Wall clock time and date at job start Tue Mar 31 2020 22:49:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31622 * 1
3 3 Si 1.86798 * 120.00219 * 2 1
4 4 H 1.48496 * 109.47148 * 240.00417 * 3 2 1
5 5 H 1.48503 * 109.47038 * 0.02562 * 3 2 1
6 6 H 1.48502 * 109.47062 * 120.00317 * 3 2 1
7 7 C 1.38810 * 119.99687 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00140 * 179.97438 * 7 2 1
9 9 N 1.36940 * 119.99988 * 359.97438 * 7 2 1
10 10 C 1.48378 * 126.56336 * 359.97299 * 9 7 2
11 11 C 1.57545 * 107.17616 * 174.40214 * 10 9 7
12 12 C 1.53427 * 100.73256 * 337.62964 * 11 10 9
13 13 H 1.08998 * 111.14522 * 281.50962 * 12 11 10
14 14 C 1.45025 * 126.56032 * 179.97438 * 9 7 2
15 15 H 1.09007 * 108.25699 * 96.07092 * 14 9 7
16 16 C 1.51081 * 118.61000 * 330.85081 * 14 9 7
17 17 C 1.53867 * 107.34639 * 176.49361 * 16 14 9
18 18 C 1.52726 * 111.52316 * 56.92275 * 17 16 14
19 19 N 1.45724 * 116.37620 * 153.03992 * 12 11 10
20 20 C 1.34779 * 122.22634 * 9.05354 * 19 12 11
21 21 O 1.21774 * 119.99857 * 354.59489 * 20 19 12
22 22 C 1.46211 * 120.00056 * 174.59574 * 20 19 12
23 23 C 1.41740 * 126.79729 * 322.01842 * 22 20 19
24 24 C 1.34516 * 107.77127 * 179.82767 * 23 22 20
25 25 N 1.36956 * 109.60607 * 0.44197 * 24 23 22
26 26 C 1.36703 * 131.34975 * 179.74033 * 25 24 23
27 27 C 1.35000 * 120.75673 * 179.97438 * 26 25 24
28 28 C 1.40306 * 120.37689 * 359.97438 * 27 26 25
29 29 C 1.36336 * 119.45876 * 0.06731 * 28 27 26
30 30 C 1.36936 * 108.73737 * 359.71846 * 25 24 23
31 31 H 0.96999 * 119.99962 * 359.97438 * 1 2 3
32 32 H 1.09002 * 109.96259 * 293.87918 * 10 9 7
33 33 H 1.09001 * 109.96318 * 55.08025 * 10 9 7
34 34 H 1.08997 * 111.87106 * 219.66363 * 11 10 9
35 35 H 1.09003 * 110.97990 * 95.21860 * 11 10 9
36 36 H 1.09001 * 109.88792 * 57.02853 * 16 14 9
37 37 H 1.09005 * 109.94256 * 295.98277 * 16 14 9
38 38 H 1.08999 * 109.06866 * 296.40490 * 17 16 14
39 39 H 1.09003 * 109.01981 * 177.41491 * 17 16 14
40 40 H 1.08997 * 109.16062 * 191.05831 * 18 17 16
41 41 H 1.09008 * 109.11380 * 71.84600 * 18 17 16
42 42 H 1.07999 * 126.10907 * 359.96932 * 23 22 20
43 43 H 1.08001 * 125.19610 * 180.14764 * 24 23 22
44 44 H 1.08000 * 119.62077 * 359.97438 * 26 25 24
45 45 H 1.08002 * 119.81057 * 180.02562 * 27 26 25
46 46 H 1.07999 * 120.27103 * 180.02562 * 28 27 26
47 47 H 1.08009 * 120.34125 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.1039 1.6964 -1.2125
5 1 1.2853 2.7464 0.0006
6 1 3.1041 1.6963 1.2125
7 6 2.0102 -1.2022 -0.0005
8 1 3.0902 -1.2023 -0.0010
9 7 1.3254 -2.3881 -0.0005
10 6 -0.1486 -2.5576 0.0006
11 6 -0.4398 -4.0989 -0.1467
12 6 0.8704 -4.5774 -0.7858
13 1 0.8936 -4.3510 -1.8517
14 6 1.9022 -3.7187 -0.0016
15 1 1.9384 -4.0760 1.0276
16 6 3.2523 -3.9214 -0.6488
17 6 3.6521 -5.3904 -0.4255
18 6 2.6003 -6.3480 -0.9816
19 7 1.2439 -5.9636 -0.5363
20 6 0.4080 -6.8372 0.0592
21 8 -0.6620 -6.4544 0.4968
22 6 0.7857 -8.2446 0.1796
23 6 1.4794 -9.0226 -0.7808
24 6 1.6281 -10.2607 -0.2764
25 7 1.0529 -10.3233 0.9650
26 6 0.9435 -11.3518 1.8588
27 6 0.3214 -11.1736 3.0436
28 6 -0.2243 -9.9249 3.3777
29 6 -0.1228 -8.8910 2.4948
30 6 0.5276 -9.0957 1.2688
31 1 -0.4850 0.8400 0.0004
32 1 -0.5650 -2.1885 0.9379
33 1 -0.5860 -2.0171 -0.8389
34 1 -1.2878 -4.2909 -0.8041
35 1 -0.5908 -4.5624 0.8282
36 1 3.9877 -3.2628 -0.1867
37 1 3.1877 -3.7131 -1.7168
38 1 3.7670 -5.5697 0.6435
39 1 4.6037 -5.5790 -0.9225
40 1 2.8175 -7.3584 -0.6351
41 1 2.6392 -6.3274 -2.0708
42 1 1.8283 -8.6816 -1.7443
43 1 2.1211 -11.0814 -0.7761
44 1 1.3595 -12.3180 1.6144
45 1 0.2441 -11.9966 3.7386
46 1 -0.7213 -9.7841 4.3261
47 1 -0.5382 -7.9238 2.7372
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049589343.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:49:28
Heat of formation + Delta-G solvation = 70.051331 kcal
Electronic energy + Delta-G solvation = -30008.857136 eV
Core-core repulsion = 26158.127018 eV
Total energy + Delta-G solvation = -3850.730118 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-43.22756 -41.44151 -39.03862 -37.53602 -36.78910 -34.36563 -33.91215 -33.67188
-31.19749 -30.68231 -29.62332 -28.91205 -26.48779 -26.07977 -24.61568 -23.76635
-22.88941 -22.42084 -22.11045 -21.32374 -20.01525 -18.72298 -18.19315 -17.44027
-17.07520 -16.98149 -16.77146 -16.34325 -16.32702 -16.08026 -15.72822 -15.44666
-15.28663 -15.21348 -14.76333 -14.29342 -14.22740 -13.93169 -13.72354 -13.59749
-13.32977 -13.16497 -12.87088 -12.80389 -12.67440 -12.51678 -12.31922 -12.21240
-12.10592 -11.93579 -11.77594 -11.69056 -11.56091 -11.39295 -11.31604 -10.76537
-10.30782 -9.56723 -9.50550 -8.91416 -8.29612 -7.83421 -5.21050 -0.18427
0.31295 1.41736 1.45042 1.49676 1.55769 1.68840 2.09642 2.31429
2.51134 2.64459 3.34524 3.40459 3.60745 3.75515 3.87699 3.96636
3.98509 4.01576 4.07720 4.11427 4.18687 4.26263 4.29078 4.34766
4.50380 4.56567 4.58741 4.68064 4.78568 4.83270 4.89452 4.91664
4.98638 5.05231 5.10590 5.15415 5.22646 5.28370 5.34310 5.40228
5.45579 5.48236 5.59086 5.62994 5.70048 5.78571 5.89475 6.17875
6.37562 6.63662 7.05119 7.35213 7.75206 8.46467 9.28335
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.021798 B = 0.002913 C = 0.002758
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1284.217636 B = 9608.622275 C =10151.383819
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.956 5.956
2 C -0.071 4.071
3 Si 0.982 3.018
4 H -0.271 1.271
5 H -0.297 1.297
6 H -0.278 1.278
7 C -0.235 4.235
8 H 0.090 0.910
9 N -0.612 5.612
10 C 0.185 3.815
11 C -0.117 4.117
12 C 0.133 3.867
13 H 0.080 0.920
14 C 0.155 3.845
15 H -0.008 1.008
16 C -0.109 4.109
17 C -0.119 4.119
18 C 0.103 3.897
19 N -0.596 5.596
20 C 0.586 3.414
21 O -0.589 6.589
22 C -0.271 4.271
23 C -0.114 4.114
24 C -0.051 4.051
25 N -0.342 5.342
26 C 0.054 3.946
27 C -0.149 4.149
28 C -0.098 4.098
29 C -0.133 4.133
30 C 0.087 3.913
31 H 0.246 0.754
32 H -0.003 1.003
33 H 0.027 0.973
34 H 0.063 0.937
35 H 0.072 0.928
36 H 0.056 0.944
37 H 0.068 0.932
38 H 0.052 0.948
39 H 0.113 0.887
40 H 0.113 0.887
41 H 0.089 0.911
42 H 0.174 0.826
43 H 0.218 0.782
44 H 0.210 0.790
45 H 0.188 0.812
46 H 0.155 0.845
47 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.061 -30.403 0.416 31.456
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.605 5.605
2 C -0.263 4.263
3 Si 0.810 3.190
4 H -0.197 1.197
5 H -0.223 1.223
6 H -0.204 1.204
7 C -0.363 4.363
8 H 0.107 0.893
9 N -0.337 5.337
10 C 0.060 3.940
11 C -0.156 4.156
12 C 0.028 3.972
13 H 0.098 0.902
14 C 0.047 3.953
15 H 0.009 0.991
16 C -0.148 4.148
17 C -0.158 4.158
18 C -0.018 4.018
19 N -0.327 5.327
20 C 0.379 3.621
21 O -0.471 6.471
22 C -0.281 4.281
23 C -0.134 4.134
24 C -0.175 4.175
25 N -0.006 5.006
26 C -0.066 4.066
27 C -0.169 4.169
28 C -0.119 4.119
29 C -0.152 4.152
30 C -0.023 4.023
31 H 0.056 0.944
32 H 0.016 0.984
33 H 0.045 0.955
34 H 0.081 0.919
35 H 0.091 0.909
36 H 0.075 0.925
37 H 0.086 0.914
38 H 0.071 0.929
39 H 0.131 0.869
40 H 0.131 0.869
41 H 0.107 0.893
42 H 0.191 0.809
43 H 0.235 0.765
44 H 0.227 0.773
45 H 0.205 0.795
46 H 0.173 0.827
47 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 7.547 -30.241 0.675 31.176
hybrid contribution -0.444 1.994 0.307 2.066
sum 7.103 -28.247 0.982 29.143
Atomic orbital electron populations
1.70187 1.06586 1.25383 1.58357 1.25743 0.96574 1.01299 1.02724
0.85094 0.77046 0.78471 0.78374 1.19666 1.22291 1.20393 1.19399
0.91035 0.83098 1.42785 0.89272 1.44340 1.02010 1.00930 1.86418
1.21779 0.83916 0.90814 0.97516 1.23108 0.96121 0.94863 1.01493
1.21992 0.96014 0.80768 0.98453 0.90171 1.20924 0.94480 0.84946
0.94977 0.99082 1.21398 0.95357 0.97362 1.00665 1.21890 0.99700
0.92512 1.01674 1.22209 0.79040 1.00119 1.00384 1.47856 1.16124
1.09126 1.59604 1.17634 0.82883 0.85327 0.76301 1.90743 1.25613
1.79962 1.50782 1.19275 1.16450 0.93171 0.99157 1.21318 0.99551
0.92720 0.99860 1.22339 1.08840 1.01137 0.85144 1.41778 1.36189
1.08295 1.14332 1.22570 1.01300 0.92984 0.89764 1.21270 0.99630
0.98913 0.97043 1.21487 0.98222 0.92429 0.99811 1.20688 1.00769
1.01222 0.92481 1.18649 1.01368 0.85968 0.96303 0.94443 0.98437
0.95489 0.91862 0.90914 0.92515 0.91369 0.92874 0.86857 0.86932
0.89324 0.80891 0.76532 0.77291 0.79493 0.82689 0.86504
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -60.96 10.46 21.65 0.23 -60.74 16
2 C -0.07 -4.22 5.49 84.86 0.47 -3.75 16
3 Si 0.98 47.35 29.55 68.60 2.03 49.38 16
4 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16
5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16
6 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16
7 C -0.23 -13.67 9.92 84.03 0.83 -12.83 16
8 H 0.09 4.86 7.26 -2.91 -0.02 4.83 16
9 N -0.61 -34.12 3.35 -666.32 -2.23 -36.35 16
10 C 0.19 10.51 5.53 87.62 0.48 10.99 16
11 C -0.12 -5.67 5.26 32.34 0.17 -5.50 16
12 C 0.13 5.56 3.26 46.13 0.15 5.71 16
13 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16
14 C 0.15 7.02 2.59 45.49 0.12 7.14 16
15 H -0.01 -0.41 8.08 -2.38 -0.02 -0.43 16
16 C -0.11 -3.85 5.41 30.26 0.16 -3.68 16
17 C -0.12 -2.99 5.94 30.80 0.18 -2.80 16
18 C 0.10 2.46 5.44 86.03 0.47 2.93 16
19 N -0.60 -20.52 2.91 -796.33 -2.32 -22.84 16
20 C 0.59 21.86 7.57 86.31 0.65 22.51 16
21 O -0.59 -26.79 13.55 -4.58 -0.06 -26.85 16
22 C -0.27 -7.88 5.39 -19.76 -0.11 -7.98 16
23 C -0.11 -2.18 8.44 22.28 0.19 -1.99 16
24 C -0.05 -0.70 11.53 83.04 0.96 0.25 16
25 N -0.34 -6.01 2.92 -346.30 -1.01 -7.02 16
26 C 0.05 0.54 10.89 83.19 0.91 1.45 16
27 C -0.15 -1.50 9.98 22.03 0.22 -1.28 16
28 C -0.10 -1.67 10.09 22.33 0.23 -1.44 16
29 C -0.13 -3.49 9.97 22.33 0.22 -3.26 16
30 C 0.09 2.33 6.70 39.43 0.26 2.59 16
31 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16
32 H 0.00 -0.17 7.81 -2.39 -0.02 -0.18 16
33 H 0.03 1.65 7.18 -2.39 -0.02 1.64 16
34 H 0.06 2.95 8.14 -2.39 -0.02 2.93 16
35 H 0.07 3.76 6.03 -2.39 -0.01 3.74 16
36 H 0.06 2.08 7.66 -2.39 -0.02 2.06 16
37 H 0.07 2.34 8.12 -2.38 -0.02 2.32 16
38 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16
39 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16
40 H 0.11 2.20 4.87 -2.39 -0.01 2.19 16
41 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16
42 H 0.17 2.45 7.23 -2.91 -0.02 2.43 16
43 H 0.22 0.90 8.06 -2.91 -0.02 0.87 16
44 H 0.21 0.05 8.06 -2.91 -0.02 0.03 16
45 H 0.19 0.34 8.06 -2.91 -0.02 0.32 16
46 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16
47 H 0.12 3.69 7.90 -2.91 -0.02 3.67 16
Total: -1.00 -86.03 366.84 4.17 -81.86
By element:
Atomic # 1 Polarization: 12.55 SS G_CDS: 0.98 Total: 13.52 kcal
Atomic # 6 Polarization: 2.47 SS G_CDS: 6.57 Total: 9.04 kcal
Atomic # 7 Polarization: -121.62 SS G_CDS: -5.34 Total: -126.96 kcal
Atomic # 8 Polarization: -26.79 SS G_CDS: -0.06 Total: -26.85 kcal
Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal
Total: -86.03 4.17 -81.86 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049589343.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 151.916 kcal
(2) G-P(sol) polarization free energy of solvation -86.035 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.881 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.865 kcal
(6) G-S(sol) free energy of system = (1) + (5) 70.051 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds