Wall clock time and date at job start Tue Mar 31 2020 22:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99566 * 2 1 4 4 H 1.48496 * 109.47668 * 274.98477 * 3 2 1 5 5 H 1.48502 * 109.47158 * 34.98384 * 3 2 1 6 6 H 1.48500 * 109.47207 * 154.97839 * 3 2 1 7 7 C 1.38810 * 120.00650 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00240 * 171.70832 * 7 2 1 9 9 N 1.36946 * 119.99653 * 351.70654 * 7 2 1 10 10 C 1.48380 * 126.55737 * 3.55722 * 9 7 2 11 11 C 1.55483 * 106.97109 * 185.50217 * 10 9 7 12 12 C 1.53435 * 101.66682 * 22.60129 * 11 10 9 13 13 H 1.08995 * 111.74517 * 78.22636 * 12 11 10 14 14 C 1.45022 * 126.56008 * 183.53614 * 9 7 2 15 15 H 1.09007 * 108.25947 * 263.93464 * 14 9 7 16 16 C 1.51085 * 119.18784 * 28.81138 * 14 9 7 17 17 C 1.53865 * 107.34460 * 183.87584 * 16 14 9 18 18 C 1.53143 * 111.46974 * 302.93144 * 17 16 14 19 19 N 1.45727 * 116.37786 * 207.25926 * 12 11 10 20 20 C 1.34782 * 122.22800 * 350.10019 * 19 12 11 21 21 O 1.21587 * 119.99881 * 5.29759 * 20 19 12 22 22 C 1.47575 * 120.00010 * 185.29918 * 20 19 12 23 23 C 1.40233 * 119.83532 * 212.36758 * 22 20 19 24 24 C 1.36197 * 120.37962 * 179.72221 * 23 22 20 25 25 C 1.39912 * 119.96316 * 0.25640 * 24 23 22 26 26 C 1.46256 * 133.84395 * 180.02562 * 25 24 23 27 27 C 1.34458 * 107.03296 * 179.97438 * 26 25 24 28 28 N 1.36558 * 109.98227 * 359.97438 * 27 26 25 29 29 H 0.96994 * 125.07675 * 179.97438 * 28 27 26 30 30 C 1.37829 * 109.85501 * 0.02562 * 28 27 26 31 31 C 1.38688 * 133.36910 * 180.02562 * 30 28 27 32 32 H 0.96993 * 120.00560 * 0.02562 * 1 2 3 33 33 H 1.08995 * 109.96623 * 304.87643 * 10 9 7 34 34 H 1.08999 * 109.96525 * 66.12694 * 10 9 7 35 35 H 1.08998 * 110.98682 * 264.50809 * 11 10 9 36 36 H 1.08997 * 110.98535 * 140.69378 * 11 10 9 37 37 H 1.09000 * 109.88233 * 303.34224 * 16 14 9 38 38 H 1.09000 * 109.88056 * 64.41395 * 16 14 9 39 39 H 1.08996 * 109.06797 * 63.60418 * 17 16 14 40 40 H 1.09007 * 109.06750 * 182.61446 * 17 16 14 41 41 H 1.09001 * 109.32413 * 288.41683 * 18 17 16 42 42 H 1.09003 * 109.23810 * 169.08746 * 18 17 16 43 43 H 1.07995 * 119.80988 * 0.02562 * 23 22 20 44 44 H 1.08007 * 120.02009 * 180.27770 * 24 23 22 45 45 H 1.07997 * 126.48045 * 359.97438 * 26 25 24 46 46 H 1.08002 * 125.00865 * 180.02562 * 27 26 25 47 47 H 1.07996 * 120.16638 * 359.97270 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3923 2.1074 -1.3947 5 1 1.5041 2.6200 0.8027 6 1 3.5963 1.4123 0.5922 7 6 2.0104 -1.2020 -0.0005 8 1 3.0818 -1.2068 -0.1354 9 7 1.3365 -2.3819 0.1700 10 6 -0.1325 -2.5509 0.2929 11 6 -0.3919 -4.0507 0.6106 12 6 0.9559 -4.4794 1.2054 13 1 1.0626 -4.1537 2.2401 14 6 1.9220 -3.7053 0.2646 15 1 1.8865 -4.1659 -0.7228 16 6 3.3190 -3.8549 0.8200 17 6 3.7014 -5.3409 0.7058 18 6 2.6961 -6.2361 1.4361 19 7 1.3100 -5.8855 1.0598 20 6 0.4307 -6.8060 0.6169 21 8 -0.6697 -6.4600 0.2323 22 6 0.8034 -8.2338 0.5987 23 6 0.2886 -9.0766 -0.3969 24 6 0.6297 -10.3948 -0.4275 25 6 1.4943 -10.9156 0.5415 26 6 2.0499 -12.2446 0.7943 27 6 2.8324 -12.1438 1.8831 28 7 2.8233 -10.8595 2.3469 29 1 3.3128 -10.5435 3.1224 30 6 2.0139 -10.0794 1.5495 31 6 1.6617 -8.7382 1.5729 32 1 -0.4850 0.8399 -0.0004 33 1 -0.5123 -1.9281 1.1028 34 1 -0.6181 -2.2798 -0.6445 35 1 -0.6129 -4.6097 -0.2986 36 1 -1.1938 -4.1621 1.3403 37 1 4.0150 -3.2475 0.2415 38 1 3.3373 -3.5467 1.8654 39 1 3.7321 -5.6208 -0.3472 40 1 4.6892 -5.4891 1.1423 41 1 2.8172 -6.1113 2.5121 42 1 2.8856 -7.2771 1.1741 43 1 -0.3783 -8.6771 -1.1464 44 1 0.2333 -11.0377 -1.1995 45 1 1.8663 -13.1380 0.2159 46 1 3.3870 -12.9584 2.3250 47 1 2.0538 -8.0875 2.3404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049754041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:17 Heat of formation + Delta-G solvation = 58.305509 kcal Electronic energy + Delta-G solvation = -29792.096046 eV Core-core repulsion = 25940.856591 eV Total energy + Delta-G solvation = -3851.239455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.34463 -41.57813 -39.43283 -37.55303 -36.95119 -34.32773 -33.98195 -32.92853 -31.04642 -30.49492 -29.94882 -29.44654 -26.48446 -26.27149 -24.11272 -23.58590 -22.84538 -22.29619 -21.56113 -21.40257 -20.31339 -18.70618 -18.65495 -17.81949 -17.17473 -16.90858 -16.76033 -16.39852 -15.94684 -15.72190 -15.45285 -15.32283 -15.26499 -14.76514 -14.69158 -14.44613 -14.25845 -14.08085 -13.85780 -13.76336 -13.42025 -13.17161 -12.88959 -12.74836 -12.74436 -12.58882 -12.30133 -12.20335 -12.07044 -11.80324 -11.77562 -11.71588 -11.57802 -11.44131 -10.76986 -10.67558 -10.35358 -9.61171 -9.22094 -8.92499 -8.64231 -7.86186 -5.21214 -0.18387 0.50006 1.45381 1.47490 1.57064 1.63474 1.86605 2.01416 2.27938 2.50250 2.90638 3.30510 3.32400 3.53358 3.75463 3.91377 3.95605 3.98871 4.03679 4.06473 4.19944 4.25303 4.30557 4.36378 4.39391 4.54720 4.56709 4.61711 4.68746 4.73796 4.76648 4.89328 4.98606 5.03450 5.05206 5.08627 5.12780 5.26758 5.33219 5.42407 5.47232 5.52988 5.59051 5.61955 5.69268 5.72262 5.79796 6.13207 6.16656 6.46892 6.74244 7.04117 7.16105 7.74561 8.45490 9.26832 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026395 B = 0.002728 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.572289 B =10261.944094 C =10960.933433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.290 1.290 5 H -0.295 1.295 6 H -0.262 1.262 7 C -0.234 4.234 8 H 0.089 0.911 9 N -0.612 5.612 10 C 0.184 3.816 11 C -0.118 4.118 12 C 0.133 3.867 13 H 0.088 0.912 14 C 0.153 3.847 15 H -0.007 1.007 16 C -0.110 4.110 17 C -0.120 4.120 18 C 0.090 3.910 19 N -0.593 5.593 20 C 0.556 3.444 21 O -0.572 6.572 22 C -0.128 4.128 23 C -0.111 4.111 24 C -0.083 4.083 25 C -0.105 4.105 26 C -0.236 4.236 27 C 0.082 3.918 28 N -0.581 5.581 29 H 0.433 0.567 30 C 0.070 3.930 31 C -0.085 4.085 32 H 0.247 0.753 33 H 0.025 0.975 34 H -0.001 1.001 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.144 0.856 45 H 0.163 0.837 46 H 0.216 0.784 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.490 -28.563 7.870 31.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.217 1.217 5 H -0.221 1.221 6 H -0.186 1.186 7 C -0.362 4.362 8 H 0.107 0.893 9 N -0.337 5.337 10 C 0.058 3.942 11 C -0.156 4.156 12 C 0.027 3.973 13 H 0.106 0.894 14 C 0.045 3.955 15 H 0.010 0.990 16 C -0.148 4.148 17 C -0.159 4.159 18 C -0.031 4.031 19 N -0.325 5.325 20 C 0.347 3.653 21 O -0.453 6.453 22 C -0.132 4.132 23 C -0.131 4.131 24 C -0.101 4.101 25 C -0.110 4.110 26 C -0.260 4.260 27 C -0.046 4.046 28 N -0.185 5.185 29 H 0.273 0.727 30 C -0.038 4.038 31 C -0.106 4.106 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.017 0.983 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.132 0.868 41 H 0.114 0.886 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.162 0.838 45 H 0.181 0.819 46 H 0.232 0.768 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 10.981 -28.147 7.776 31.198 hybrid contribution -0.316 1.862 -0.276 1.908 sum 10.665 -26.285 7.500 29.341 Atomic orbital electron populations 1.70201 1.06625 1.25369 1.58102 1.25722 0.96494 1.01247 1.02714 0.85059 0.78026 0.79090 0.77147 1.21732 1.22150 1.18644 1.19402 0.91848 0.83326 1.41669 0.89322 1.44355 1.02315 1.02033 1.84959 1.21428 0.84070 0.91364 0.97299 1.22770 0.96061 0.95375 1.01429 1.22044 0.96169 0.80151 0.98896 0.89449 1.20936 0.94571 0.85319 0.94684 0.99000 1.21402 0.94918 0.97309 1.01196 1.21975 1.00069 0.92534 1.01292 1.22707 0.78375 1.01235 1.00742 1.47942 1.13164 1.06792 1.64574 1.18720 0.83858 0.86235 0.76470 1.90749 1.23925 1.81620 1.49032 1.19393 1.02234 0.91862 0.99755 1.20642 1.00200 0.93764 0.98469 1.20355 0.97139 0.94115 0.98530 1.19804 0.99674 0.95328 0.96222 1.22051 1.05518 0.96092 1.02338 1.22592 0.99703 0.86675 0.95599 1.41848 1.41343 1.07934 1.27388 0.72702 1.18093 0.98204 0.92432 0.95032 1.20484 0.97716 0.92752 0.99659 0.94416 0.95633 0.98295 0.90811 0.91745 0.92526 0.91200 0.92558 0.86804 0.88564 0.86518 0.86544 0.83812 0.81944 0.76782 0.82805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.04 10.53 21.65 0.23 -59.81 16 2 C -0.07 -4.05 5.47 84.86 0.46 -3.58 16 3 Si 0.98 46.61 29.56 68.60 2.03 48.63 16 4 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.23 -13.35 9.92 84.03 0.83 -12.51 16 8 H 0.09 4.75 7.36 -2.92 -0.02 4.73 16 9 N -0.61 -33.14 3.35 -670.50 -2.25 -35.38 16 10 C 0.18 10.14 5.47 86.87 0.48 10.61 16 11 C -0.12 -5.46 5.11 31.60 0.16 -5.30 16 12 C 0.13 5.20 3.32 46.14 0.15 5.36 16 13 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 14 C 0.15 6.63 2.57 45.50 0.12 6.75 16 15 H -0.01 -0.36 8.06 -2.38 -0.02 -0.38 16 16 C -0.11 -3.63 5.46 30.26 0.17 -3.47 16 17 C -0.12 -2.74 5.94 30.93 0.18 -2.55 16 18 C 0.09 1.89 4.77 86.17 0.41 2.30 16 19 N -0.59 -18.73 2.91 -794.01 -2.31 -21.04 16 20 C 0.56 19.13 7.42 86.71 0.64 19.77 16 21 O -0.57 -24.51 13.47 -3.99 -0.05 -24.57 16 22 C -0.13 -3.46 5.44 -20.08 -0.11 -3.57 16 23 C -0.11 -2.91 9.52 22.28 0.21 -2.70 16 24 C -0.08 -1.75 10.03 22.20 0.22 -1.52 16 25 C -0.10 -1.97 6.37 -20.14 -0.13 -2.10 16 26 C -0.24 -2.89 11.08 23.49 0.26 -2.63 16 27 C 0.08 0.57 11.81 83.09 0.98 1.55 16 28 N -0.58 -5.15 6.07 -187.71 -1.14 -6.29 16 29 H 0.43 1.06 8.96 -92.71 -0.83 0.23 16 30 C 0.07 1.18 7.26 38.96 0.28 1.46 16 31 C -0.09 -1.67 7.43 22.63 0.17 -1.50 16 32 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 33 H 0.03 1.52 7.23 -2.39 -0.02 1.50 16 34 H 0.00 -0.08 7.80 -2.39 -0.02 -0.09 16 35 H 0.07 3.65 6.03 -2.39 -0.01 3.64 16 36 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 37 H 0.06 1.98 7.71 -2.39 -0.02 1.96 16 38 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.10 1.52 8.03 -2.39 -0.02 1.50 16 42 H 0.12 1.99 4.43 -2.39 -0.01 1.97 16 43 H 0.12 3.31 7.94 -2.91 -0.02 3.28 16 44 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 45 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 46 H 0.22 -0.45 8.06 -2.91 -0.02 -0.47 16 47 H 0.15 2.28 5.70 -2.91 -0.02 2.26 16 Total: -1.00 -81.98 364.04 2.18 -79.80 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.17 Total: 12.29 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 5.50 Total: 6.36 kcal Atomic # 7 Polarization: -117.05 SS G_CDS: -5.47 Total: -122.52 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.05 Total: -24.57 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Total: -81.98 2.18 -79.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049754041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.104 kcal (2) G-P(sol) polarization free energy of solvation -81.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds