Wall clock time and date at job start Tue Mar 31 2020 22:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99950 * 2 1 4 4 H 1.48500 * 109.46929 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46871 * 299.99809 * 3 2 1 6 6 H 1.48498 * 109.47184 * 60.00145 * 3 2 1 7 7 C 1.38818 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99858 * 175.10736 * 7 2 1 9 9 N 1.37888 * 119.99802 * 355.11040 * 7 2 1 10 10 C 1.44234 * 118.75028 * 214.70699 * 9 7 2 11 11 C 1.51424 * 113.75742 * 253.69531 * 10 9 7 12 12 C 1.51333 * 113.76454 * 285.16612 * 11 10 9 13 13 H 1.09210 * 111.32629 * 189.06103 * 12 11 10 14 14 C 1.54369 * 107.96620 * 311.70281 * 12 11 10 15 15 C 1.54181 * 104.31684 * 87.43880 * 14 12 11 16 16 C 1.51510 * 105.18614 * 14.04417 * 15 14 12 17 17 H 1.10010 * 107.79600 * 121.16091 * 16 15 14 18 18 C 1.49310 * 118.44552 * 34.70125 * 9 7 2 19 19 N 1.48338 * 109.88228 * 4.92443 * 16 15 14 20 20 C 1.34553 * 127.60462 * 157.11278 * 19 16 15 21 21 O 1.21773 * 119.99812 * 185.33868 * 20 19 16 22 22 C 1.46208 * 119.99949 * 5.33734 * 20 19 16 23 23 C 1.41736 * 126.80036 * 355.25196 * 22 20 19 24 24 C 1.34523 * 107.77644 * 180.28790 * 23 22 20 25 25 N 1.36951 * 109.59998 * 359.75717 * 24 23 22 26 26 C 1.36704 * 131.34695 * 180.02562 * 25 24 23 27 27 C 1.34999 * 120.75421 * 180.02562 * 26 25 24 28 28 C 1.40308 * 120.38207 * 359.95363 * 27 26 25 29 29 C 1.36336 * 119.45339 * 0.02562 * 28 27 26 30 30 C 1.36938 * 108.74519 * 359.97438 * 25 24 23 31 31 H 0.96999 * 119.99903 * 359.97438 * 1 2 3 32 32 H 1.10128 * 107.66955 * 12.70835 * 10 9 7 33 33 H 1.08381 * 110.66492 * 129.11689 * 10 9 7 34 34 H 1.09076 * 108.84968 * 46.71237 * 11 10 9 35 35 H 1.09239 * 108.56766 * 164.23936 * 11 10 9 36 36 H 1.09251 * 110.55545 * 206.23361 * 14 12 11 37 37 H 1.09152 * 110.73024 * 328.32138 * 14 12 11 38 38 H 1.08660 * 111.45959 * 252.95727 * 15 14 12 39 39 H 1.09708 * 109.57619 * 132.22224 * 15 14 12 40 40 H 1.09253 * 109.33553 * 41.06629 * 18 9 7 41 41 H 1.09482 * 108.99385 * 282.75554 * 18 9 7 42 42 H 1.08005 * 126.11530 * 0.03904 * 23 22 20 43 43 H 1.08006 * 125.19671 * 179.72338 * 24 23 22 44 44 H 1.08007 * 119.62419 * 359.96962 * 26 25 24 45 45 H 1.08008 * 119.80916 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.27273 * 179.97438 * 28 27 26 47 47 H 1.08005 * 120.33780 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0873 -1.2039 -0.0803 9 7 1.3245 -2.3942 0.1007 10 6 1.9313 -3.4843 0.8245 11 6 2.4514 -4.5932 -0.0659 12 6 1.3632 -5.4704 -0.6461 13 1 1.7833 -6.3451 -1.1473 14 6 0.4169 -5.8783 0.5032 15 6 -0.6157 -4.7353 0.5707 16 6 -0.4329 -3.9587 -0.7173 17 1 -1.3923 -3.9693 -1.2554 18 6 -0.0173 -2.4998 -0.5455 19 7 0.5570 -4.6443 -1.5836 20 6 0.6888 -4.5433 -2.9188 21 8 1.4915 -5.2458 -3.5063 22 6 -0.1318 -3.5902 -3.6644 23 6 -1.1687 -2.7749 -3.1458 24 6 -1.6703 -2.0517 -4.1632 25 7 -1.0010 -2.3577 -5.3182 26 6 -1.1441 -1.8919 -6.5954 27 6 -0.3546 -2.3503 -7.5899 28 6 0.6297 -3.3150 -7.3271 29 6 0.7831 -3.7877 -6.0575 30 6 -0.0467 -3.2989 -5.0375 31 1 -0.4850 0.8400 0.0004 32 1 2.7892 -3.0782 1.3831 33 1 1.2421 -3.8872 1.5575 34 1 3.0207 -4.1504 -0.8841 35 1 3.1277 -5.2206 0.5191 36 1 -0.0761 -6.8264 0.2760 37 1 0.9644 -5.9596 1.4440 38 1 -0.4565 -4.1067 1.4426 39 1 -1.6278 -5.1564 0.6140 40 1 0.0110 -2.0077 -1.5205 41 1 -0.7551 -1.9861 0.0793 42 1 -1.5000 -2.7431 -2.1183 43 1 -2.4778 -1.3390 -4.0817 44 1 -1.8980 -1.1493 -6.8115 45 1 -0.4811 -1.9719 -8.5936 46 1 1.2601 -3.6808 -8.1241 47 1 1.5365 -4.5301 -5.8391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039404221.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:09 Heat of formation + Delta-G solvation = 80.349913 kcal Electronic energy + Delta-G solvation = -31211.843224 eV Core-core repulsion = 27361.559687 eV Total energy + Delta-G solvation = -3850.283538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.26230 -41.48057 -38.97975 -37.55764 -36.30593 -34.57267 -33.69989 -32.88030 -32.45198 -30.83924 -29.01044 -28.76683 -27.16086 -25.70261 -24.90053 -24.34566 -22.75676 -22.24831 -22.01563 -20.62683 -19.83982 -18.87307 -18.29550 -17.40765 -17.29201 -17.00051 -16.86525 -16.48900 -16.42308 -15.86794 -15.72233 -15.37431 -15.16393 -14.71490 -14.56039 -14.45511 -14.22633 -13.94594 -13.53689 -13.45719 -13.13911 -12.90453 -12.86053 -12.75585 -12.63009 -12.52878 -12.33313 -12.29300 -12.25784 -11.89412 -11.79272 -11.62680 -11.46028 -11.27719 -10.89456 -10.78393 -10.49840 -9.59112 -9.46978 -8.48552 -8.30497 -7.75544 -5.35485 -0.21154 0.26545 1.37008 1.41067 1.43183 1.52226 1.68821 2.17195 2.38523 2.49131 2.76863 3.31172 3.51336 3.62507 3.70684 3.85293 3.87244 3.94997 4.02875 4.07109 4.15167 4.16993 4.26822 4.33737 4.43248 4.45417 4.64377 4.66891 4.76891 4.84358 4.88612 4.95666 4.99799 5.04040 5.10553 5.13551 5.19979 5.24525 5.29288 5.35076 5.37105 5.45734 5.60317 5.63712 5.72159 5.80943 5.89378 5.89790 6.33225 6.48956 6.78206 7.25385 7.36561 8.00031 8.39107 9.20406 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009428 B = 0.005558 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.270402 B = 5036.942972 C = 6796.969578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.026 4.026 3 Si 0.954 3.046 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.272 4.272 8 H 0.043 0.957 9 N -0.607 5.607 10 C 0.157 3.843 11 C -0.142 4.142 12 C 0.133 3.867 13 H 0.080 0.920 14 C -0.110 4.110 15 C -0.115 4.115 16 C 0.107 3.893 17 H 0.078 0.922 18 C 0.174 3.826 19 N -0.598 5.598 20 C 0.605 3.395 21 O -0.609 6.609 22 C -0.280 4.280 23 C -0.116 4.116 24 C -0.070 4.070 25 N -0.339 5.339 26 C 0.045 3.955 27 C -0.145 4.145 28 C -0.094 4.094 29 C -0.127 4.127 30 C 0.095 3.905 31 H 0.250 0.750 32 H 0.031 0.969 33 H 0.058 0.942 34 H 0.013 0.987 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.030 0.970 41 H 0.049 0.951 42 H 0.165 0.835 43 H 0.204 0.796 44 H 0.204 0.796 45 H 0.194 0.806 46 H 0.168 0.832 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.199 -7.291 -9.497 13.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.223 4.223 3 Si 0.782 3.218 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.208 1.208 7 C -0.402 4.402 8 H 0.061 0.939 9 N -0.332 5.332 10 C 0.031 3.969 11 C -0.183 4.183 12 C 0.031 3.969 13 H 0.098 0.902 14 C -0.148 4.148 15 C -0.153 4.153 16 C 0.004 3.996 17 H 0.096 0.904 18 C 0.050 3.950 19 N -0.329 5.329 20 C 0.400 3.600 21 O -0.495 6.495 22 C -0.289 4.289 23 C -0.137 4.137 24 C -0.194 4.194 25 N -0.003 5.003 26 C -0.075 4.075 27 C -0.164 4.164 28 C -0.115 4.115 29 C -0.146 4.146 30 C -0.016 4.016 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.032 0.968 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.049 0.951 41 H 0.067 0.933 42 H 0.182 0.818 43 H 0.221 0.779 44 H 0.221 0.779 45 H 0.211 0.789 46 H 0.185 0.815 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.057 -7.355 -9.996 14.277 hybrid contribution 0.972 1.243 0.076 1.580 sum -6.085 -6.112 -9.921 13.145 Atomic orbital electron populations 1.70062 1.05705 1.25188 1.55252 1.25821 0.96355 1.00254 0.99887 0.85425 0.78374 0.80967 0.76992 1.20432 1.22060 1.20792 1.19508 0.90294 0.85155 1.45280 0.93901 1.44232 1.18215 1.09578 1.61136 1.20123 0.96275 0.88073 0.92478 1.21999 0.98092 0.98632 0.99554 1.21847 0.92654 0.92870 0.89577 0.90209 1.22509 0.96165 0.98281 0.97861 1.21945 1.00901 0.96763 0.95653 1.22357 0.91447 0.93472 0.92359 0.90420 1.21798 0.86848 0.90084 0.96235 1.48846 1.34731 1.44854 1.04463 1.16773 0.81597 0.81437 0.80230 1.90639 1.41367 1.48335 1.69189 1.19358 1.07381 1.09358 0.92849 1.21873 0.95860 0.95925 1.00011 1.22144 1.05544 1.09038 0.82686 1.41764 1.23445 1.26826 1.08272 1.22616 1.03190 1.01141 0.80583 1.21323 0.95647 0.98501 1.00927 1.21569 0.98176 0.95936 0.95804 1.20807 0.99534 1.01901 0.92321 1.18809 0.94033 0.94599 0.94145 0.94031 0.95054 0.92478 0.96762 0.89334 0.89378 0.87854 0.90081 0.88624 0.95144 0.93338 0.81786 0.77892 0.77933 0.78893 0.81491 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.86 10.44 21.65 0.23 -51.64 16 2 C -0.03 -1.49 5.42 84.86 0.46 -1.03 16 3 Si 0.95 45.87 29.56 68.60 2.03 47.90 16 4 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 7 C -0.27 -15.60 9.33 83.88 0.78 -14.82 16 8 H 0.04 2.55 7.83 -2.91 -0.02 2.52 16 9 N -0.61 -30.91 3.10 -701.27 -2.17 -33.08 16 10 C 0.16 6.62 5.12 86.28 0.44 7.06 16 11 C -0.14 -5.45 5.08 29.53 0.15 -5.30 16 12 C 0.13 4.71 3.78 44.49 0.17 4.88 16 13 H 0.08 2.85 8.00 -2.28 -0.02 2.83 16 14 C -0.11 -2.87 5.98 31.46 0.19 -2.68 16 15 C -0.11 -3.34 5.64 30.51 0.17 -3.17 16 16 C 0.11 4.02 2.17 44.04 0.10 4.11 16 17 H 0.08 2.75 5.57 -1.85 -0.01 2.74 16 18 C 0.17 8.23 3.30 85.72 0.28 8.52 16 19 N -0.60 -24.56 2.59 -771.95 -2.00 -26.56 16 20 C 0.61 27.94 7.82 86.35 0.68 28.61 16 21 O -0.61 -30.56 16.02 -4.58 -0.07 -30.63 16 22 C -0.28 -11.95 6.01 -19.76 -0.12 -12.07 16 23 C -0.12 -4.43 7.37 22.28 0.16 -4.26 16 24 C -0.07 -2.22 11.53 83.04 0.96 -1.26 16 25 N -0.34 -10.35 2.92 -346.29 -1.01 -11.36 16 26 C 0.05 0.91 10.89 83.19 0.91 1.82 16 27 C -0.14 -2.44 9.98 22.03 0.22 -2.22 16 28 C -0.09 -2.07 10.09 22.33 0.23 -1.84 16 29 C -0.13 -4.17 9.72 22.32 0.22 -3.96 16 30 C 0.09 3.57 6.70 39.43 0.26 3.84 16 31 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 32 H 0.03 1.36 7.84 -1.78 -0.01 1.35 16 33 H 0.06 2.12 4.53 -2.71 -0.01 2.11 16 34 H 0.01 0.64 8.15 -2.35 -0.02 0.63 16 35 H 0.09 2.76 8.16 -2.26 -0.02 2.74 16 36 H 0.09 1.91 8.16 -2.25 -0.02 1.90 16 37 H 0.10 2.26 7.40 -2.31 -0.02 2.25 16 38 H 0.08 2.52 6.28 -2.57 -0.02 2.51 16 39 H 0.10 2.21 8.20 -2.01 -0.02 2.19 16 40 H 0.03 1.63 5.19 -2.25 -0.01 1.62 16 41 H 0.05 2.50 6.67 -2.13 -0.01 2.49 16 42 H 0.17 6.29 3.71 -2.91 -0.01 6.28 16 43 H 0.20 4.77 8.06 -2.91 -0.02 4.74 16 44 H 0.20 2.25 8.06 -2.91 -0.02 2.22 16 45 H 0.19 1.39 8.06 -2.91 -0.02 1.37 16 46 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 47 H 0.13 4.73 7.08 -2.91 -0.02 4.71 16 Total: -1.00 -79.36 355.18 4.26 -75.11 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 1.02 Total: 24.04 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 6.25 Total: 6.23 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -4.96 Total: -122.64 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.07 Total: -30.63 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -79.36 4.26 -75.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039404221.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.456 kcal (2) G-P(sol) polarization free energy of solvation -79.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds