Wall clock time and date at job start Tue Mar 31 2020 22:49:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86798 * 120.00219 * 2 1
4 4 H 1.48496 * 109.47148 * 240.00417 * 3 2 1
5 5 H 1.48503 * 109.47038 * 0.02562 * 3 2 1
6 6 H 1.48502 * 109.47062 * 120.00317 * 3 2 1
7 7 C 1.38810 * 119.99687 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00140 * 179.97438 * 7 2 1
9 9 N 1.36940 * 119.99988 * 359.97438 * 7 2 1
10 10 C 1.48378 * 126.56336 * 359.97299 * 9 7 2
11 11 C 1.57545 * 107.17616 * 174.40214 * 10 9 7
12 12 C 1.53427 * 100.73256 * 337.62964 * 11 10 9
13 13 H 1.08998 * 111.14522 * 281.50962 * 12 11 10
14 14 C 1.45025 * 126.56032 * 179.97438 * 9 7 2
15 15 H 1.09007 * 108.25699 * 96.07092 * 14 9 7
16 16 C 1.51081 * 118.61000 * 330.85081 * 14 9 7
17 17 C 1.53867 * 107.34639 * 176.49361 * 16 14 9
18 18 C 1.52726 * 111.52316 * 56.92275 * 17 16 14
19 19 N 1.45724 * 116.37620 * 153.03992 * 12 11 10
20 20 C 1.34779 * 122.22634 * 9.05354 * 19 12 11
21 21 O 1.21774 * 119.99857 * 354.59489 * 20 19 12
22 22 C 1.46211 * 120.00056 * 174.59574 * 20 19 12
23 23 C 1.41740 * 126.79729 * 322.01842 * 22 20 19
24 24 C 1.34516 * 107.77127 * 179.82767 * 23 22 20
25 25 N 1.36956 * 109.60607 * 0.44197 * 24 23 22
26 26 C 1.36703 * 131.34975 * 179.74033 * 25 24 23
27 27 C 1.35000 * 120.75673 * 179.97438 * 26 25 24
28 28 C 1.40306 * 120.37689 * 359.97438 * 27 26 25
29 29 C 1.36336 * 119.45876 * 0.06731 * 28 27 26
30 30 C 1.36936 * 108.73737 * 359.71846 * 25 24 23
31 31 H 0.96999 * 119.99962 * 359.97438 * 1 2 3
32 32 H 1.09002 * 109.96259 * 293.87918 * 10 9 7
33 33 H 1.09001 * 109.96318 * 55.08025 * 10 9 7
34 34 H 1.08997 * 111.87106 * 219.66363 * 11 10 9
35 35 H 1.09003 * 110.97990 * 95.21860 * 11 10 9
36 36 H 1.09001 * 109.88792 * 57.02853 * 16 14 9
37 37 H 1.09005 * 109.94256 * 295.98277 * 16 14 9
38 38 H 1.08999 * 109.06866 * 296.40490 * 17 16 14
39 39 H 1.09003 * 109.01981 * 177.41491 * 17 16 14
40 40 H 1.08997 * 109.16062 * 191.05831 * 18 17 16
41 41 H 1.09008 * 109.11380 * 71.84600 * 18 17 16
42 42 H 1.07999 * 126.10907 * 359.96932 * 23 22 20
43 43 H 1.08001 * 125.19610 * 180.14764 * 24 23 22
44 44 H 1.08000 * 119.62077 * 359.97438 * 26 25 24
45 45 H 1.08002 * 119.81057 * 180.02562 * 27 26 25
46 46 H 1.07999 * 120.27103 * 180.02562 * 28 27 26
47 47 H 1.08009 * 120.34125 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.1039 1.6964 -1.2125
5 1 1.2853 2.7464 0.0006
6 1 3.1041 1.6963 1.2125
7 6 2.0102 -1.2022 -0.0005
8 1 3.0902 -1.2023 -0.0010
9 7 1.3254 -2.3881 -0.0005
10 6 -0.1486 -2.5576 0.0006
11 6 -0.4398 -4.0989 -0.1467
12 6 0.8704 -4.5774 -0.7858
13 1 0.8936 -4.3510 -1.8517
14 6 1.9022 -3.7187 -0.0016
15 1 1.9384 -4.0760 1.0276
16 6 3.2523 -3.9214 -0.6488
17 6 3.6521 -5.3904 -0.4255
18 6 2.6003 -6.3480 -0.9816
19 7 1.2439 -5.9636 -0.5363
20 6 0.4080 -6.8372 0.0592
21 8 -0.6620 -6.4544 0.4968
22 6 0.7857 -8.2446 0.1796
23 6 1.4794 -9.0226 -0.7808
24 6 1.6281 -10.2607 -0.2764
25 7 1.0529 -10.3233 0.9650
26 6 0.9435 -11.3518 1.8588
27 6 0.3214 -11.1736 3.0436
28 6 -0.2243 -9.9249 3.3777
29 6 -0.1228 -8.8910 2.4948
30 6 0.5276 -9.0957 1.2688
31 1 -0.4850 0.8400 0.0004
32 1 -0.5650 -2.1885 0.9379
33 1 -0.5860 -2.0171 -0.8389
34 1 -1.2878 -4.2909 -0.8041
35 1 -0.5908 -4.5624 0.8282
36 1 3.9877 -3.2628 -0.1867
37 1 3.1877 -3.7131 -1.7168
38 1 3.7670 -5.5697 0.6435
39 1 4.6037 -5.5790 -0.9225
40 1 2.8175 -7.3584 -0.6351
41 1 2.6392 -6.3274 -2.0708
42 1 1.8283 -8.6816 -1.7443
43 1 2.1211 -11.0814 -0.7761
44 1 1.3595 -12.3180 1.6144
45 1 0.2441 -11.9966 3.7386
46 1 -0.7213 -9.7841 4.3261
47 1 -0.5382 -7.9238 2.7372
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001049589343.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:49:28
Heat of formation + Delta-G solvation = 90.789860 kcal
Electronic energy + Delta-G solvation = -30007.957846 eV
Core-core repulsion = 26158.127018 eV
Total energy + Delta-G solvation = -3849.830828 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-42.45029 -39.97923 -37.51909 -36.73596 -35.20620 -33.18329 -32.44407 -32.02211
-30.24730 -29.04807 -28.09171 -27.86096 -24.81403 -24.39642 -23.87171 -22.59407
-21.74192 -21.18180 -20.61107 -19.56218 -18.85070 -17.54173 -16.58118 -16.51177
-16.13887 -15.74873 -15.43007 -15.27398 -14.84435 -14.65848 -14.40831 -14.24596
-14.03177 -13.74352 -13.23503 -13.13904 -12.91665 -12.62620 -12.29076 -12.10859
-12.00482 -11.84015 -11.71204 -11.61978 -11.43091 -11.01518 -10.77588 -10.64388
-10.50322 -10.38004 -10.31638 -10.04522 -9.87311 -9.71038 -9.52185 -8.88645
-8.79290 -8.49348 -8.06469 -7.49243 -6.73821 -5.62329 -2.96211 0.56403
1.06538 2.33350 2.43057 3.13669 3.35224 3.45323 3.49413 3.50878
3.68276 4.22300 4.53761 4.56292 4.59878 4.68829 4.85932 5.00017
5.03725 5.14220 5.25305 5.43117 5.46807 5.49001 5.54488 5.57809
5.65424 5.71795 5.80689 5.90694 5.95700 5.97159 6.05642 6.13785
6.14452 6.21384 6.35413 6.40493 6.51906 6.53266 6.65648 6.70183
6.83802 6.92272 7.03408 7.03832 7.35138 7.66499 7.76356 7.89366
7.95898 8.33692 8.67842 9.27505 9.91307 10.60763 11.49579
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.021798 B = 0.002913 C = 0.002758
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1284.217636 B = 9608.622275 C =10151.383819
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.920 5.920
2 C -0.008 4.008
3 Si 0.910 3.090
4 H -0.286 1.286
5 H -0.291 1.291
6 H -0.286 1.286
7 C -0.224 4.224
8 H 0.078 0.922
9 N -0.594 5.594
10 C 0.174 3.826
11 C -0.134 4.134
12 C 0.118 3.882
13 H 0.077 0.923
14 C 0.159 3.841
15 H 0.018 0.982
16 C -0.115 4.115
17 C -0.129 4.129
18 C 0.107 3.893
19 N -0.594 5.594
20 C 0.593 3.407
21 O -0.539 6.539
22 C -0.224 4.224
23 C -0.109 4.109
24 C -0.066 4.066
25 N -0.340 5.340
26 C 0.044 3.956
27 C -0.142 4.142
28 C -0.123 4.123
29 C -0.076 4.076
30 C 0.101 3.899
31 H 0.252 0.748
32 H 0.038 0.962
33 H 0.055 0.945
34 H 0.059 0.941
35 H 0.088 0.912
36 H 0.065 0.935
37 H 0.063 0.937
38 H 0.061 0.939
39 H 0.070 0.930
40 H 0.087 0.913
41 H 0.062 0.938
42 H 0.154 0.846
43 H 0.172 0.828
44 H 0.162 0.838
45 H 0.146 0.854
46 H 0.137 0.863
47 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.767 -25.876 1.260 26.342
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.568 5.568
2 C -0.205 4.205
3 Si 0.740 3.260
4 H -0.212 1.212
5 H -0.217 1.217
6 H -0.213 1.213
7 C -0.352 4.352
8 H 0.095 0.905
9 N -0.319 5.319
10 C 0.049 3.951
11 C -0.173 4.173
12 C 0.014 3.986
13 H 0.095 0.905
14 C 0.050 3.950
15 H 0.036 0.964
16 C -0.154 4.154
17 C -0.168 4.168
18 C -0.016 4.016
19 N -0.326 5.326
20 C 0.382 3.618
21 O -0.418 6.418
22 C -0.233 4.233
23 C -0.131 4.131
24 C -0.191 4.191
25 N -0.004 5.004
26 C -0.077 4.077
27 C -0.162 4.162
28 C -0.144 4.144
29 C -0.095 4.095
30 C -0.007 4.007
31 H 0.063 0.937
32 H 0.056 0.944
33 H 0.073 0.927
34 H 0.078 0.922
35 H 0.106 0.894
36 H 0.084 0.916
37 H 0.082 0.918
38 H 0.080 0.920
39 H 0.089 0.911
40 H 0.106 0.894
41 H 0.081 0.919
42 H 0.172 0.828
43 H 0.189 0.811
44 H 0.179 0.821
45 H 0.164 0.836
46 H 0.155 0.845
47 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges 4.185 -25.663 1.542 26.048
hybrid contribution 0.626 0.776 -0.121 1.005
sum 4.810 -24.887 1.421 25.387
Atomic orbital electron populations
1.69941 1.04849 1.25066 1.56926 1.24797 0.95661 0.97555 1.02451
0.86235 0.78452 0.83476 0.77800 1.21243 1.21661 1.21278 1.18942
0.90274 0.82263 1.43762 0.90459 1.44076 1.01859 0.99373 1.86566
1.22089 0.83508 0.88617 1.00870 1.23389 0.94279 0.97818 1.01806
1.22390 0.98562 0.78570 0.99069 0.90536 1.20774 0.91465 0.87099
0.95701 0.96420 1.21428 0.98504 0.94246 1.01174 1.21906 0.97664
0.95736 1.01489 1.21883 0.81717 0.99180 0.98846 1.47784 1.14425
1.10907 1.59480 1.17014 0.83542 0.83714 0.77481 1.90791 1.23461
1.78797 1.48729 1.19498 1.12559 0.94725 0.96559 1.21070 0.99918
0.92394 0.99706 1.21648 1.10599 1.00747 0.86127 1.41475 1.36670
1.08818 1.13418 1.21636 1.03077 0.92308 0.90643 1.20760 1.00343
0.99025 0.96094 1.21086 1.00623 0.92411 1.00277 1.20808 0.97031
1.01058 0.90560 1.18585 1.01209 0.84562 0.96372 0.93735 0.94383
0.92710 0.92191 0.89404 0.91638 0.91825 0.92004 0.91138 0.89439
0.91949 0.82829 0.81109 0.82108 0.83628 0.84518 0.83171
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -27.77 10.46 55.49 0.58 -27.19 16
2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16
3 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16
4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
7 C -0.22 -6.31 9.92 -15.06 -0.15 -6.46 16
8 H 0.08 2.08 7.26 -52.49 -0.38 1.70 16
9 N -0.59 -15.67 3.35 -161.96 -0.54 -16.21 16
10 C 0.17 4.53 5.53 -0.53 0.00 4.53 16
11 C -0.13 -2.98 5.26 -24.03 -0.13 -3.11 16
12 C 0.12 2.37 3.26 -66.82 -0.22 2.15 16
13 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16
14 C 0.16 3.45 2.59 -68.38 -0.18 3.28 16
15 H 0.02 0.43 8.08 -51.93 -0.42 0.01 16
16 C -0.11 -2.06 5.41 -27.25 -0.15 -2.20 16
17 C -0.13 -1.77 5.94 -26.42 -0.16 -1.92 16
18 C 0.11 1.39 5.44 -3.44 -0.02 1.37 16
19 N -0.59 -10.06 2.91 -165.70 -0.48 -10.55 16
20 C 0.59 10.50 7.57 -13.06 -0.10 10.40 16
21 O -0.54 -11.20 13.55 5.12 0.07 -11.13 16
22 C -0.22 -3.25 5.39 -104.46 -0.56 -3.81 16
23 C -0.11 -1.20 8.44 -39.56 -0.33 -1.53 16
24 C -0.07 -0.61 11.53 -16.58 -0.19 -0.80 16
25 N -0.34 -3.56 2.92 -60.81 -0.18 -3.73 16
26 C 0.04 0.33 10.89 -16.53 -0.18 0.15 16
27 C -0.14 -1.01 9.98 -39.95 -0.40 -1.41 16
28 C -0.12 -1.12 10.09 -39.49 -0.40 -1.52 16
29 C -0.08 -0.94 9.97 -39.50 -0.39 -1.33 16
30 C 0.10 1.36 6.70 -83.92 -0.56 0.80 16
31 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16
32 H 0.04 1.08 7.81 -51.93 -0.41 0.68 16
33 H 0.05 1.55 7.18 -51.93 -0.37 1.17 16
34 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16
35 H 0.09 2.05 6.03 -51.93 -0.31 1.73 16
36 H 0.06 1.22 7.66 -51.93 -0.40 0.82 16
37 H 0.06 1.14 8.12 -51.93 -0.42 0.71 16
38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
40 H 0.09 0.99 4.87 -51.93 -0.25 0.74 16
41 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16
42 H 0.15 1.38 7.23 -52.49 -0.38 1.00 16
43 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16
44 H 0.16 0.62 8.06 -52.49 -0.42 0.19 16
45 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16
46 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16
47 H 0.15 2.02 7.90 -52.48 -0.41 1.60 16
LS Contribution 366.84 15.07 5.53 5.53
Total: -1.00 -34.89 366.84 -10.96 -45.85
By element:
Atomic # 1 Polarization: 8.45 SS G_CDS: -6.70 Total: 1.75 kcal
Atomic # 6 Polarization: 2.45 SS G_CDS: -4.21 Total: -1.76 kcal
Atomic # 7 Polarization: -57.05 SS G_CDS: -0.62 Total: -57.68 kcal
Atomic # 8 Polarization: -11.20 SS G_CDS: 0.07 Total: -11.13 kcal
Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal
Total LS contribution 5.53 Total: 5.53 kcal
Total: -34.89 -10.96 -45.85 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049589343.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 136.642 kcal
(2) G-P(sol) polarization free energy of solvation -34.894 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.748 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.959 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.852 kcal
(6) G-S(sol) free energy of system = (1) + (5) 90.790 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds