Wall clock time and date at job start Tue Mar 31 2020 22:49:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31615 * 1
3 3 Si 1.86803 * 119.99975 * 2 1
4 4 H 1.48500 * 109.46986 * 274.98755 * 3 2 1
5 5 H 1.48500 * 109.47208 * 34.98996 * 3 2 1
6 6 H 1.48500 * 109.47178 * 154.99080 * 3 2 1
7 7 C 1.38811 * 120.00178 * 180.02562 * 2 1 3
8 8 H 1.08004 * 120.00159 * 172.74343 * 7 2 1
9 9 N 1.36938 * 120.00147 * 352.74330 * 7 2 1
10 10 C 1.47435 * 126.05487 * 5.88152 * 9 7 2
11 11 C 1.54506 * 107.14460 * 181.66257 * 10 9 7
12 12 C 1.56029 * 102.61455 * 22.84394 * 11 10 9
13 13 H 1.08999 * 112.85419 * 202.93186 * 12 11 10
14 14 C 1.53093 * 106.39465 * 78.37952 * 12 11 10
15 15 C 1.53334 * 110.49453 * 195.29178 * 14 12 11
16 16 N 1.47151 * 107.71739 * 57.57363 * 15 14 12
17 17 C 1.34774 * 121.20919 * 122.68342 * 16 15 14
18 18 O 1.21787 * 119.99645 * 184.72268 * 17 16 15
19 19 C 1.46209 * 120.00701 * 4.72372 * 17 16 15
20 20 C 1.41746 * 126.79268 * 43.06846 * 19 17 16
21 21 C 1.34522 * 107.77172 * 179.71512 * 20 19 17
22 22 N 1.36954 * 109.60196 * 0.26168 * 21 20 19
23 23 C 1.36701 * 131.34576 * 180.02562 * 22 21 20
24 24 C 1.35007 * 120.75587 * 179.97438 * 23 22 21
25 25 C 1.40310 * 120.37648 * 359.97438 * 24 23 22
26 26 C 1.36338 * 119.45657 * 0.02562 * 25 24 23
27 27 C 1.36934 * 108.74491 * 0.02562 * 22 21 20
28 28 C 1.46749 * 117.57333 * 302.41888 * 16 15 14
29 29 C 1.46460 * 126.06380 * 185.92290 * 9 7 2
30 30 H 1.09008 * 108.42532 * 269.20020 * 29 9 7
31 31 H 0.97000 * 119.99778 * 0.02562 * 1 2 3
32 32 H 1.08998 * 109.90493 * 301.03598 * 10 9 7
33 33 H 1.08998 * 109.90295 * 62.10481 * 10 9 7
34 34 H 1.09008 * 110.78325 * 141.12384 * 11 10 9
35 35 H 1.09008 * 110.78286 * 264.37219 * 11 10 9
36 36 H 1.08997 * 109.25543 * 315.70324 * 14 12 11
37 37 H 1.09001 * 109.25591 * 75.17768 * 14 12 11
38 38 H 1.09003 * 109.91671 * 298.02193 * 15 14 12
39 39 H 1.08999 * 109.86119 * 177.09922 * 15 14 12
40 40 H 1.07992 * 126.11202 * 359.97438 * 20 19 17
41 41 H 1.07996 * 125.19688 * 180.26548 * 21 20 19
42 42 H 1.08002 * 119.62676 * 359.95542 * 23 22 21
43 43 H 1.07999 * 119.81261 * 179.97438 * 24 23 22
44 44 H 1.08001 * 120.26683 * 180.02562 * 25 24 23
45 45 H 1.08006 * 120.33910 * 179.97438 * 26 25 24
46 46 H 1.08998 * 109.22936 * 173.10041 * 28 16 15
47 47 H 1.08995 * 109.22672 * 292.46400 * 28 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.3922 2.1073 -1.3948
5 1 1.5043 2.6200 0.8028
6 1 3.5965 1.4121 0.5919
7 6 2.0102 -1.2021 -0.0005
8 1 3.0838 -1.2058 -0.1187
9 7 1.3338 -2.3834 0.1487
10 6 -0.1309 -2.5445 0.1973
11 6 -0.4168 -4.0467 0.4184
12 6 0.9091 -4.5542 1.0658
13 1 1.0606 -5.6257 0.9358
14 6 0.8626 -4.1291 2.5358
15 6 2.2546 -4.2358 3.1698
16 7 3.1700 -3.3924 2.3849
17 6 3.8704 -2.3964 2.9627
18 8 4.5555 -1.6575 2.2787
19 6 3.8080 -2.2030 4.4105
20 6 3.8579 -3.2121 5.4048
21 6 3.7766 -2.6103 6.6051
22 7 3.6703 -1.2557 6.4336
23 6 3.5632 -0.2365 7.3383
24 6 3.4696 1.0457 6.9261
25 6 3.4814 1.3535 5.5572
26 6 3.5877 0.3464 4.6444
27 6 3.6829 -0.9796 5.0924
28 6 3.2969 -3.6792 0.9513
29 6 1.9371 -3.7106 0.2893
30 1 2.0454 -4.1467 -0.7039
31 1 -0.4850 0.8401 -0.0004
32 1 -0.5409 -1.9633 1.0232
33 1 -0.5718 -2.2146 -0.7433
34 1 -1.2570 -4.1844 1.0992
35 1 -0.6040 -4.5486 -0.5309
36 1 0.5130 -3.0988 2.6011
37 1 0.1728 -4.7776 3.0759
38 1 2.5953 -5.2710 3.1456
39 1 2.2203 -3.8825 4.2003
40 1 3.9494 -4.2738 5.2300
41 1 3.7928 -3.1177 7.5582
42 1 3.5530 -0.4595 8.3950
43 1 3.3852 1.8389 7.6541
44 1 3.4069 2.3799 5.2295
45 1 3.5978 0.5671 3.5872
46 1 3.9062 -2.9061 0.4831
47 1 3.7823 -4.6462 0.8202
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001042149361.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:49:45
Heat of formation + Delta-G solvation = 85.424053 kcal
Electronic energy + Delta-G solvation = -31076.588146 eV
Core-core repulsion = 27226.524640 eV
Total energy + Delta-G solvation = -3850.063506 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-42.19572 -39.62589 -37.75882 -36.47858 -34.73963 -32.90816 -32.69316 -31.05348
-30.07256 -29.15148 -28.25867 -27.67628 -24.60822 -24.19034 -23.60361 -22.45106
-22.20203 -21.27879 -19.89358 -19.42031 -18.24545 -17.45926 -16.43295 -16.35999
-16.06864 -15.62093 -15.34215 -15.05049 -14.75147 -14.40608 -14.34316 -13.92386
-13.81724 -13.64330 -13.15046 -13.05183 -12.49855 -12.48484 -12.37627 -11.91327
-11.70079 -11.56897 -11.52940 -11.35260 -11.22124 -11.06290 -10.78855 -10.70053
-10.62294 -10.22990 -10.00061 -9.76502 -9.73406 -9.55548 -9.40792 -9.14007
-8.58020 -8.39825 -7.91193 -7.22886 -6.66116 -5.56412 -2.85867 0.83712
1.33174 2.60513 2.67764 3.40381 3.50474 3.56494 3.60147 3.66534
4.01545 4.45071 4.66669 4.76034 4.87960 4.94595 5.08740 5.19268
5.27969 5.32858 5.42996 5.50610 5.60819 5.69116 5.73019 5.75622
5.81361 5.86278 5.90591 5.97298 6.11037 6.17597 6.24152 6.25827
6.31267 6.39314 6.40484 6.45891 6.55019 6.62449 6.72044 6.76121
6.87951 6.94162 7.08636 7.25256 7.32527 7.68215 7.76041 8.00374
8.15557 8.39726 8.96864 9.38605 9.99811 10.64952 11.56600
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.010336 B = 0.005639 C = 0.004250
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2708.235291 B = 4964.309356 C = 6586.223125
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.925 5.925
2 C -0.008 4.008
3 Si 0.894 3.106
4 H -0.292 1.292
5 H -0.293 1.293
6 H -0.274 1.274
7 C -0.205 4.205
8 H 0.081 0.919
9 N -0.588 5.588
10 C 0.178 3.822
11 C -0.144 4.144
12 C -0.101 4.101
13 H 0.074 0.926
14 C -0.121 4.121
15 C 0.107 3.893
16 N -0.588 5.588
17 C 0.596 3.404
18 O -0.538 6.538
19 C -0.216 4.216
20 C -0.112 4.112
21 C -0.068 4.068
22 N -0.340 5.340
23 C 0.039 3.961
24 C -0.138 4.138
25 C -0.128 4.128
26 C -0.068 4.068
27 C 0.102 3.898
28 C 0.116 3.884
29 C 0.154 3.846
30 H 0.024 0.976
31 H 0.248 0.752
32 H 0.046 0.954
33 H 0.037 0.963
34 H 0.057 0.943
35 H 0.053 0.947
36 H 0.079 0.921
37 H 0.057 0.943
38 H 0.059 0.941
39 H 0.087 0.913
40 H 0.152 0.848
41 H 0.170 0.830
42 H 0.160 0.840
43 H 0.145 0.855
44 H 0.136 0.864
45 H 0.151 0.849
46 H 0.094 0.906
47 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.165 -7.617 15.902 18.117
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.574 5.574
2 C -0.203 4.203
3 Si 0.724 3.276
4 H -0.220 1.220
5 H -0.220 1.220
6 H -0.199 1.199
7 C -0.333 4.333
8 H 0.099 0.901
9 N -0.313 5.313
10 C 0.053 3.947
11 C -0.182 4.182
12 C -0.121 4.121
13 H 0.092 0.908
14 C -0.159 4.159
15 C -0.016 4.016
16 N -0.320 5.320
17 C 0.385 3.615
18 O -0.416 6.416
19 C -0.226 4.226
20 C -0.134 4.134
21 C -0.194 4.194
22 N -0.004 5.004
23 C -0.082 4.082
24 C -0.159 4.159
25 C -0.149 4.149
26 C -0.087 4.087
27 C -0.006 4.006
28 C -0.008 4.008
29 C 0.046 3.954
30 H 0.041 0.959
31 H 0.058 0.942
32 H 0.064 0.936
33 H 0.056 0.944
34 H 0.076 0.924
35 H 0.072 0.928
36 H 0.098 0.902
37 H 0.076 0.924
38 H 0.077 0.923
39 H 0.105 0.895
40 H 0.169 0.831
41 H 0.187 0.813
42 H 0.178 0.822
43 H 0.163 0.837
44 H 0.154 0.846
45 H 0.169 0.831
46 H 0.113 0.887
47 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 4.481 -6.906 15.759 17.780
hybrid contribution 0.152 0.910 0.086 0.927
sum 4.633 -5.996 15.845 17.564
Atomic orbital electron populations
1.69974 1.04807 1.24537 1.58102 1.24690 0.95478 0.97274 1.02875
0.86321 0.79550 0.84225 0.77462 1.22008 1.21956 1.19874 1.19019
0.91253 0.82171 1.40860 0.90111 1.44273 1.01302 1.00765 1.84938
1.21213 0.84511 0.88557 1.00418 1.23157 0.96096 0.99930 0.99029
1.22378 0.97075 0.97691 0.94980 0.90768 1.21896 0.95761 1.03056
0.95165 1.21907 0.89824 0.93855 0.96023 1.47565 1.42686 1.32905
1.08870 1.16904 0.79363 0.79639 0.85563 1.90806 1.42092 1.44296
1.64396 1.19442 1.18182 0.91438 0.93490 1.20966 1.02897 0.98836
0.90725 1.21575 1.17638 0.79868 1.00271 1.41435 1.45946 1.06626
1.06358 1.21569 1.04838 0.87094 0.94700 1.20737 1.03111 0.95024
0.96987 1.21067 1.01427 1.00042 0.92357 1.20873 0.96743 0.89138
1.01943 1.18555 1.05652 0.94436 0.81967 1.21340 0.98751 1.00288
0.80393 1.20705 0.91230 0.88287 0.95192 0.95860 0.94219 0.93564
0.94439 0.92443 0.92850 0.90223 0.92412 0.92290 0.89506 0.83066
0.81290 0.82248 0.83748 0.84638 0.83150 0.88728 0.92989
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -27.96 10.43 55.49 0.58 -27.38 16
2 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16
3 Si 0.89 23.50 29.56 -169.99 -5.02 18.48 16
4 H -0.29 -7.68 7.11 56.52 0.40 -7.27 16
5 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16
6 H -0.27 -7.25 7.11 56.52 0.40 -6.85 16
7 C -0.20 -5.85 9.64 -15.06 -0.15 -5.99 16
8 H 0.08 2.37 6.62 -52.48 -0.35 2.03 16
9 N -0.59 -14.92 3.20 -164.42 -0.53 -15.44 16
10 C 0.18 4.34 4.63 -2.74 -0.01 4.33 16
11 C -0.14 -2.68 6.33 -24.32 -0.15 -2.84 16
12 C -0.10 -1.74 3.68 -88.43 -0.33 -2.06 16
13 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16
14 C -0.12 -1.99 5.06 -26.51 -0.13 -2.12 16
15 C 0.11 1.62 5.76 -3.51 -0.02 1.60 16
16 N -0.59 -11.10 2.96 -175.50 -0.52 -11.62 16
17 C 0.60 12.49 7.55 -13.06 -0.10 12.39 16
18 O -0.54 -13.36 16.57 5.11 0.08 -13.27 16
19 C -0.22 -3.85 5.23 -104.46 -0.55 -4.40 16
20 C -0.11 -1.50 8.43 -39.56 -0.33 -1.83 16
21 C -0.07 -0.79 11.53 -16.58 -0.19 -0.98 16
22 N -0.34 -4.60 2.92 -60.81 -0.18 -4.78 16
23 C 0.04 0.41 10.89 -16.53 -0.18 0.23 16
24 C -0.14 -1.46 9.98 -39.95 -0.40 -1.86 16
25 C -0.13 -1.74 10.09 -39.49 -0.40 -2.14 16
26 C -0.07 -1.19 10.06 -39.50 -0.40 -1.59 16
27 C 0.10 1.77 6.72 -83.92 -0.56 1.21 16
28 C 0.12 2.26 5.69 -4.78 -0.03 2.24 16
29 C 0.15 3.18 2.97 -68.30 -0.20 2.98 16
30 H 0.02 0.50 8.14 -51.92 -0.42 0.07 16
31 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16
32 H 0.05 1.26 6.92 -51.93 -0.36 0.90 16
33 H 0.04 1.02 7.69 -51.93 -0.40 0.62 16
34 H 0.06 0.98 7.97 -51.92 -0.41 0.56 16
35 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16
36 H 0.08 1.66 6.85 -51.93 -0.36 1.30 16
37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
39 H 0.09 1.24 4.76 -51.93 -0.25 0.99 16
40 H 0.15 1.62 7.54 -52.49 -0.40 1.23 16
41 H 0.17 1.29 8.06 -52.49 -0.42 0.86 16
42 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16
43 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16
44 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16
45 H 0.15 3.04 8.06 -52.48 -0.42 2.61 16
46 H 0.09 2.16 5.57 -51.93 -0.29 1.87 16
47 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16
LS Contribution 368.03 15.07 5.55 5.55
Total: -1.00 -35.51 368.03 -10.86 -46.37
By element:
Atomic # 1 Polarization: 9.89 SS G_CDS: -6.59 Total: 3.29 kcal
Atomic # 6 Polarization: 3.04 SS G_CDS: -4.22 Total: -1.19 kcal
Atomic # 7 Polarization: -58.58 SS G_CDS: -0.64 Total: -59.23 kcal
Atomic # 8 Polarization: -13.36 SS G_CDS: 0.08 Total: -13.27 kcal
Atomic # 14 Polarization: 23.50 SS G_CDS: -5.02 Total: 18.48 kcal
Total LS contribution 5.55 Total: 5.55 kcal
Total: -35.51 -10.86 -46.37 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001042149361.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.793 kcal
(2) G-P(sol) polarization free energy of solvation -35.512 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.281 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.857 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.369 kcal
(6) G-S(sol) free energy of system = (1) + (5) 85.424 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds