 4.405 23.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.146 4.146 13 H 0.099 0.901 14 C -0.014 4.014 15 N -0.331 5.331 16 C 0.372 3.628 17 O -0.423 6.423 18 C -0.162 4.162 19 C -0.166 4.166 20 C -0.078 4.078 21 C -0.092 4.092 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.076 4.076 25 N -0.002 5.002 26 C -0.149 4.149 27 C -0.005 4.005 28 C -0.168 4.168 29 C 0.059 3.941 30 H 0.036 0.964 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.170 0.830 39 H 0.160 0.840 40 H 0.151 0.849 41 H 0.163 0.837 42 H 0.179 0.821 43 H 0.197 0.803 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.392 -22.676 4.403 23.513 hybrid contribution 0.213 1.028 -0.120 1.056 sum -4.179 -21.648 4.283 22.460 Atomic orbital electron populations 1.69948 1.04876 1.24868 1.57314 1.24786 0.95688 0.97627 1.02421 0.86079 0.78780 0.83938 0.77197 1.20496 1.21823 1.21822 1.19058 0.90429 0.82287 1.43344 0.90290 1.44211 1.01606 0.99531 1.86547 1.21512 0.84024 0.88253 1.00968 1.22788 0.95633 0.99838 0.99101 1.22736 0.97812 0.93231 1.00780 0.90135 1.22117 0.81920 0.98041 0.99356 1.48164 1.09817 1.27376 1.47785 1.17547 0.87406 0.80065 0.77777 1.90754 1.21594 1.71576 1.58333 1.19583 0.96985 1.04463 0.95124 1.21030 0.97169 1.01562 0.96876 1.18789 0.97959 1.06175 0.84853 1.20661 0.94957 0.95572 0.97996 1.20924 0.96872 1.01201 0.96702 1.20720 1.01158 1.00935 0.92862 1.21687 0.87442 0.97102 1.01407 1.41294 1.17168 1.32213 1.09517 1.22191 0.93447 1.01825 0.97486 1.21637 0.89569 0.89264 0.99995 1.21886 0.99159 0.93776 1.01940 1.20641 0.91238 0.87093 0.95079 0.96356 0.93864 0.92781 0.94405 0.92176 0.92375 0.91167 0.88967 0.82988 0.83980 0.84925 0.83750 0.82075 0.80322 0.91916 0.89362 0.90552 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.88 10.43 55.49 0.58 -26.30 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.22 -6.08 9.88 -15.06 -0.15 -6.23 16 8 H 0.08 2.09 7.21 -52.48 -0.38 1.71 16 9 N -0.59 -14.76 3.35 -163.09 -0.55 -15.30 16 10 C 0.18 4.18 5.44 -1.91 -0.01 4.17 16 11 C -0.13 -2.37 6.57 -24.86 -0.16 -2.53 16 12 C -0.13 -2.14 2.87 -89.11 -0.26 -2.40 16 13 H 0.08 1.52 8.12 -51.93 -0.42 1.10 16 14 C 0.11 1.47 5.09 -3.78 -0.02 1.45 16 15 N -0.60 -9.09 3.00 -173.75 -0.52 -9.61 16 16 C 0.58 9.40 7.56 -12.48 -0.09 9.30 16 17 O -0.54 -10.42 16.45 5.28 0.09 -10.33 16 18 C -0.15 -2.12 5.31 -105.06 -0.56 -2.67 16 19 C -0.14 -1.84 10.97 -38.55 -0.42 -2.26 16 20 C 0.03 0.30 6.70 -84.00 -0.56 -0.27 16 21 C -0.07 -0.63 10.11 -39.28 -0.40 -1.03 16 22 C -0.14 -0.95 10.07 -39.50 -0.40 -1.35 16 23 C -0.14 -0.87 9.97 -39.91 -0.40 -1.27 16 24 C 0.04 0.31 10.89 -16.34 -0.18 0.14 16 25 N -0.34 -3.51 2.92 -60.42 -0.18 -3.69 16 26 C -0.02 -0.19 9.10 -16.17 -0.15 -0.33 16 27 C 0.12 1.84 6.31 -3.49 -0.02 1.82 16 28 C -0.13 -2.32 5.48 -26.98 -0.15 -2.47 16 29 C 0.17 3.34 2.58 -67.98 -0.18 3.17 16 30 H 0.02 0.38 7.90 -51.93 -0.41 -0.03 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.05 1.43 7.21 -51.93 -0.37 1.06 16 33 H 0.04 0.98 7.76 -51.93 -0.40 0.58 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 36 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 37 H 0.09 1.11 4.26 -51.93 -0.22 0.89 16 38 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 41 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 42 H 0.16 0.72 8.06 -52.49 -0.42 0.29 16 43 H 0.18 1.53 7.05 -52.49 -0.37 1.16 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.09 1.42 6.98 -51.93 -0.36 1.05 16 46 H 0.08 1.39 7.62 -51.93 -0.40 1.00 16 47 H 0.07 1.30 8.11 -51.93 -0.42 0.88 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -33.86 370.70 -10.90 -44.76 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.69 Total: 0.95 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -4.19 Total: -3.12 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.67 Total: -54.91 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.86 -10.90 -44.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036833302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.493 kcal (2) G-P(sol) polarization free energy of solvation -33.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds