Wall clock time and date at job start Tue Mar 31 2020 22:14:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31610 * 1
3 3 Si 1.86806 * 120.00256 * 2 1
4 4 H 1.48506 * 109.46899 * 240.00303 * 3 2 1
5 5 H 1.48501 * 109.46780 * 359.97438 * 3 2 1
6 6 H 1.48493 * 109.47402 * 120.00048 * 3 2 1
7 7 C 1.38819 * 119.99997 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99982 * 179.97438 * 7 2 1
9 9 N 1.36931 * 119.99922 * 359.97438 * 7 2 1
10 10 C 1.48383 * 126.56284 * 359.97438 * 9 7 2
11 11 C 1.55465 * 106.97630 * 185.54312 * 10 9 7
12 12 C 1.53431 * 101.67001 * 22.59839 * 11 10 9
13 13 H 1.08998 * 111.75041 * 78.22625 * 12 11 10
14 14 C 1.45025 * 126.56057 * 179.97438 * 9 7 2
15 15 H 1.08997 * 108.26957 * 263.89807 * 14 9 7
16 16 C 1.51084 * 119.18419 * 28.78201 * 14 9 7
17 17 C 1.53873 * 107.34357 * 183.87096 * 16 14 9
18 18 C 1.53141 * 111.46925 * 302.92490 * 17 16 14
19 19 N 1.45726 * 116.37882 * 207.26186 * 12 11 10
20 20 C 1.34779 * 122.23139 * 350.09377 * 19 12 11
21 21 O 1.21610 * 119.99886 * 5.33886 * 20 19 12
22 22 C 1.47373 * 119.99938 * 185.33572 * 20 19 12
23 23 C 1.39324 * 120.34531 * 46.13786 * 22 20 19
24 24 C 1.38271 * 120.19747 * 179.70248 * 23 22 20
25 25 C 1.38060 * 120.88874 * 0.27090 * 24 23 22
26 26 C 1.38978 * 120.26484 * 359.97438 * 25 24 23
27 27 N 1.37801 * 133.37167 * 180.02562 * 26 25 24
28 28 H 0.96996 * 125.07056 * 0.02562 * 27 26 25
29 29 C 1.36543 * 109.85210 * 180.02562 * 27 26 25
30 30 C 1.34552 * 109.89840 * 0.02562 * 29 27 26
31 31 C 1.40667 * 119.52199 * 0.02792 * 26 25 24
32 32 H 0.97005 * 120.00152 * 0.02562 * 1 2 3
33 33 H 1.09003 * 109.96028 * 304.92536 * 10 9 7
34 34 H 1.08999 * 109.96100 * 66.12046 * 10 9 7
35 35 H 1.09002 * 110.99100 * 264.50305 * 11 10 9
36 36 H 1.08998 * 110.98992 * 140.69823 * 11 10 9
37 37 H 1.09004 * 109.88214 * 303.32771 * 16 14 9
38 38 H 1.08996 * 109.88585 * 64.40741 * 16 14 9
39 39 H 1.08997 * 109.06706 * 63.59701 * 17 16 14
40 40 H 1.09002 * 109.06642 * 182.61160 * 17 16 14
41 41 H 1.09000 * 109.32650 * 288.42036 * 18 17 16
42 42 H 1.08997 * 109.23866 * 169.08634 * 18 17 16
43 43 H 1.07998 * 119.89799 * 359.97438 * 23 22 20
44 44 H 1.08003 * 119.55636 * 180.25575 * 24 23 22
45 45 H 1.07999 * 119.86621 * 180.02562 * 25 24 23
46 46 H 1.08000 * 125.05182 * 180.02562 * 29 27 26
47 47 H 1.08001 * 126.49241 * 179.97438 * 30 29 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.1039 1.6964 -1.2126
5 1 1.2852 2.7465 -0.0006
6 1 3.1039 1.6964 1.2124
7 6 2.0102 -1.2022 0.0005
8 1 3.0902 -1.2022 0.0001
9 7 1.3255 -2.3881 0.0016
10 6 -0.1486 -2.5576 0.0028
11 6 -0.4303 -4.0797 0.1473
12 6 0.8717 -4.5767 0.7891
13 1 0.9050 -4.3584 1.8564
14 6 1.9024 -3.7186 0.0017
15 1 1.9366 -4.0764 -1.0273
16 6 3.2566 -3.9344 0.6359
17 6 3.6455 -5.4041 0.3981
18 6 2.5909 -6.3611 0.9611
19 7 1.2347 -5.9634 0.5266
20 6 0.3887 -6.8277 -0.0684
21 8 -0.6814 -6.4360 -0.4931
22 6 0.7605 -8.2472 -0.2043
23 6 1.2969 -8.9411 0.8782
24 6 1.6390 -10.2746 0.7491
25 6 1.4623 -10.9389 -0.4483
26 6 0.9343 -10.2726 -1.5477
27 7 0.6481 -10.6572 -2.8396
28 1 0.7911 -11.5458 -3.2012
29 6 0.1330 -9.6008 -3.5346
30 6 0.0680 -8.5174 -2.7393
31 6 0.5814 -8.9158 -1.4321
32 1 -0.4850 0.8401 -0.0004
33 1 -0.5846 -2.0170 0.8429
34 1 -0.5664 -2.1885 -0.9338
35 1 -0.5865 -4.5421 -0.8273
36 1 -1.2821 -4.2585 0.8035
37 1 3.9920 -3.2767 0.1724
38 1 3.2011 -3.7341 1.7058
39 1 3.7504 -5.5758 -0.6731
40 1 4.5999 -5.6032 0.8856
41 1 2.6356 -6.3470 2.0501
42 1 2.7979 -7.3715 0.6085
43 1 1.4418 -8.4371 1.8223
44 1 2.0501 -10.8036 1.5962
45 1 1.7348 -11.9807 -0.5306
46 1 -0.1761 -9.6303 -4.5690
47 1 -0.2958 -7.5387 -3.0156
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001049746571.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:14:01
Heat of formation + Delta-G solvation = 72.551718 kcal
Electronic energy + Delta-G solvation = -30117.794285 eV
Core-core repulsion = 26267.172592 eV
Total energy + Delta-G solvation = -3850.621693 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.45886 -40.12612 -37.78051 -36.74118 -35.26776 -32.51909 -32.42111 -31.79848
-29.80587 -29.16185 -28.55400 -28.04135 -25.03681 -24.38826 -23.19690 -22.04362
-21.35363 -21.28127 -20.54072 -19.69125 -19.21723 -17.59259 -16.89577 -16.40875
-15.77624 -15.56039 -15.32441 -15.08079 -14.71718 -14.51321 -14.21278 -14.07027
-13.97392 -13.64018 -13.15021 -13.13525 -12.89850 -12.71953 -12.37831 -12.15383
-11.96807 -11.81775 -11.69865 -11.46322 -11.43497 -11.01644 -10.78848 -10.61827
-10.44013 -10.35746 -10.06032 -9.90259 -9.85127 -9.75753 -9.53942 -8.88046
-8.50381 -8.40601 -8.12930 -7.83044 -6.75365 -5.63470 -2.97383 0.69637
1.40626 2.58738 2.88566 3.01876 3.25964 3.44707 3.48836 3.50329
3.80451 4.45904 4.55429 4.65090 4.76283 4.91644 4.96739 5.05992
5.16846 5.23483 5.37414 5.41107 5.44115 5.52535 5.57195 5.67822
5.71511 5.80709 5.87168 5.94694 5.96358 6.09272 6.17013 6.23847
6.28466 6.35275 6.38263 6.48808 6.49593 6.59467 6.65822 6.80981
6.88865 6.93018 6.99539 7.29550 7.31910 7.65215 7.73611 7.80867
7.91757 8.32236 8.53289 9.26146 9.90082 10.59172 11.48492
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.020596 B = 0.003038 C = 0.002883
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1359.167288 B = 9214.768820 C = 9710.945966
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.920 5.920
2 C -0.008 4.008
3 Si 0.910 3.090
4 H -0.286 1.286
5 H -0.291 1.291
6 H -0.286 1.286
7 C -0.226 4.226
8 H 0.078 0.922
9 N -0.593 5.593
10 C 0.173 3.827
11 C -0.133 4.133
12 C 0.117 3.883
13 H 0.080 0.920
14 C 0.159 3.841
15 H 0.018 0.982
16 C -0.115 4.115
17 C -0.129 4.129
18 C 0.105 3.895
19 N -0.594 5.594
20 C 0.561 3.439
21 O -0.522 6.522
22 C -0.072 4.072
23 C -0.116 4.116
24 C -0.106 4.106
25 C -0.115 4.115
26 C 0.089 3.911
27 N -0.598 5.598
28 H 0.415 0.585
29 C 0.048 3.952
30 C -0.188 4.188
31 C -0.065 4.065
32 H 0.252 0.748
33 H 0.055 0.945
34 H 0.039 0.961
35 H 0.087 0.913
36 H 0.059 0.941
37 H 0.066 0.934
38 H 0.063 0.937
39 H 0.063 0.937
40 H 0.071 0.929
41 H 0.066 0.934
42 H 0.085 0.915
43 H 0.130 0.870
44 H 0.130 0.870
45 H 0.121 0.879
46 H 0.172 0.828
47 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.987 -24.843 -1.100 25.362
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.204 4.204
3 Si 0.740 3.260
4 H -0.213 1.213
5 H -0.217 1.217
6 H -0.212 1.212
7 C -0.354 4.354
8 H 0.095 0.905
9 N -0.318 5.318
10 C 0.048 3.952
11 C -0.171 4.171
12 C 0.013 3.987
13 H 0.098 0.902
14 C 0.050 3.950
15 H 0.035 0.965
16 C -0.154 4.154
17 C -0.167 4.167
18 C -0.018 4.018
19 N -0.326 5.326
20 C 0.350 3.650
21 O -0.399 6.399
22 C -0.076 4.076
23 C -0.136 4.136
24 C -0.125 4.125
25 C -0.136 4.136
26 C -0.018 4.018
27 N -0.201 5.201
28 H 0.251 0.749
29 C -0.077 4.077
30 C -0.213 4.213
31 C -0.071 4.071
32 H 0.063 0.937
33 H 0.073 0.927
34 H 0.057 0.943
35 H 0.106 0.894
36 H 0.077 0.923
37 H 0.084 0.916
38 H 0.082 0.918
39 H 0.081 0.919
40 H 0.090 0.910
41 H 0.084 0.916
42 H 0.103 0.897
43 H 0.148 0.852
44 H 0.148 0.852
45 H 0.139 0.861
46 H 0.190 0.810
47 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges 4.335 -24.464 -1.430 24.887
hybrid contribution 0.605 0.476 -0.148 0.783
sum 4.940 -23.989 -1.579 24.543
Atomic orbital electron populations
1.69940 1.04860 1.25082 1.56849 1.24795 0.95653 0.97554 1.02389
0.86239 0.78462 0.83467 0.77811 1.21263 1.21657 1.21231 1.18946
0.90287 0.82283 1.43865 0.90461 1.44085 1.01829 0.99331 1.86547
1.21732 0.83580 0.88844 1.00996 1.23027 0.94423 0.97892 1.01786
1.22423 0.98811 0.78408 0.99081 0.90240 1.20767 0.91406 0.87136
0.95737 0.96475 1.21433 0.98545 0.94226 1.01204 1.21973 0.97610
0.95631 1.01525 1.21990 0.81604 0.99008 0.99158 1.47918 1.14312
1.11254 1.59129 1.18134 0.84173 0.84905 0.77837 1.90785 1.23401
1.77863 1.47867 1.19451 1.00863 0.93975 0.93281 1.21124 0.99528
0.94771 0.98150 1.20685 1.00870 0.94210 0.96730 1.20092 1.02804
0.99525 0.91196 1.18158 1.03152 0.94294 0.86215 1.41697 1.56822
1.12564 1.09030 0.74854 1.21896 1.01088 0.86752 0.98003 1.21846
1.08103 0.99653 0.91694 1.18954 1.02120 0.92362 0.93666 0.93727
0.92678 0.94319 0.89434 0.92260 0.91560 0.91810 0.91865 0.91030
0.91611 0.89652 0.85238 0.85216 0.86128 0.81044 0.83112
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -27.63 10.46 55.49 0.58 -27.05 16
2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16
3 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16
4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
7 C -0.23 -6.32 9.94 -15.06 -0.15 -6.47 16
8 H 0.08 2.07 7.31 -52.48 -0.38 1.68 16
9 N -0.59 -15.53 3.35 -163.27 -0.55 -16.07 16
10 C 0.17 4.47 5.47 -1.69 -0.01 4.46 16
11 C -0.13 -2.92 5.11 -25.20 -0.13 -3.05 16
12 C 0.12 2.30 3.33 -66.79 -0.22 2.08 16
13 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16
14 C 0.16 3.41 2.57 -68.35 -0.18 3.24 16
15 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16
16 C -0.12 -2.03 5.45 -27.24 -0.15 -2.18 16
17 C -0.13 -1.73 5.94 -26.20 -0.16 -1.89 16
18 C 0.11 1.34 5.18 -3.22 -0.02 1.33 16
19 N -0.59 -9.84 2.91 -165.00 -0.48 -10.32 16
20 C 0.56 9.78 7.19 -12.54 -0.09 9.69 16
21 O -0.52 -10.78 13.54 5.27 0.07 -10.71 16
22 C -0.07 -1.04 5.00 -104.75 -0.52 -1.56 16
23 C -0.12 -1.30 7.53 -39.17 -0.30 -1.59 16
24 C -0.11 -0.95 9.99 -39.63 -0.40 -1.35 16
25 C -0.12 -1.04 10.06 -39.37 -0.40 -1.44 16
26 C 0.09 0.98 7.27 -83.99 -0.61 0.37 16
27 N -0.60 -5.05 6.06 -10.66 -0.06 -5.11 16
28 H 0.41 2.00 8.96 -40.82 -0.37 1.63 16
29 C 0.05 0.45 11.82 -16.76 -0.20 0.25 16
30 C -0.19 -2.49 10.76 -37.78 -0.41 -2.90 16
31 C -0.07 -0.91 6.12 -104.85 -0.64 -1.56 16
32 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16
33 H 0.05 1.54 7.19 -51.93 -0.37 1.17 16
34 H 0.04 1.10 7.81 -51.93 -0.41 0.69 16
35 H 0.09 2.02 6.03 -51.93 -0.31 1.71 16
36 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16
37 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16
38 H 0.06 1.12 8.12 -51.93 -0.42 0.69 16
39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
42 H 0.09 0.95 5.21 -51.93 -0.27 0.68 16
43 H 0.13 1.27 7.15 -52.49 -0.38 0.90 16
44 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16
45 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16
46 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16
47 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16
LS Contribution 366.20 15.07 5.52 5.52
Total: -1.00 -34.74 366.20 -11.27 -46.01
By element:
Atomic # 1 Polarization: 9.93 SS G_CDS: -6.67 Total: 3.26 kcal
Atomic # 6 Polarization: 1.78 SS G_CDS: -4.66 Total: -2.88 kcal
Atomic # 7 Polarization: -58.04 SS G_CDS: -0.51 Total: -58.55 kcal
Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.71 kcal
Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -34.74 -11.27 -46.01 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049746571.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.567 kcal
(2) G-P(sol) polarization free energy of solvation -34.743 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.824 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.272 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.015 kcal
(6) G-S(sol) free energy of system = (1) + (5) 72.552 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds