Wall clock time and date at job start Tue Mar 31 2020 22:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00067 * 2 1 4 4 H 1.48498 * 109.47322 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46964 * 300.00668 * 3 2 1 6 6 H 1.48500 * 109.46958 * 60.00265 * 3 2 1 7 7 C 1.38818 * 120.00375 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99987 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99530 * 359.97438 * 7 2 1 10 10 C 1.47559 * 125.67932 * 0.04494 * 9 7 2 11 11 C 1.55183 * 105.01136 * 203.82816 * 10 9 7 12 12 C 1.53656 * 101.41782 * 324.50639 * 11 10 9 13 13 C 1.53659 * 111.42025 * 272.73543 * 12 11 10 14 14 C 1.55433 * 101.31402 * 204.77256 * 13 12 11 15 15 N 1.47562 * 104.88053 * 35.82094 * 14 13 12 16 16 C 1.34771 * 125.67429 * 156.03116 * 15 14 13 17 17 O 1.21778 * 120.00120 * 354.44023 * 16 15 14 18 18 C 1.46209 * 120.00057 * 174.71292 * 16 15 14 19 19 C 1.41730 * 126.79899 * 4.74971 * 18 16 15 20 20 C 1.34529 * 107.77947 * 179.86371 * 19 18 16 21 21 N 1.36955 * 109.59608 * 0.40354 * 20 19 18 22 22 C 1.36704 * 131.34641 * 179.71539 * 21 20 19 23 23 C 1.34995 * 120.75785 * 180.02562 * 22 21 20 24 24 C 1.40307 * 120.37964 * 0.05114 * 23 22 21 25 25 C 1.36343 * 119.45503 * 359.95086 * 24 23 22 26 26 C 1.36944 * 108.74480 * 359.74764 * 21 20 19 27 27 C 1.47404 * 108.65336 * 335.77470 * 15 14 13 28 28 C 1.47405 * 125.67364 * 180.02562 * 9 7 2 29 29 H 0.96995 * 119.99956 * 359.97438 * 1 2 3 30 30 H 1.09010 * 110.33038 * 322.70700 * 10 9 7 31 31 H 1.08999 * 110.33945 * 84.83541 * 10 9 7 32 32 H 1.08996 * 111.03645 * 206.47230 * 11 10 9 33 33 H 1.09002 * 111.03732 * 82.53782 * 11 10 9 34 34 H 1.09004 * 111.03164 * 322.99832 * 13 12 11 35 35 H 1.08999 * 111.03431 * 86.88631 * 13 12 11 36 36 H 1.09006 * 110.48009 * 276.94230 * 14 13 12 37 37 H 1.08989 * 110.30750 * 154.62129 * 14 13 12 38 38 H 1.08003 * 126.11630 * 359.97438 * 19 18 16 39 39 H 1.07997 * 125.20267 * 180.13268 * 20 19 18 40 40 H 1.08008 * 119.62143 * 0.03337 * 22 21 20 41 41 H 1.08001 * 119.81452 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.27304 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.33434 * 180.02562 * 25 24 23 44 44 H 1.09001 * 109.98893 * 121.71706 * 27 15 14 45 45 H 1.09000 * 109.98909 * 242.98586 * 27 15 14 46 46 H 1.09009 * 109.98616 * 58.57266 * 28 9 7 47 47 H 1.09000 * 109.98979 * 297.26993 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1427 -2.5340 -0.0009 11 6 -0.4072 -3.9381 0.6048 12 6 0.7835 -4.7369 0.0523 13 6 0.4709 -5.3243 -1.3327 14 6 1.4441 -6.5355 -1.3770 15 7 1.4775 -7.0455 0.0073 16 6 1.7964 -8.3025 0.3743 17 8 1.9914 -9.1537 -0.4744 18 6 1.9025 -8.6456 1.7917 19 6 1.6112 -7.8027 2.8933 20 6 1.8369 -8.5047 4.0185 21 7 2.2704 -9.7631 3.6957 22 6 2.6282 -10.8239 4.4802 23 6 3.0314 -11.9871 3.9263 24 6 3.0908 -12.1259 2.5314 25 6 2.7367 -11.0755 1.7375 26 6 2.3195 -9.8752 2.3317 27 6 1.1100 -5.9499 0.9224 28 6 1.9328 -3.7312 -0.0005 29 1 -0.4850 0.8400 0.0004 30 1 -0.6002 -1.7622 0.6181 31 1 -0.5285 -2.4801 -1.0189 32 1 -1.3522 -4.3468 0.2471 33 1 -0.3844 -3.9050 1.6940 34 1 -0.5676 -5.6495 -1.3944 35 1 0.7023 -4.6093 -2.1222 36 1 2.4388 -6.2144 -1.6863 37 1 1.0647 -7.3011 -2.0536 38 1 1.2676 -6.7802 2.8392 39 1 1.7015 -8.1314 5.0228 40 1 2.5878 -10.7304 5.5554 41 1 3.3102 -12.8157 4.5606 42 1 3.4139 -13.0572 2.0901 43 1 2.7766 -11.1668 0.6621 44 1 0.2367 -6.2325 1.5103 45 1 1.9456 -5.7206 1.5837 46 1 2.5730 -3.8507 0.8736 47 1 2.5140 -3.8774 -0.9110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041464616.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:05 Heat of formation + Delta-G solvation = 67.825611 kcal Electronic energy + Delta-G solvation = -29257.256156 eV Core-core repulsion = 25406.429523 eV Total energy + Delta-G solvation = -3850.826632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.25733 -41.36831 -39.52400 -37.52904 -37.06524 -34.43673 -33.99278 -32.16833 -31.33720 -30.55549 -29.75674 -28.88851 -27.38716 -25.59611 -24.79116 -24.34253 -22.86015 -22.35583 -22.16523 -20.41998 -20.09474 -18.82316 -18.60824 -17.38435 -17.19127 -16.95177 -16.78212 -16.68098 -16.33696 -15.94198 -15.88047 -15.55519 -15.28052 -15.03721 -14.49290 -14.28466 -14.10452 -13.92945 -13.63247 -13.53012 -13.45917 -13.00580 -12.94560 -12.80042 -12.72435 -12.57076 -12.52411 -12.34535 -12.26714 -11.96814 -11.74260 -11.48015 -11.43567 -11.35727 -11.21364 -10.90137 -10.69964 -9.67684 -9.65048 -8.83955 -8.34449 -7.74404 -5.17626 -0.23437 0.25009 1.32546 1.48293 1.48766 1.58985 1.65365 2.11615 2.32347 2.51477 2.70014 3.32736 3.45726 3.52352 3.63951 3.67635 3.83673 3.86039 3.95785 4.03404 4.06439 4.24423 4.27330 4.28063 4.34216 4.43757 4.58740 4.69861 4.74520 4.78090 4.81454 4.86618 4.88985 4.92195 4.93441 5.09337 5.12109 5.21587 5.22846 5.31681 5.33410 5.35440 5.42613 5.50564 5.68881 5.71021 5.86830 5.87574 6.30793 6.35483 6.57537 7.15072 7.24024 7.81766 8.45933 9.27428 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021194 B = 0.002499 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.788189 B =11201.405136 C =11812.199686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.066 4.066 3 Si 0.976 3.024 4 H -0.269 1.269 5 H -0.294 1.294 6 H -0.290 1.290 7 C -0.234 4.234 8 H 0.077 0.923 9 N -0.624 5.624 10 C 0.157 3.843 11 C -0.113 4.113 12 C -0.073 4.073 13 C -0.106 4.106 14 C 0.112 3.888 15 N -0.613 5.613 16 C 0.600 3.400 17 O -0.599 6.599 18 C -0.282 4.282 19 C -0.125 4.125 20 C -0.060 4.060 21 N -0.341 5.341 22 C 0.049 3.951 23 C -0.145 4.145 24 C -0.094 4.094 25 C -0.128 4.128 26 C 0.098 3.902 27 C 0.126 3.874 28 C 0.150 3.850 29 H 0.246 0.754 30 H 0.071 0.929 31 H -0.012 1.012 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.172 0.828 39 H 0.211 0.789 40 H 0.206 0.794 41 H 0.190 0.810 42 H 0.163 0.837 43 H 0.132 0.868 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.028 0.972 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.870 -24.817 12.037 27.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.805 3.195 4 H -0.194 1.194 5 H -0.221 1.221 6 H -0.217 1.217 7 C -0.364 4.364 8 H 0.095 0.905 9 N -0.350 5.350 10 C 0.032 3.968 11 C -0.152 4.152 12 C -0.074 4.074 13 C -0.144 4.144 14 C -0.010 4.010 15 N -0.345 5.345 16 C 0.394 3.606 17 O -0.483 6.483 18 C -0.291 4.291 19 C -0.146 4.146 20 C -0.184 4.184 21 N -0.004 5.004 22 C -0.072 4.072 23 C -0.165 4.165 24 C -0.115 4.115 25 C -0.147 4.147 26 C -0.013 4.013 27 C 0.003 3.997 28 C 0.025 3.975 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.006 0.994 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.189 0.811 39 H 0.228 0.772 40 H 0.223 0.777 41 H 0.207 0.793 42 H 0.181 0.819 43 H 0.150 0.850 44 H 0.111 0.889 45 H 0.096 0.904 46 H 0.046 0.954 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 2.998 -25.168 11.864 27.985 hybrid contribution 0.405 1.454 -0.737 1.679 sum 3.403 -23.714 11.127 26.415 Atomic orbital electron populations 1.70051 1.06038 1.24846 1.58784 1.25562 0.96617 1.00710 1.02948 0.85035 0.78040 0.79687 0.76722 1.19401 1.22150 1.21670 1.19445 0.90884 0.83863 1.42174 0.90526 1.44913 1.02801 1.00580 1.86729 1.21748 0.83737 0.94727 0.96559 1.22719 0.96632 0.95276 1.00569 1.21426 0.96390 0.93550 0.96081 1.22619 0.99817 0.95649 0.96294 1.22301 0.99547 0.95779 0.83417 1.48369 1.68023 1.09509 1.08642 1.17040 0.75492 0.80170 0.87848 1.90705 1.54992 1.48555 1.54090 1.19251 1.21558 0.95904 0.92417 1.21848 1.01434 1.00635 0.90668 1.22312 1.11718 0.82694 1.01693 1.41840 1.41180 1.11437 1.05977 1.22595 0.99872 0.85898 0.98815 1.21326 1.01637 0.98053 0.95445 1.21580 0.96879 0.99008 0.94057 1.20833 1.01164 0.91195 1.01469 1.18790 1.03477 0.95715 0.83303 1.22219 1.00894 0.84417 0.92125 1.21259 0.94022 0.84501 0.97724 0.94379 0.91068 0.99448 0.89463 0.90660 0.89182 0.90624 0.91979 0.90575 0.81110 0.77182 0.77722 0.79311 0.81927 0.85048 0.88859 0.90355 0.95396 0.96425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.89 10.10 21.65 0.22 -55.67 16 2 C -0.07 -3.72 5.49 84.86 0.47 -3.25 16 3 Si 0.98 45.66 29.55 68.60 2.03 47.69 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 7 C -0.23 -13.11 10.28 84.04 0.86 -12.24 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.62 -31.62 3.41 -693.03 -2.36 -33.98 16 10 C 0.16 7.48 5.83 86.93 0.51 7.99 16 11 C -0.11 -3.88 5.93 31.56 0.19 -3.70 16 12 C -0.07 -2.37 0.61 -51.86 -0.03 -2.40 16 13 C -0.11 -3.18 5.87 31.65 0.19 -2.99 16 14 C 0.11 3.39 6.91 87.01 0.60 3.99 16 15 N -0.61 -19.04 3.34 -817.54 -2.73 -21.77 16 16 C 0.60 20.55 7.80 86.31 0.67 21.22 16 17 O -0.60 -23.81 15.92 -4.60 -0.07 -23.88 16 18 C -0.28 -8.28 6.16 -19.76 -0.12 -8.40 16 19 C -0.13 -2.87 9.21 22.28 0.21 -2.66 16 20 C -0.06 -1.06 11.53 83.04 0.96 -0.10 16 21 N -0.34 -6.38 2.92 -346.29 -1.01 -7.40 16 22 C 0.05 0.51 10.89 83.19 0.91 1.42 16 23 C -0.15 -1.28 9.98 22.03 0.22 -1.06 16 24 C -0.09 -1.32 10.09 22.33 0.23 -1.09 16 25 C -0.13 -2.98 9.72 22.32 0.22 -2.76 16 26 C 0.10 2.55 6.70 39.43 0.26 2.82 16 27 C 0.13 3.47 4.23 86.14 0.36 3.83 16 28 C 0.15 6.10 6.39 86.14 0.55 6.65 16 29 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.07 3.89 5.89 -2.38 -0.01 3.88 16 31 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 32 H 0.09 2.58 7.78 -2.39 -0.02 2.56 16 33 H 0.07 2.42 8.09 -2.39 -0.02 2.40 16 34 H 0.09 2.44 7.82 -2.38 -0.02 2.42 16 35 H 0.08 2.48 7.94 -2.39 -0.02 2.46 16 36 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.08 2.28 7.99 -2.39 -0.02 2.27 16 38 H 0.17 3.49 4.54 -2.91 -0.01 3.47 16 39 H 0.21 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.21 0.33 8.06 -2.91 -0.02 0.31 16 41 H 0.19 0.08 8.06 -2.91 -0.02 0.05 16 42 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 43 H 0.13 3.55 7.08 -2.91 -0.02 3.53 16 44 H 0.09 2.23 6.67 -2.39 -0.02 2.22 16 45 H 0.08 2.12 6.19 -2.39 -0.01 2.11 16 46 H 0.03 1.12 7.44 -2.38 -0.02 1.11 16 47 H 0.02 0.74 7.78 -2.39 -0.02 0.72 16 Total: -1.00 -77.74 370.03 4.29 -73.45 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.99 Total: 14.30 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 7.24 Total: 7.26 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -5.89 Total: -118.82 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.07 Total: -23.88 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -77.74 4.29 -73.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041464616.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.278 kcal (2) G-P(sol) polarization free energy of solvation -77.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds