Wall clock time and date at job start Tue Mar 31 2020 22:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00067 * 2 1 4 4 H 1.48498 * 109.47322 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46964 * 300.00668 * 3 2 1 6 6 H 1.48500 * 109.46958 * 60.00265 * 3 2 1 7 7 C 1.38818 * 120.00375 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99987 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99530 * 359.97438 * 7 2 1 10 10 C 1.47559 * 125.67932 * 0.04494 * 9 7 2 11 11 C 1.55183 * 105.01136 * 203.82816 * 10 9 7 12 12 C 1.53656 * 101.41782 * 324.50639 * 11 10 9 13 13 C 1.53659 * 111.42025 * 272.73543 * 12 11 10 14 14 C 1.55433 * 101.31402 * 204.77256 * 13 12 11 15 15 N 1.47562 * 104.88053 * 35.82094 * 14 13 12 16 16 C 1.34771 * 125.67429 * 156.03116 * 15 14 13 17 17 O 1.21778 * 120.00120 * 354.44023 * 16 15 14 18 18 C 1.46209 * 120.00057 * 174.71292 * 16 15 14 19 19 C 1.41730 * 126.79899 * 4.74971 * 18 16 15 20 20 C 1.34529 * 107.77947 * 179.86371 * 19 18 16 21 21 N 1.36955 * 109.59608 * 0.40354 * 20 19 18 22 22 C 1.36704 * 131.34641 * 179.71539 * 21 20 19 23 23 C 1.34995 * 120.75785 * 180.02562 * 22 21 20 24 24 C 1.40307 * 120.37964 * 0.05114 * 23 22 21 25 25 C 1.36343 * 119.45503 * 359.95086 * 24 23 22 26 26 C 1.36944 * 108.74480 * 359.74764 * 21 20 19 27 27 C 1.47404 * 108.65336 * 335.77470 * 15 14 13 28 28 C 1.47405 * 125.67364 * 180.02562 * 9 7 2 29 29 H 0.96995 * 119.99956 * 359.97438 * 1 2 3 30 30 H 1.09010 * 110.33038 * 322.70700 * 10 9 7 31 31 H 1.08999 * 110.33945 * 84.83541 * 10 9 7 32 32 H 1.08996 * 111.03645 * 206.47230 * 11 10 9 33 33 H 1.09002 * 111.03732 * 82.53782 * 11 10 9 34 34 H 1.09004 * 111.03164 * 322.99832 * 13 12 11 35 35 H 1.08999 * 111.03431 * 86.88631 * 13 12 11 36 36 H 1.09006 * 110.48009 * 276.94230 * 14 13 12 37 37 H 1.08989 * 110.30750 * 154.62129 * 14 13 12 38 38 H 1.08003 * 126.11630 * 359.97438 * 19 18 16 39 39 H 1.07997 * 125.20267 * 180.13268 * 20 19 18 40 40 H 1.08008 * 119.62143 * 0.03337 * 22 21 20 41 41 H 1.08001 * 119.81452 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.27304 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.33434 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.98893 * 121.71706 * 27 15 14 45 45 H 1.09000 * 109.98909 * 242.98586 * 27 15 14 46 46 H 1.09009 * 109.98616 * 58.57266 * 28 9 7 47 47 H 1.09000 * 109.98979 * 297.26993 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1427 -2.5340 -0.0009 11 6 -0.4072 -3.9381 0.6048 12 6 0.7835 -4.7369 0.0523 13 6 0.4709 -5.3243 -1.3327 14 6 1.4441 -6.5355 -1.3770 15 7 1.4775 -7.0455 0.0073 16 6 1.7964 -8.3025 0.3743 17 8 1.9914 -9.1537 -0.4744 18 6 1.9025 -8.6456 1.7917 19 6 1.6112 -7.8027 2.8933 20 6 1.8369 -8.5047 4.0185 21 7 2.2704 -9.7631 3.6957 22 6 2.6282 -10.8239 4.4802 23 6 3.0314 -11.9871 3.9263 24 6 3.0908 -12.1259 2.5314 25 6 2.7367 -11.0755 1.7375 26 6 2.3195 -9.8752 2.3317 27 6 1.1100 -5.9499 0.9224 28 6 1.9328 -3.7312 -0.0005 29 1 -0.4850 0.8400 0.0004 30 1 -0.6002 -1.7622 0.6181 31 1 -0.5285 -2.4801 -1.0189 32 1 -1.3522 -4.3468 0.2471 33 1 -0.3844 -3.9050 1.6940 34 1 -0.5676 -5.6495 -1.3944 35 1 0.7023 -4.6093 -2.1222 36 1 2.4388 -6.2144 -1.6863 37 1 1.0647 -7.3011 -2.0536 38 1 1.2676 -6.7802 2.8392 39 1 1.7015 -8.1314 5.0228 40 1 2.5878 -10.7304 5.5554 41 1 3.3102 -12.8157 4.5606 42 1 3.4139 -13.0572 2.0901 43 1 2.7766 -11.1668 0.6621 44 1 0.2367 -6.2325 1.5103 45 1 1.9456 -5.7206 1.5837 46 1 2.5730 -3.8507 0.8736 47 1 2.5140 -3.8774 -0.9110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041464616.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:06 Heat of formation + Delta-G solvation = 86.505828 kcal Electronic energy + Delta-G solvation = -29256.446121 eV Core-core repulsion = 25406.429523 eV Total energy + Delta-G solvation = -3850.016597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.48442 -40.07424 -38.16946 -36.80316 -35.50664 -33.22968 -32.61273 -30.86216 -30.03429 -29.35778 -28.24651 -28.04359 -25.62595 -24.28024 -23.94495 -23.08051 -21.85672 -21.49285 -20.32869 -19.38644 -18.68486 -17.78134 -16.88258 -16.54908 -16.26891 -15.91910 -15.76299 -15.42778 -14.93956 -14.80905 -14.50601 -14.25050 -13.95457 -13.82190 -13.47782 -13.05482 -12.90936 -12.46294 -12.35158 -12.25396 -12.03981 -11.88379 -11.81567 -11.59628 -11.40010 -11.27807 -11.07983 -10.87290 -10.76501 -10.55942 -10.18217 -10.00841 -9.94719 -9.78106 -9.71736 -9.42931 -8.89890 -8.64473 -8.44317 -7.55593 -6.82332 -5.65112 -3.06131 0.49238 0.98328 2.23859 2.38813 3.09567 3.24056 3.39840 3.45788 3.47990 3.69618 4.19396 4.48627 4.51419 4.53662 4.63319 4.75617 4.82819 4.91139 4.99451 5.07078 5.25831 5.40562 5.46936 5.47647 5.50275 5.56245 5.60439 5.72172 5.79352 5.87180 5.90825 5.98405 6.03712 6.08263 6.10311 6.22013 6.30941 6.35672 6.42945 6.54909 6.56257 6.64156 6.69700 6.76570 6.86798 6.98373 7.52393 7.63678 7.75877 7.86080 8.36124 8.43072 9.22679 9.83242 10.48506 11.38958 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021194 B = 0.002499 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.788189 B =11201.405136 C =11812.199686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.155 3.845 11 C -0.131 4.131 12 C -0.083 4.083 13 C -0.114 4.114 14 C 0.110 3.890 15 N -0.611 5.611 16 C 0.607 3.393 17 O -0.562 6.562 18 C -0.233 4.233 19 C -0.113 4.113 20 C -0.066 4.066 21 N -0.338 5.338 22 C 0.047 3.953 23 C -0.144 4.144 24 C -0.122 4.122 25 C -0.078 4.078 26 C 0.109 3.891 27 C 0.114 3.886 28 C 0.151 3.849 29 H 0.251 0.749 30 H 0.105 0.895 31 H 0.013 0.987 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.167 0.833 39 H 0.174 0.826 40 H 0.163 0.837 41 H 0.147 0.853 42 H 0.137 0.863 43 H 0.155 0.845 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.025 0.975 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.301 -22.536 8.907 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.744 3.256 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.030 3.970 11 C -0.170 4.170 12 C -0.084 4.084 13 C -0.152 4.152 14 C -0.013 4.013 15 N -0.344 5.344 16 C 0.399 3.601 17 O -0.443 6.443 18 C -0.242 4.242 19 C -0.134 4.134 20 C -0.191 4.191 21 N -0.002 5.002 22 C -0.074 4.074 23 C -0.164 4.164 24 C -0.143 4.143 25 C -0.097 4.097 26 C 0.000 4.000 27 C -0.008 4.008 28 C 0.026 3.974 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.031 0.969 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.184 0.816 39 H 0.191 0.809 40 H 0.180 0.820 41 H 0.164 0.836 42 H 0.155 0.845 43 H 0.172 0.828 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.043 0.957 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.422 -22.885 8.717 24.609 hybrid contribution 0.495 0.926 0.160 1.062 sum 2.917 -21.959 8.877 23.865 Atomic orbital electron populations 1.69807 1.04851 1.24607 1.57857 1.24773 0.95717 0.97656 1.02586 0.86019 0.78678 0.83716 0.77223 1.20564 1.21807 1.21785 1.19120 0.90519 0.82452 1.42709 0.90498 1.44631 1.01897 0.99599 1.86883 1.21959 0.84587 0.92199 0.98275 1.22871 0.95111 0.98896 1.00104 1.21574 0.98441 0.93672 0.94731 1.22686 0.98884 0.96106 0.97506 1.22355 0.99874 0.95924 0.83099 1.48344 1.68013 1.09453 1.08554 1.16612 0.76153 0.80457 0.86904 1.90748 1.53091 1.47606 1.52893 1.19283 1.17767 0.94038 0.93151 1.21752 1.00748 1.00322 0.90621 1.21790 1.13321 0.83226 1.00769 1.41571 1.41537 1.10444 1.06681 1.21693 1.01856 0.86820 0.97037 1.20772 1.02727 0.96951 0.95995 1.21121 1.00629 0.99419 0.93101 1.20890 0.97071 0.89839 1.01912 1.18609 1.03868 0.95731 0.81807 1.22295 0.99818 0.85926 0.92798 1.21132 0.92749 0.85484 0.98079 0.93823 0.87746 0.96915 0.91991 0.91890 0.90802 0.89334 0.91433 0.90666 0.81627 0.80881 0.81958 0.83566 0.84527 0.82752 0.90961 0.90812 0.95706 0.95824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.45 10.10 55.49 0.56 -25.89 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.22 -6.02 10.28 -15.06 -0.15 -6.17 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -14.98 3.41 -170.40 -0.58 -15.56 16 10 C 0.15 3.59 5.83 -2.31 -0.01 3.58 16 11 C -0.13 -2.31 5.93 -25.23 -0.15 -2.46 16 12 C -0.08 -1.37 0.61 -154.02 -0.09 -1.46 16 13 C -0.11 -1.72 5.87 -25.10 -0.15 -1.87 16 14 C 0.11 1.63 6.91 -2.17 -0.01 1.61 16 15 N -0.61 -9.41 3.34 -172.40 -0.58 -9.98 16 16 C 0.61 10.02 7.80 -13.06 -0.10 9.92 16 17 O -0.56 -10.53 15.92 5.12 0.08 -10.45 16 18 C -0.23 -3.38 6.16 -104.46 -0.64 -4.02 16 19 C -0.11 -1.37 9.21 -39.56 -0.36 -1.73 16 20 C -0.07 -0.67 11.53 -16.57 -0.19 -0.86 16 21 N -0.34 -3.62 2.92 -60.81 -0.18 -3.79 16 22 C 0.05 0.35 10.89 -16.53 -0.18 0.17 16 23 C -0.14 -0.97 9.98 -39.96 -0.40 -1.36 16 24 C -0.12 -1.01 10.09 -39.49 -0.40 -1.41 16 25 C -0.08 -0.91 9.72 -39.50 -0.38 -1.29 16 26 C 0.11 1.44 6.70 -83.91 -0.56 0.88 16 27 C 0.11 1.63 4.23 -3.64 -0.02 1.62 16 28 C 0.15 3.05 6.39 -3.64 -0.02 3.03 16 29 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.10 2.76 5.89 -51.92 -0.31 2.46 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.98 7.78 -51.93 -0.40 0.57 16 33 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 34 H 0.07 1.04 7.82 -51.93 -0.41 0.64 16 35 H 0.09 1.42 7.94 -51.93 -0.41 1.01 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.10 7.99 -51.94 -0.42 0.68 16 38 H 0.17 1.82 4.54 -52.48 -0.24 1.58 16 39 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.16 0.65 8.06 -52.48 -0.42 0.22 16 41 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 42 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 43 H 0.15 1.90 7.08 -52.48 -0.37 1.52 16 44 H 0.07 0.94 6.67 -51.93 -0.35 0.59 16 45 H 0.07 1.04 6.19 -51.93 -0.32 0.72 16 46 H 0.03 0.50 7.44 -51.92 -0.39 0.12 16 47 H 0.02 0.49 7.78 -51.93 -0.40 0.08 16 LS Contribution 370.03 15.07 5.58 5.58 Total: -1.00 -33.50 370.03 -10.59 -44.09 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.51 Total: 1.42 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -3.93 Total: -2.25 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.77 Total: -55.23 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.50 -10.59 -44.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041464616.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.591 kcal (2) G-P(sol) polarization free energy of solvation -33.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds