Wall clock time and date at job start Tue Mar 31 2020 22:14:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31623 * 1
3 3 Si 1.86799 * 120.00457 * 2 1
4 4 H 1.48496 * 109.47525 * 179.97438 * 3 2 1
5 5 H 1.48501 * 109.46890 * 299.99896 * 3 2 1
6 6 H 1.48503 * 109.46741 * 59.99626 * 3 2 1
7 7 C 1.38817 * 119.99532 * 179.97438 * 2 1 3
8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1
9 9 N 1.36935 * 120.00290 * 0.02562 * 7 2 1
10 10 C 1.48691 * 126.23477 * 0.29029 * 9 7 2
11 11 C 1.55469 * 106.78327 * 173.96645 * 10 9 7
12 12 C 1.53436 * 101.67132 * 337.42509 * 11 10 9
13 13 H 1.08999 * 111.75550 * 281.76580 * 12 11 10
14 14 C 1.45022 * 126.56048 * 179.97438 * 9 7 2
15 15 H 1.09000 * 108.70953 * 96.45344 * 14 9 7
16 16 C 1.51078 * 119.19101 * 331.16816 * 14 9 7
17 17 C 1.53868 * 107.34346 * 176.73469 * 16 14 9
18 18 C 1.52718 * 111.52056 * 56.93044 * 17 16 14
19 19 N 1.45724 * 116.37504 * 152.71989 * 12 11 10
20 20 C 1.34781 * 122.23079 * 9.89273 * 19 12 11
21 21 O 1.21612 * 119.99795 * 354.35820 * 20 19 12
22 22 C 1.47375 * 120.00269 * 174.36520 * 20 19 12
23 23 C 1.39315 * 120.34073 * 314.20995 * 22 20 19
24 24 C 1.38279 * 120.19616 * 179.76577 * 23 22 20
25 25 C 1.38055 * 120.88264 * 0.52003 * 24 23 22
26 26 C 1.38981 * 120.27152 * 359.73736 * 25 24 23
27 27 N 1.37793 * 133.37375 * 180.02562 * 26 25 24
28 28 H 0.96994 * 125.07567 * 359.94680 * 27 26 25
29 29 C 1.36555 * 109.84868 * 179.97438 * 27 26 25
30 30 C 1.34548 * 109.89920 * 0.02562 * 29 27 26
31 31 C 1.40660 * 119.51600 * 0.02562 * 26 25 24
32 32 H 0.97002 * 119.99552 * 0.02562 * 1 2 3
33 33 H 1.09005 * 110.03196 * 54.65866 * 10 9 7
34 34 H 1.08997 * 110.10452 * 293.31859 * 10 9 7
35 35 H 1.08994 * 110.99007 * 219.33128 * 11 10 9
36 36 H 1.08999 * 110.98377 * 95.51932 * 11 10 9
37 37 H 1.09001 * 109.87957 * 57.27802 * 16 14 9
38 38 H 1.09003 * 109.94662 * 296.23407 * 16 14 9
39 39 H 1.09000 * 109.07128 * 296.39832 * 17 16 14
40 40 H 1.09007 * 109.01363 * 177.41523 * 17 16 14
41 41 H 1.09010 * 109.15706 * 191.06008 * 18 17 16
42 42 H 1.08994 * 109.12183 * 71.85063 * 18 17 16
43 43 H 1.07996 * 119.90523 * 0.02832 * 23 22 20
44 44 H 1.08001 * 119.55464 * 180.23446 * 24 23 22
45 45 H 1.08004 * 119.86303 * 179.72017 * 25 24 23
46 46 H 1.07999 * 125.04623 * 179.97438 * 29 27 26
47 47 H 1.07999 * 126.49165 * 179.97438 * 30 29 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2504 1.6177 0.0000
4 1 3.7103 1.3463 0.0006
5 1 1.8916 2.3963 -1.2125
6 1 1.8915 2.3964 1.2125
7 6 2.0102 -1.2022 0.0005
8 1 3.0902 -1.2022 0.0001
9 7 1.3255 -2.3881 0.0005
10 6 -0.1526 -2.5496 -0.0061
11 6 -0.4374 -4.0702 -0.1597
12 6 0.8659 -4.5671 -0.7991
13 1 0.9037 -4.3433 -1.8652
14 6 1.9023 -3.7187 0.0005
15 1 1.9349 -4.0856 1.0264
16 6 3.2555 -3.9352 -0.6355
17 6 3.6377 -5.4085 -0.4104
18 6 2.5806 -6.3543 -0.9765
19 7 1.2246 -5.9559 -0.5422
20 6 0.3745 -6.8210 0.0456
21 8 -0.6938 -6.4277 0.4734
22 6 0.7395 -8.2434 0.1700
23 6 1.2795 -8.9289 -0.9160
24 6 1.6254 -10.2622 -0.7945
25 6 1.4341 -10.9385 0.3937
26 6 0.8926 -10.2834 1.4934
27 7 0.5914 -10.6810 2.7778
28 1 0.7304 -11.5731 3.1323
29 6 0.0674 -9.6316 3.4771
30 6 0.0100 -8.5408 2.6915
31 6 0.5402 -8.9259 1.3869
32 1 -0.4849 0.8401 -0.0004
33 1 -0.5841 -2.0035 -0.8450
34 1 -0.5735 -2.1849 0.9309
35 1 -1.2870 -4.2435 -0.8201
36 1 -0.5984 -4.5373 0.8119
37 1 3.9939 -3.2849 -0.1664
38 1 3.2022 -3.7250 -1.7037
39 1 3.7419 -5.5900 0.6593
40 1 4.5914 -5.6067 -0.8996
41 1 2.7841 -7.3673 -0.6291
42 1 2.6289 -6.3332 -2.0652
43 1 1.4322 -8.4165 -1.8543
44 1 2.0467 -10.7826 -1.6420
45 1 1.7061 -11.9810 0.4689
46 1 -0.2539 -9.6716 4.5074
47 1 -0.3587 -7.5654 2.9727
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001049746574.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:14:09
Heat of formation + Delta-G solvation = 72.711422 kcal
Electronic energy + Delta-G solvation = -30117.252444 eV
Core-core repulsion = 26266.637677 eV
Total energy + Delta-G solvation = -3850.614768 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.45815 -40.11693 -37.76405 -36.74169 -35.26609 -32.52707 -32.41752 -31.79482
-29.80200 -29.16086 -28.55931 -28.04004 -25.03573 -24.38578 -23.19200 -22.04216
-21.35159 -21.27885 -20.53687 -19.68580 -19.21963 -17.59044 -16.89341 -16.41083
-15.77633 -15.55644 -15.31940 -15.08321 -14.72478 -14.51121 -14.21280 -14.07054
-13.97564 -13.62794 -13.14863 -13.13390 -12.90152 -12.72482 -12.37418 -12.15143
-11.96910 -11.82197 -11.69369 -11.46357 -11.43422 -11.01419 -10.81755 -10.61277
-10.43792 -10.35229 -10.01796 -9.89512 -9.85100 -9.75899 -9.54556 -8.87756
-8.50662 -8.40457 -8.12374 -7.82931 -6.75802 -5.63666 -2.97687 0.69528
1.40662 2.58863 2.88815 3.01962 3.26109 3.43912 3.48982 3.51624
3.80893 4.45915 4.55110 4.65226 4.76314 4.91415 4.96746 5.05840
5.17050 5.23668 5.37095 5.41170 5.43861 5.52691 5.57083 5.67894
5.71546 5.80879 5.87346 5.94353 5.96459 6.09515 6.16890 6.23888
6.28511 6.35531 6.38020 6.48861 6.49643 6.59637 6.65930 6.80809
6.88761 6.93083 6.99675 7.29679 7.31990 7.66177 7.73958 7.81191
7.92382 8.31656 8.53520 9.25672 9.89820 10.58408 11.48099
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.020655 B = 0.003038 C = 0.002879
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1355.271412 B = 9215.624646 C = 9723.985077
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.920 5.920
2 C -0.009 4.009
3 Si 0.909 3.091
4 H -0.280 1.280
5 H -0.291 1.291
6 H -0.291 1.291
7 C -0.224 4.224
8 H 0.078 0.922
9 N -0.594 5.594
10 C 0.174 3.826
11 C -0.134 4.134
12 C 0.116 3.884
13 H 0.080 0.920
14 C 0.160 3.840
15 H 0.019 0.981
16 C -0.115 4.115
17 C -0.129 4.129
18 C 0.105 3.895
19 N -0.594 5.594
20 C 0.561 3.439
21 O -0.522 6.522
22 C -0.072 4.072
23 C -0.116 4.116
24 C -0.106 4.106
25 C -0.115 4.115
26 C 0.088 3.912
27 N -0.598 5.598
28 H 0.415 0.585
29 C 0.048 3.952
30 C -0.188 4.188
31 C -0.065 4.065
32 H 0.251 0.749
33 H 0.056 0.944
34 H 0.039 0.961
35 H 0.058 0.942
36 H 0.087 0.913
37 H 0.066 0.934
38 H 0.063 0.937
39 H 0.062 0.938
40 H 0.072 0.928
41 H 0.085 0.915
42 H 0.065 0.935
43 H 0.130 0.870
44 H 0.130 0.870
45 H 0.121 0.879
46 H 0.172 0.828
47 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.928 -24.906 0.974 25.407
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.205 4.205
3 Si 0.740 3.260
4 H -0.206 1.206
5 H -0.218 1.218
6 H -0.218 1.218
7 C -0.352 4.352
8 H 0.096 0.904
9 N -0.319 5.319
10 C 0.049 3.951
11 C -0.172 4.172
12 C 0.012 3.988
13 H 0.098 0.902
14 C 0.051 3.949
15 H 0.036 0.964
16 C -0.154 4.154
17 C -0.168 4.168
18 C -0.017 4.017
19 N -0.326 5.326
20 C 0.350 3.650
21 O -0.399 6.399
22 C -0.076 4.076
23 C -0.136 4.136
24 C -0.125 4.125
25 C -0.136 4.136
26 C -0.018 4.018
27 N -0.201 5.201
28 H 0.251 0.749
29 C -0.078 4.078
30 C -0.213 4.213
31 C -0.071 4.071
32 H 0.062 0.938
33 H 0.074 0.926
34 H 0.057 0.943
35 H 0.077 0.923
36 H 0.106 0.894
37 H 0.084 0.916
38 H 0.082 0.918
39 H 0.081 0.919
40 H 0.090 0.910
41 H 0.103 0.897
42 H 0.084 0.916
43 H 0.148 0.852
44 H 0.148 0.852
45 H 0.139 0.861
46 H 0.190 0.810
47 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges 4.295 -24.540 1.308 24.947
hybrid contribution 0.580 0.480 0.138 0.766
sum 4.875 -24.060 1.446 24.592
Atomic orbital electron populations
1.69971 1.04847 1.24812 1.57083 1.24801 0.95665 0.97570 1.02458
0.86083 0.78680 0.84047 0.77186 1.20576 1.21844 1.21848 1.19048
0.90354 0.82315 1.43512 0.90380 1.44188 1.01856 0.99358 1.86510
1.21793 0.83431 0.88843 1.01015 1.23033 0.94390 0.97992 1.01791
1.22548 0.98835 0.78303 0.99088 0.90234 1.20843 0.91368 0.87064
0.95656 0.96387 1.21432 0.98556 0.94182 1.01237 1.21901 0.97625
0.95697 1.01552 1.21896 0.81639 0.99039 0.99152 1.47923 1.14195
1.11112 1.59401 1.18133 0.84126 0.84937 0.77853 1.90784 1.23579
1.77942 1.47614 1.19452 1.00886 0.93894 0.93370 1.21125 0.99516
0.94833 0.98083 1.20686 1.00843 0.94162 0.96820 1.20092 1.02677
0.99546 0.91293 1.18155 1.03047 0.94212 0.86418 1.41698 1.56432
1.12496 1.09494 0.74856 1.21899 1.01006 0.86879 0.97976 1.21849
1.07963 0.99600 0.91857 1.18954 1.02010 0.92300 0.93822 0.93847
0.92555 0.94296 0.92283 0.89416 0.91580 0.91796 0.91891 0.90989
0.89665 0.91646 0.85233 0.85216 0.86131 0.81049 0.83095
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -27.58 10.42 55.49 0.58 -27.01 16
2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16
3 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16
4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
7 C -0.22 -6.27 9.94 -15.06 -0.15 -6.42 16
8 H 0.08 2.10 7.33 -52.49 -0.38 1.71 16
9 N -0.59 -15.53 3.35 -162.72 -0.54 -16.08 16
10 C 0.17 4.49 5.47 -1.52 -0.01 4.48 16
11 C -0.13 -2.94 5.11 -25.19 -0.13 -3.06 16
12 C 0.12 2.29 3.33 -66.52 -0.22 2.07 16
13 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16
14 C 0.16 3.43 2.62 -68.09 -0.18 3.25 16
15 H 0.02 0.44 8.06 -51.93 -0.42 0.02 16
16 C -0.12 -2.03 5.44 -27.25 -0.15 -2.18 16
17 C -0.13 -1.73 5.93 -26.42 -0.16 -1.89 16
18 C 0.11 1.35 5.13 -3.44 -0.02 1.33 16
19 N -0.59 -9.84 2.90 -164.95 -0.48 -10.31 16
20 C 0.56 9.77 7.20 -12.54 -0.09 9.68 16
21 O -0.52 -10.78 13.50 5.27 0.07 -10.70 16
22 C -0.07 -1.04 5.01 -104.75 -0.52 -1.57 16
23 C -0.12 -1.30 7.53 -39.17 -0.30 -1.59 16
24 C -0.11 -0.95 9.99 -39.63 -0.40 -1.35 16
25 C -0.12 -1.04 10.05 -39.37 -0.40 -1.44 16
26 C 0.09 0.98 7.27 -84.00 -0.61 0.37 16
27 N -0.60 -5.05 6.06 -10.66 -0.06 -5.11 16
28 H 0.41 2.00 8.96 -40.82 -0.37 1.63 16
29 C 0.05 0.45 11.82 -16.75 -0.20 0.25 16
30 C -0.19 -2.49 10.73 -37.78 -0.41 -2.90 16
31 C -0.07 -0.91 6.12 -104.85 -0.64 -1.55 16
32 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16
33 H 0.06 1.58 7.16 -51.93 -0.37 1.21 16
34 H 0.04 1.10 7.81 -51.93 -0.41 0.70 16
35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
36 H 0.09 2.03 6.02 -51.93 -0.31 1.71 16
37 H 0.07 1.21 7.73 -51.93 -0.40 0.81 16
38 H 0.06 1.12 8.12 -51.93 -0.42 0.70 16
39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
41 H 0.09 0.95 5.22 -51.92 -0.27 0.68 16
42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16
43 H 0.13 1.28 7.13 -52.49 -0.37 0.90 16
44 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16
45 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16
46 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16
47 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16
LS Contribution 366.09 15.07 5.52 5.52
Total: -1.00 -34.72 366.09 -11.28 -46.00
By element:
Atomic # 1 Polarization: 9.87 SS G_CDS: -6.67 Total: 3.21 kcal
Atomic # 6 Polarization: 1.81 SS G_CDS: -4.66 Total: -2.86 kcal
Atomic # 7 Polarization: -58.00 SS G_CDS: -0.51 Total: -58.51 kcal
Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.70 kcal
Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -34.72 -11.28 -46.00 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049746574.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.711 kcal
(2) G-P(sol) polarization free energy of solvation -34.724 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.987 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.276 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.000 kcal
(6) G-S(sol) free energy of system = (1) + (5) 72.711 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds