Wall clock time and date at job start Tue Mar 31 2020 22:14:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31610 * 1
3 3 Si 1.86806 * 120.00256 * 2 1
4 4 H 1.48506 * 109.46899 * 240.00303 * 3 2 1
5 5 H 1.48501 * 109.46780 * 359.97438 * 3 2 1
6 6 H 1.48493 * 109.47402 * 120.00048 * 3 2 1
7 7 C 1.38819 * 119.99997 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99982 * 179.97438 * 7 2 1
9 9 N 1.36931 * 119.99922 * 359.97438 * 7 2 1
10 10 C 1.48383 * 126.56284 * 359.97438 * 9 7 2
11 11 C 1.55465 * 106.97630 * 185.54312 * 10 9 7
12 12 C 1.53431 * 101.67001 * 22.59839 * 11 10 9
13 13 H 1.08998 * 111.75041 * 78.22625 * 12 11 10
14 14 C 1.45025 * 126.56057 * 179.97438 * 9 7 2
15 15 H 1.08997 * 108.26957 * 263.89807 * 14 9 7
16 16 C 1.51084 * 119.18419 * 28.78201 * 14 9 7
17 17 C 1.53873 * 107.34357 * 183.87096 * 16 14 9
18 18 C 1.53141 * 111.46925 * 302.92490 * 17 16 14
19 19 N 1.45726 * 116.37882 * 207.26186 * 12 11 10
20 20 C 1.34779 * 122.23139 * 350.09377 * 19 12 11
21 21 O 1.21610 * 119.99886 * 5.33886 * 20 19 12
22 22 C 1.47373 * 119.99938 * 185.33572 * 20 19 12
23 23 C 1.39324 * 120.34531 * 46.13786 * 22 20 19
24 24 C 1.38271 * 120.19747 * 179.70248 * 23 22 20
25 25 C 1.38060 * 120.88874 * 0.27090 * 24 23 22
26 26 C 1.38978 * 120.26484 * 359.97438 * 25 24 23
27 27 N 1.37801 * 133.37167 * 180.02562 * 26 25 24
28 28 H 0.96996 * 125.07056 * 0.02562 * 27 26 25
29 29 C 1.36543 * 109.85210 * 180.02562 * 27 26 25
30 30 C 1.34552 * 109.89840 * 0.02562 * 29 27 26
31 31 C 1.40667 * 119.52199 * 0.02792 * 26 25 24
32 32 H 0.97005 * 120.00152 * 0.02562 * 1 2 3
33 33 H 1.09003 * 109.96028 * 304.92536 * 10 9 7
34 34 H 1.08999 * 109.96100 * 66.12046 * 10 9 7
35 35 H 1.09002 * 110.99100 * 264.50305 * 11 10 9
36 36 H 1.08998 * 110.98992 * 140.69823 * 11 10 9
37 37 H 1.09004 * 109.88214 * 303.32771 * 16 14 9
38 38 H 1.08996 * 109.88585 * 64.40741 * 16 14 9
39 39 H 1.08997 * 109.06706 * 63.59701 * 17 16 14
40 40 H 1.09002 * 109.06642 * 182.61160 * 17 16 14
41 41 H 1.09000 * 109.32650 * 288.42036 * 18 17 16
42 42 H 1.08997 * 109.23866 * 169.08634 * 18 17 16
43 43 H 1.07998 * 119.89799 * 359.97438 * 23 22 20
44 44 H 1.08003 * 119.55636 * 180.25575 * 24 23 22
45 45 H 1.07999 * 119.86621 * 180.02562 * 25 24 23
46 46 H 1.08000 * 125.05182 * 180.02562 * 29 27 26
47 47 H 1.08001 * 126.49241 * 179.97438 * 30 29 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.1039 1.6964 -1.2126
5 1 1.2852 2.7465 -0.0006
6 1 3.1039 1.6964 1.2124
7 6 2.0102 -1.2022 0.0005
8 1 3.0902 -1.2022 0.0001
9 7 1.3255 -2.3881 0.0016
10 6 -0.1486 -2.5576 0.0028
11 6 -0.4303 -4.0797 0.1473
12 6 0.8717 -4.5767 0.7891
13 1 0.9050 -4.3584 1.8564
14 6 1.9024 -3.7186 0.0017
15 1 1.9366 -4.0764 -1.0273
16 6 3.2566 -3.9344 0.6359
17 6 3.6455 -5.4041 0.3981
18 6 2.5909 -6.3611 0.9611
19 7 1.2347 -5.9634 0.5266
20 6 0.3887 -6.8277 -0.0684
21 8 -0.6814 -6.4360 -0.4931
22 6 0.7605 -8.2472 -0.2043
23 6 1.2969 -8.9411 0.8782
24 6 1.6390 -10.2746 0.7491
25 6 1.4623 -10.9389 -0.4483
26 6 0.9343 -10.2726 -1.5477
27 7 0.6481 -10.6572 -2.8396
28 1 0.7911 -11.5458 -3.2012
29 6 0.1330 -9.6008 -3.5346
30 6 0.0680 -8.5174 -2.7393
31 6 0.5814 -8.9158 -1.4321
32 1 -0.4850 0.8401 -0.0004
33 1 -0.5846 -2.0170 0.8429
34 1 -0.5664 -2.1885 -0.9338
35 1 -0.5865 -4.5421 -0.8273
36 1 -1.2821 -4.2585 0.8035
37 1 3.9920 -3.2767 0.1724
38 1 3.2011 -3.7341 1.7058
39 1 3.7504 -5.5758 -0.6731
40 1 4.5999 -5.6032 0.8856
41 1 2.6356 -6.3470 2.0501
42 1 2.7979 -7.3715 0.6085
43 1 1.4418 -8.4371 1.8223
44 1 2.0501 -10.8036 1.5962
45 1 1.7348 -11.9807 -0.5306
46 1 -0.1761 -9.6303 -4.5690
47 1 -0.2958 -7.5387 -3.0156
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049746571.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:14:00
Heat of formation + Delta-G solvation = 50.425696 kcal
Electronic energy + Delta-G solvation = -30118.753741 eV
Core-core repulsion = 26267.172592 eV
Total energy + Delta-G solvation = -3851.581149 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.33063 -41.48702 -39.25895 -37.67765 -36.83296 -34.29617 -33.86636 -32.91064
-31.10284 -30.33013 -29.77356 -29.53785 -26.53272 -26.22326 -24.27833 -23.02606
-22.78744 -22.42140 -21.80627 -21.37164 -20.44559 -18.79835 -18.37898 -17.56991
-17.16732 -16.76619 -16.70211 -16.40700 -16.07379 -15.76145 -15.47337 -15.36810
-15.26837 -15.04858 -14.64162 -14.23524 -14.10215 -14.01931 -13.85476 -13.52573
-13.41223 -13.17113 -12.93505 -12.69591 -12.60919 -12.58570 -12.47395 -12.13102
-12.08648 -11.90151 -11.77986 -11.71270 -11.55894 -11.42122 -10.76902 -10.71305
-10.28307 -9.55732 -9.18647 -8.91680 -8.65436 -7.83520 -5.21024 -0.15643
0.62812 1.45371 1.49853 1.55970 1.63775 1.83738 2.02083 2.26793
2.51031 2.91254 3.31803 3.34554 3.54675 3.86627 3.94312 4.00842
4.02206 4.07858 4.10947 4.24074 4.28962 4.30372 4.33639 4.44267
4.56172 4.58355 4.65668 4.66685 4.80071 4.85356 4.92769 4.96951
5.02798 5.09762 5.10831 5.14797 5.27366 5.42519 5.46747 5.48566
5.51658 5.58620 5.61873 5.70823 5.71768 5.74813 6.13967 6.17634
6.51883 6.74480 7.04999 7.21760 7.75175 8.46137 9.28270
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.020596 B = 0.003038 C = 0.002883
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1359.167288 B = 9214.768820 C = 9710.945966
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.956 5.956
2 C -0.070 4.070
3 Si 0.982 3.018
4 H -0.278 1.278
5 H -0.297 1.297
6 H -0.271 1.271
7 C -0.236 4.236
8 H 0.089 0.911
9 N -0.612 5.612
10 C 0.185 3.815
11 C -0.117 4.117
12 C 0.132 3.868
13 H 0.087 0.913
14 C 0.155 3.845
15 H -0.010 1.010
16 C -0.110 4.110
17 C -0.119 4.119
18 C 0.101 3.899
19 N -0.594 5.594
20 C 0.556 3.444
21 O -0.572 6.572
22 C -0.110 4.110
23 C -0.105 4.105
24 C -0.105 4.105
25 C -0.098 4.098
26 C 0.076 3.924
27 N -0.580 5.580
28 H 0.436 0.564
29 C 0.083 3.917
30 C -0.251 4.251
31 C -0.096 4.096
32 H 0.246 0.754
33 H 0.028 0.972
34 H -0.003 1.003
35 H 0.071 0.929
36 H 0.062 0.938
37 H 0.056 0.944
38 H 0.070 0.930
39 H 0.053 0.947
40 H 0.114 0.886
41 H 0.095 0.905
42 H 0.109 0.891
43 H 0.144 0.856
44 H 0.170 0.830
45 H 0.160 0.840
46 H 0.210 0.790
47 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.232 -28.972 0.125 30.119
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.604 5.604
2 C -0.262 4.262
3 Si 0.810 3.190
4 H -0.204 1.204
5 H -0.223 1.223
6 H -0.196 1.196
7 C -0.364 4.364
8 H 0.107 0.893
9 N -0.336 5.336
10 C 0.060 3.940
11 C -0.155 4.155
12 C 0.027 3.973
13 H 0.104 0.896
14 C 0.046 3.954
15 H 0.008 0.992
16 C -0.148 4.148
17 C -0.158 4.158
18 C -0.019 4.019
19 N -0.326 5.326
20 C 0.347 3.653
21 O -0.452 6.452
22 C -0.114 4.114
23 C -0.125 4.125
24 C -0.123 4.123
25 C -0.118 4.118
26 C -0.031 4.031
27 N -0.185 5.185
28 H 0.277 0.723
29 C -0.045 4.045
30 C -0.276 4.276
31 C -0.102 4.102
32 H 0.056 0.944
33 H 0.046 0.954
34 H 0.015 0.985
35 H 0.090 0.910
36 H 0.081 0.919
37 H 0.075 0.925
38 H 0.088 0.912
39 H 0.072 0.928
40 H 0.132 0.868
41 H 0.113 0.887
42 H 0.127 0.873
43 H 0.161 0.839
44 H 0.187 0.813
45 H 0.177 0.823
46 H 0.227 0.773
47 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges 7.652 -28.675 -0.193 29.679
hybrid contribution -0.423 1.635 -0.626 1.801
sum 7.229 -27.040 -0.819 28.002
Atomic orbital electron populations
1.70184 1.06582 1.25380 1.58299 1.25732 0.96557 1.01270 1.02682
0.85105 0.77058 0.78509 0.78375 1.20422 1.22311 1.19647 1.19401
0.91045 0.83135 1.42857 0.89285 1.44348 1.01990 1.00896 1.86404
1.21417 0.83977 0.91004 0.97625 1.22747 0.96301 0.95010 1.01458
1.22038 0.96107 0.80525 0.98629 0.89562 1.20916 0.94491 0.84973
0.94985 0.99231 1.21406 0.95323 0.97265 1.00838 1.21956 0.99707
0.92485 1.01619 1.22326 0.78914 0.99815 1.00876 1.47995 1.15977
1.09498 1.59113 1.18798 0.83471 0.86502 0.76547 1.90740 1.25584
1.79086 1.49813 1.19274 1.04898 0.92070 0.95166 1.21373 0.97907
0.95823 0.97379 1.21128 1.00034 0.93181 0.98003 1.20611 1.00020
1.01085 0.90081 1.18400 1.03770 0.93222 0.87689 1.41694 1.55402
1.13207 1.08177 0.72331 1.22315 0.97793 0.85545 0.98804 1.21782
1.12268 1.00045 0.93536 1.19255 1.03015 0.94227 0.93689 0.94447
0.95416 0.98455 0.91040 0.91883 0.92491 0.91177 0.92849 0.86755
0.88699 0.87319 0.83851 0.81282 0.82259 0.77334 0.86420
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -60.58 10.46 21.65 0.23 -60.35 16
2 C -0.07 -4.13 5.49 84.87 0.47 -3.67 16
3 Si 0.98 47.09 29.55 68.60 2.03 49.12 16
4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16
5 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16
6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16
7 C -0.24 -13.64 9.94 84.04 0.84 -12.81 16
8 H 0.09 4.82 7.31 -2.91 -0.02 4.79 16
9 N -0.61 -33.76 3.35 -670.46 -2.25 -36.00 16
10 C 0.19 10.40 5.47 86.87 0.48 10.88 16
11 C -0.12 -5.56 5.11 31.59 0.16 -5.40 16
12 C 0.13 5.39 3.33 46.15 0.15 5.54 16
13 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16
14 C 0.15 6.90 2.57 45.51 0.12 7.01 16
15 H -0.01 -0.48 8.06 -2.39 -0.02 -0.50 16
16 C -0.11 -3.78 5.45 30.26 0.16 -3.61 16
17 C -0.12 -2.91 5.94 30.94 0.18 -2.73 16
18 C 0.10 2.33 5.18 86.17 0.45 2.77 16
19 N -0.59 -19.81 2.91 -794.19 -2.31 -22.12 16
20 C 0.56 20.21 7.19 86.65 0.62 20.83 16
21 O -0.57 -25.67 13.54 -4.06 -0.06 -25.73 16
22 C -0.11 -3.15 5.00 -19.95 -0.10 -3.25 16
23 C -0.11 -2.04 7.53 22.54 0.17 -1.87 16
24 C -0.10 -1.36 9.99 22.24 0.22 -1.14 16
25 C -0.10 -1.29 10.06 22.41 0.23 -1.07 16
26 C 0.08 1.48 7.27 38.98 0.28 1.76 16
27 N -0.58 -8.05 6.06 -187.63 -1.14 -9.19 16
28 H 0.44 2.36 8.96 -92.71 -0.83 1.53 16
29 C 0.08 1.46 11.82 83.12 0.98 2.44 16
30 C -0.25 -7.08 10.76 23.43 0.25 -6.83 16
31 C -0.10 -2.69 6.12 -20.01 -0.12 -2.82 16
32 H 0.25 15.19 8.31 -92.70 -0.77 14.42 16
33 H 0.03 1.68 7.19 -2.39 -0.02 1.66 16
34 H 0.00 -0.18 7.81 -2.39 -0.02 -0.20 16
35 H 0.07 3.66 6.03 -2.39 -0.01 3.64 16
36 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16
37 H 0.06 2.05 7.70 -2.39 -0.02 2.03 16
38 H 0.07 2.33 8.12 -2.39 -0.02 2.31 16
39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16
40 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16
41 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16
42 H 0.11 2.06 5.21 -2.39 -0.01 2.05 16
43 H 0.14 2.29 7.15 -2.91 -0.02 2.27 16
44 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16
45 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16
46 H 0.21 1.87 8.06 -2.91 -0.02 1.85 16
47 H 0.12 3.95 8.06 -2.91 -0.02 3.92 16
Total: -1.00 -85.07 366.20 2.21 -82.86
By element:
Atomic # 1 Polarization: 15.19 SS G_CDS: 0.17 Total: 15.36 kcal
Atomic # 6 Polarization: 0.51 SS G_CDS: 5.54 Total: 6.05 kcal
Atomic # 7 Polarization: -122.19 SS G_CDS: -5.47 Total: -127.66 kcal
Atomic # 8 Polarization: -25.67 SS G_CDS: -0.06 Total: -25.73 kcal
Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal
Total: -85.07 2.21 -82.86 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049746571.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 133.290 kcal
(2) G-P(sol) polarization free energy of solvation -85.075 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.215 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.864 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.426 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds