Wall clock time and date at job start Tue Mar 31 2020 22:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99950 * 2 1 4 4 H 1.48500 * 109.46929 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46871 * 299.99809 * 3 2 1 6 6 H 1.48498 * 109.47184 * 60.00145 * 3 2 1 7 7 C 1.38818 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99858 * 175.10736 * 7 2 1 9 9 N 1.37888 * 119.99802 * 355.11040 * 7 2 1 10 10 C 1.44234 * 118.75028 * 214.70699 * 9 7 2 11 11 C 1.51424 * 113.75742 * 253.69531 * 10 9 7 12 12 C 1.51333 * 113.76454 * 285.16612 * 11 10 9 13 13 H 1.09210 * 111.32629 * 189.06103 * 12 11 10 14 14 C 1.54369 * 107.96620 * 311.70281 * 12 11 10 15 15 C 1.54181 * 104.31684 * 87.43880 * 14 12 11 16 16 C 1.51510 * 105.18614 * 14.04417 * 15 14 12 17 17 H 1.10010 * 107.79600 * 121.16091 * 16 15 14 18 18 C 1.49310 * 118.44552 * 34.70125 * 9 7 2 19 19 N 1.48338 * 109.88228 * 4.92443 * 16 15 14 20 20 C 1.34553 * 127.60462 * 157.11278 * 19 16 15 21 21 O 1.21773 * 119.99812 * 185.33868 * 20 19 16 22 22 C 1.46208 * 119.99949 * 5.33734 * 20 19 16 23 23 C 1.41736 * 126.80036 * 355.25196 * 22 20 19 24 24 C 1.34523 * 107.77644 * 180.28790 * 23 22 20 25 25 N 1.36951 * 109.59998 * 359.75717 * 24 23 22 26 26 C 1.36704 * 131.34695 * 180.02562 * 25 24 23 27 27 C 1.34999 * 120.75421 * 180.02562 * 26 25 24 28 28 C 1.40308 * 120.38207 * 359.95363 * 27 26 25 29 29 C 1.36336 * 119.45339 * 0.02562 * 28 27 26 30 30 C 1.36938 * 108.74519 * 359.97438 * 25 24 23 31 31 H 0.96999 * 119.99903 * 359.97438 * 1 2 3 32 32 H 1.10128 * 107.66955 * 12.70835 * 10 9 7 33 33 H 1.08381 * 110.66492 * 129.11689 * 10 9 7 34 34 H 1.09076 * 108.84968 * 46.71237 * 11 10 9 35 35 H 1.09239 * 108.56766 * 164.23936 * 11 10 9 36 36 H 1.09251 * 110.55545 * 206.23361 * 14 12 11 37 37 H 1.09152 * 110.73024 * 328.32138 * 14 12 11 38 38 H 1.08660 * 111.45959 * 252.95727 * 15 14 12 39 39 H 1.09708 * 109.57619 * 132.22224 * 15 14 12 40 40 H 1.09253 * 109.33553 * 41.06629 * 18 9 7 41 41 H 1.09482 * 108.99385 * 282.75554 * 18 9 7 42 42 H 1.08005 * 126.11530 * 0.03904 * 23 22 20 43 43 H 1.08006 * 125.19671 * 179.72338 * 24 23 22 44 44 H 1.08007 * 119.62419 * 359.96962 * 26 25 24 45 45 H 1.08008 * 119.80916 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.27273 * 179.97438 * 28 27 26 47 47 H 1.08005 * 120.33780 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0873 -1.2039 -0.0803 9 7 1.3245 -2.3942 0.1007 10 6 1.9313 -3.4843 0.8245 11 6 2.4514 -4.5932 -0.0659 12 6 1.3632 -5.4704 -0.6461 13 1 1.7833 -6.3451 -1.1473 14 6 0.4169 -5.8783 0.5032 15 6 -0.6157 -4.7353 0.5707 16 6 -0.4329 -3.9587 -0.7173 17 1 -1.3923 -3.9693 -1.2554 18 6 -0.0173 -2.4998 -0.5455 19 7 0.5570 -4.6443 -1.5836 20 6 0.6888 -4.5433 -2.9188 21 8 1.4915 -5.2458 -3.5063 22 6 -0.1318 -3.5902 -3.6644 23 6 -1.1687 -2.7749 -3.1458 24 6 -1.6703 -2.0517 -4.1632 25 7 -1.0010 -2.3577 -5.3182 26 6 -1.1441 -1.8919 -6.5954 27 6 -0.3546 -2.3503 -7.5899 28 6 0.6297 -3.3150 -7.3271 29 6 0.7831 -3.7877 -6.0575 30 6 -0.0467 -3.2989 -5.0375 31 1 -0.4850 0.8400 0.0004 32 1 2.7892 -3.0782 1.3831 33 1 1.2421 -3.8872 1.5575 34 1 3.0207 -4.1504 -0.8841 35 1 3.1277 -5.2206 0.5191 36 1 -0.0761 -6.8264 0.2760 37 1 0.9644 -5.9596 1.4440 38 1 -0.4565 -4.1067 1.4426 39 1 -1.6278 -5.1564 0.6140 40 1 0.0110 -2.0077 -1.5205 41 1 -0.7551 -1.9861 0.0793 42 1 -1.5000 -2.7431 -2.1183 43 1 -2.4778 -1.3390 -4.0817 44 1 -1.8980 -1.1493 -6.8115 45 1 -0.4811 -1.9719 -8.5936 46 1 1.2601 -3.6808 -8.1241 47 1 1.5365 -4.5301 -5.8391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039404221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:10 Heat of formation + Delta-G solvation = 99.070463 kcal Electronic energy + Delta-G solvation = -31211.031440 eV Core-core repulsion = 27361.559687 eV Total energy + Delta-G solvation = -3849.471754 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.06236 -40.01123 -37.41357 -36.42358 -34.46435 -33.15516 -32.34087 -31.07061 -30.98020 -29.64338 -27.78694 -27.03285 -25.60369 -23.87606 -23.66729 -23.05981 -21.44789 -20.83160 -20.64338 -19.00627 -18.41162 -17.44971 -16.61502 -16.20346 -15.93522 -15.49822 -15.34653 -15.21757 -15.01025 -14.48154 -14.16800 -14.05102 -13.46756 -13.29792 -13.15375 -12.90375 -12.62787 -12.48631 -12.19088 -11.95702 -11.72199 -11.50486 -11.40269 -11.26799 -11.21639 -11.12927 -10.87197 -10.63552 -10.51257 -10.32412 -10.21109 -10.06699 -9.87250 -9.73670 -9.31585 -9.21802 -8.47559 -8.32086 -7.91215 -7.09903 -6.50002 -5.69514 -3.25742 0.89797 1.39765 2.73291 2.83584 3.37469 3.45108 3.47564 3.50184 3.62789 4.20043 4.50497 4.56657 4.88783 4.89882 4.92694 5.06250 5.13283 5.26307 5.28497 5.43996 5.45823 5.49962 5.66926 5.69328 5.79974 5.84615 5.86744 5.97592 6.00809 6.05074 6.18443 6.19455 6.26553 6.35862 6.45280 6.50344 6.53169 6.57688 6.61156 6.67473 6.88903 6.89719 7.02185 7.10310 7.19432 7.43262 7.49297 7.73861 7.88431 8.32447 8.56845 8.92323 9.30020 9.94061 10.41129 11.31242 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009428 B = 0.005558 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.270402 B = 5036.942972 C = 6796.969578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.015 3.985 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.252 4.252 8 H 0.061 0.939 9 N -0.591 5.591 10 C 0.159 3.841 11 C -0.154 4.154 12 C 0.143 3.857 13 H 0.082 0.918 14 C -0.124 4.124 15 C -0.117 4.117 16 C 0.102 3.898 17 H 0.067 0.933 18 C 0.157 3.843 19 N -0.594 5.594 20 C 0.619 3.381 21 O -0.574 6.574 22 C -0.224 4.224 23 C -0.100 4.100 24 C -0.068 4.068 25 N -0.339 5.339 26 C 0.049 3.951 27 C -0.150 4.150 28 C -0.129 4.129 29 C -0.074 4.074 30 C 0.104 3.896 31 H 0.251 0.749 32 H 0.043 0.957 33 H 0.031 0.969 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.174 0.826 43 H 0.171 0.829 44 H 0.160 0.840 45 H 0.143 0.857 46 H 0.133 0.867 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.729 -7.483 -8.046 12.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.183 4.183 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.215 1.215 7 C -0.382 4.382 8 H 0.079 0.921 9 N -0.315 5.315 10 C 0.031 3.969 11 C -0.195 4.195 12 C 0.040 3.960 13 H 0.100 0.900 14 C -0.162 4.162 15 C -0.155 4.155 16 C -0.002 4.002 17 H 0.085 0.915 18 C 0.033 3.967 19 N -0.325 5.325 20 C 0.412 3.588 21 O -0.457 6.457 22 C -0.233 4.233 23 C -0.121 4.121 24 C -0.193 4.193 25 N -0.003 5.003 26 C -0.073 4.073 27 C -0.170 4.170 28 C -0.150 4.150 29 C -0.093 4.093 30 C -0.005 4.005 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.191 0.809 43 H 0.189 0.811 44 H 0.177 0.823 45 H 0.161 0.839 46 H 0.151 0.849 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.573 -7.536 -8.585 12.710 hybrid contribution 0.477 1.239 -0.127 1.334 sum -5.095 -6.297 -8.713 11.897 Atomic orbital electron populations 1.69904 1.05101 1.24870 1.55134 1.25253 0.95470 0.97860 0.99737 0.86284 0.79531 0.84285 0.77139 1.20371 1.21891 1.21515 1.19395 0.90668 0.83345 1.44782 0.92140 1.43987 1.17729 1.09403 1.60381 1.19975 0.96326 0.88485 0.92082 1.22129 0.97533 0.98748 1.01082 1.21628 0.92174 0.93512 0.88704 0.90020 1.22521 0.97232 0.97869 0.98627 1.21937 0.98520 0.96887 0.98178 1.22437 0.91489 0.95628 0.90652 0.91496 1.22157 0.88306 0.87495 0.98736 1.48747 1.34387 1.44811 1.04606 1.16320 0.81660 0.81347 0.79511 1.90702 1.39780 1.46814 1.68393 1.19274 1.05318 1.07318 0.91409 1.21923 0.95514 0.95048 0.99625 1.21754 1.05223 1.09222 0.83077 1.41526 1.24346 1.27521 1.06887 1.21631 1.02387 1.01061 0.82185 1.20677 0.97410 0.99989 0.98950 1.21024 0.99072 0.98034 0.96884 1.20841 0.98155 0.99612 0.90690 1.18557 0.93424 0.94261 0.94259 0.93860 0.93797 0.95156 0.92167 0.92678 0.91937 0.90145 0.89259 0.91909 0.91991 0.90990 0.80933 0.81140 0.82271 0.83933 0.84899 0.83030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.92 10.44 55.49 0.58 -24.34 16 2 C 0.01 0.41 5.42 -17.43 -0.09 0.32 16 3 Si 0.90 21.82 29.56 -169.99 -5.02 16.80 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.25 -6.92 9.33 -14.61 -0.14 -7.06 16 8 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 9 N -0.59 -14.42 3.10 -173.01 -0.54 -14.96 16 10 C 0.16 3.29 5.12 -6.04 -0.03 3.26 16 11 C -0.15 -2.88 5.08 -28.37 -0.14 -3.03 16 12 C 0.14 2.51 3.78 -66.84 -0.25 2.26 16 13 H 0.08 1.44 8.00 -51.81 -0.41 1.02 16 14 C -0.12 -1.76 5.98 -25.40 -0.15 -1.92 16 15 C -0.12 -1.80 5.64 -26.87 -0.15 -1.95 16 16 C 0.10 1.86 2.17 -67.85 -0.15 1.71 16 17 H 0.07 1.14 5.57 -51.35 -0.29 0.86 16 18 C 0.16 3.54 3.30 -2.66 -0.01 3.53 16 19 N -0.59 -11.65 2.59 -157.95 -0.41 -12.06 16 20 C 0.62 13.28 7.82 -13.16 -0.10 13.18 16 21 O -0.57 -13.29 16.02 5.12 0.08 -13.20 16 22 C -0.22 -4.46 6.01 -104.46 -0.63 -5.08 16 23 C -0.10 -1.82 7.37 -39.56 -0.29 -2.11 16 24 C -0.07 -1.08 11.53 -16.58 -0.19 -1.27 16 25 N -0.34 -5.30 2.92 -60.81 -0.18 -5.48 16 26 C 0.05 0.58 10.89 -16.53 -0.18 0.40 16 27 C -0.15 -1.60 9.98 -39.95 -0.40 -2.00 16 28 C -0.13 -1.59 10.09 -39.49 -0.40 -1.99 16 29 C -0.07 -1.19 9.72 -39.50 -0.38 -1.57 16 30 C 0.10 1.88 6.70 -83.92 -0.56 1.32 16 31 H 0.25 6.72 8.31 -40.82 -0.34 6.39 16 32 H 0.04 0.93 7.84 -51.29 -0.40 0.53 16 33 H 0.03 0.58 4.53 -52.28 -0.24 0.34 16 34 H 0.06 1.33 8.15 -51.89 -0.42 0.91 16 35 H 0.05 0.88 8.16 -51.79 -0.42 0.45 16 36 H 0.06 0.79 8.16 -51.79 -0.42 0.37 16 37 H 0.08 1.03 7.40 -51.84 -0.38 0.64 16 38 H 0.09 1.46 6.28 -52.12 -0.33 1.13 16 39 H 0.06 0.82 8.20 -51.53 -0.42 0.39 16 40 H 0.06 1.55 5.19 -51.79 -0.27 1.29 16 41 H 0.07 1.77 6.67 -51.66 -0.34 1.43 16 42 H 0.17 3.10 3.71 -52.48 -0.19 2.90 16 43 H 0.17 2.13 8.06 -52.48 -0.42 1.71 16 44 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 45 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 46 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 47 H 0.15 2.52 7.08 -52.48 -0.37 2.15 16 LS Contribution 355.18 15.07 5.35 5.35 Total: -1.00 -32.97 355.18 -10.55 -43.51 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.16 Total: 6.38 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -4.25 Total: -2.00 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: -0.54 Total: -56.84 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.97 -10.55 -43.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039404221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.584 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds