Wall clock time and date at job start Tue Mar 31 2020 22:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 120.00154 * 2 1 4 4 H 1.48499 * 109.46893 * 269.99745 * 3 2 1 5 5 H 1.48505 * 109.46904 * 29.99827 * 3 2 1 6 6 H 1.48501 * 109.47055 * 149.99836 * 3 2 1 7 7 C 1.38812 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99900 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00068 * 359.97438 * 7 2 1 10 10 C 1.46876 * 125.58136 * 0.02757 * 9 7 2 11 11 C 1.54066 * 107.70846 * 177.00562 * 10 9 7 12 12 C 1.54567 * 103.66634 * 342.84374 * 11 10 9 13 13 H 1.09004 * 108.78887 * 273.79777 * 12 11 10 14 14 C 1.47661 * 125.57986 * 180.02562 * 9 7 2 15 15 H 1.09000 * 110.56620 * 322.61098 * 14 9 7 16 16 C 1.52925 * 107.99131 * 83.63389 * 14 9 7 17 17 C 1.52939 * 109.79213 * 171.84055 * 16 14 9 18 18 C 1.53051 * 108.49258 * 294.00957 * 17 16 14 19 19 N 1.44191 * 111.47770 * 153.28565 * 12 11 10 20 20 C 1.34782 * 117.75913 * 93.66195 * 19 12 11 21 21 O 1.21585 * 120.00099 * 194.35409 * 20 19 12 22 22 C 1.47583 * 119.99629 * 14.35741 * 20 19 12 23 23 C 1.40232 * 119.83067 * 310.18730 * 22 20 19 24 24 C 1.36201 * 120.37505 * 180.18360 * 23 22 20 25 25 C 1.39920 * 119.95795 * 359.60653 * 24 23 22 26 26 C 1.46252 * 133.83338 * 180.21107 * 25 24 23 27 27 C 1.34453 * 107.03527 * 180.02562 * 26 25 24 28 28 N 1.36569 * 109.97147 * 0.02562 * 27 26 25 29 29 H 0.97002 * 125.06784 * 179.97438 * 28 27 26 30 30 C 1.37814 * 109.86144 * 359.97438 * 28 27 26 31 31 C 1.38693 * 133.37592 * 180.02562 * 30 28 27 32 32 H 0.97002 * 119.99634 * 0.02562 * 1 2 3 33 33 H 1.09007 * 109.81360 * 296.55037 * 10 9 7 34 34 H 1.08998 * 109.81298 * 57.45363 * 10 9 7 35 35 H 1.08994 * 110.56952 * 101.42684 * 11 10 9 36 36 H 1.08996 * 110.57092 * 224.15787 * 11 10 9 37 37 H 1.08999 * 109.41449 * 51.73828 * 16 14 9 38 38 H 1.09002 * 109.41646 * 291.94459 * 16 14 9 39 39 H 1.08997 * 109.63298 * 174.30928 * 17 16 14 40 40 H 1.08998 * 109.79556 * 53.81188 * 17 16 14 41 41 H 1.09001 * 109.46189 * 293.77509 * 18 17 16 42 42 H 1.09000 * 109.45633 * 173.82393 * 18 17 16 43 43 H 1.07999 * 119.81617 * 0.06752 * 23 22 20 44 44 H 1.08003 * 120.02204 * 179.88294 * 24 23 22 45 45 H 1.08006 * 126.48521 * 0.02562 * 26 25 24 46 46 H 1.07994 * 125.01764 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.16438 * 359.97438 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1363 -2.5309 0.0017 11 6 -0.4602 -4.0352 -0.0736 12 6 0.8637 -4.6701 -0.5564 13 1 0.8916 -4.6385 -1.6456 14 6 1.9359 -3.7326 0.0028 15 1 2.8325 -3.7467 -0.6169 16 6 2.2780 -4.0948 1.4486 17 6 2.7247 -5.5555 1.5248 18 6 1.5323 -6.4469 1.1698 19 7 0.9838 -6.0385 -0.1178 20 6 0.5648 -7.0059 -0.9574 21 8 0.3999 -8.1382 -0.5463 22 6 0.3062 -6.6908 -2.3758 23 6 -0.4967 -5.5910 -2.7109 24 6 -0.7457 -5.2922 -4.0162 25 6 -0.1921 -6.0803 -5.0312 26 6 -0.2513 -6.0389 -6.4919 27 6 0.4874 -7.0668 -6.9454 28 7 1.0137 -7.7623 -5.8945 29 1 1.5811 -8.5452 -5.9726 30 6 0.6184 -7.1861 -4.7067 31 6 0.8631 -7.4857 -3.3748 32 1 -0.4850 0.8401 -0.0004 33 1 -0.5486 -2.1097 0.9187 34 1 -0.5576 -2.0185 -0.8632 35 1 -0.7333 -4.4178 0.9097 36 1 -1.2601 -4.2193 -0.7908 37 1 1.3982 -3.9516 2.0759 38 1 3.0829 -3.4507 1.8028 39 1 3.0636 -5.7826 2.5356 40 1 3.5361 -5.7307 0.8185 41 1 0.7653 -6.3505 1.9383 42 1 1.8595 -7.4850 1.1119 43 1 -0.9216 -4.9784 -1.9295 44 1 -1.3664 -4.4449 -4.2677 45 1 -0.7871 -5.3189 -7.0928 46 1 0.6412 -7.3074 -7.9869 47 1 1.4826 -8.3309 -3.1136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049754044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:23 Heat of formation + Delta-G solvation = 74.799382 kcal Electronic energy + Delta-G solvation = -30258.156278 eV Core-core repulsion = 26407.632052 eV Total energy + Delta-G solvation = -3850.524227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.41869 -40.46028 -38.09039 -36.70631 -35.04189 -33.07794 -32.11259 -32.00781 -29.60127 -29.32887 -28.84841 -28.19940 -24.89391 -24.55245 -23.19486 -22.37174 -21.74231 -20.86188 -20.48675 -19.90646 -18.47553 -17.92548 -17.08003 -16.98218 -16.04602 -15.75241 -15.26499 -14.73768 -14.67732 -14.49352 -14.28734 -13.97527 -13.82015 -13.65463 -13.41248 -13.17708 -13.10788 -12.89764 -12.41868 -12.24075 -12.01084 -11.99891 -11.47147 -11.26996 -11.04542 -10.95395 -10.80550 -10.73782 -10.66282 -10.42349 -10.10595 -10.07946 -9.84066 -9.77468 -9.64907 -9.50508 -8.61819 -8.30159 -8.20149 -7.78603 -6.88569 -5.73787 -3.08098 0.89613 1.53592 2.50621 2.79340 3.03182 3.29186 3.39001 3.44562 3.45909 3.90554 4.44091 4.59114 4.70285 4.76630 5.04999 5.12298 5.22359 5.26390 5.26988 5.32037 5.35494 5.49411 5.51713 5.52933 5.60068 5.69964 5.77294 5.87707 5.88872 5.95568 6.06496 6.14646 6.21438 6.25357 6.32435 6.37019 6.50310 6.53788 6.55156 6.62845 6.69459 6.77512 6.95242 7.02711 7.07029 7.36879 7.53780 7.55974 7.61038 7.79617 8.21834 8.30935 9.18793 9.78373 10.42772 11.37205 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010988 B = 0.003985 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.542449 B = 7024.566674 C = 8731.521420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.180 3.820 11 C -0.163 4.163 12 C 0.117 3.883 13 H 0.102 0.898 14 C 0.162 3.838 15 H 0.055 0.945 16 C -0.131 4.131 17 C -0.132 4.132 18 C 0.120 3.880 19 N -0.582 5.582 20 C 0.559 3.441 21 O -0.544 6.544 22 C -0.105 4.105 23 C -0.130 4.130 24 C -0.074 4.074 25 C -0.091 4.091 26 C -0.206 4.206 27 C 0.052 3.948 28 N -0.595 5.595 29 H 0.415 0.585 30 C 0.083 3.917 31 C -0.077 4.077 32 H 0.252 0.748 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.150 0.850 44 H 0.130 0.870 45 H 0.148 0.852 46 H 0.170 0.830 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.133 -14.706 -9.192 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.201 4.201 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.055 3.945 11 C -0.202 4.202 12 C 0.012 3.988 13 H 0.120 0.880 14 C 0.054 3.946 15 H 0.073 0.927 16 C -0.171 4.171 17 C -0.170 4.170 18 C -0.002 4.002 19 N -0.312 5.312 20 C 0.348 3.652 21 O -0.423 6.423 22 C -0.109 4.109 23 C -0.149 4.149 24 C -0.092 4.092 25 C -0.096 4.096 26 C -0.232 4.232 27 C -0.075 4.075 28 N -0.197 5.197 29 H 0.251 0.749 30 C -0.023 4.023 31 C -0.099 4.099 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.167 0.833 44 H 0.148 0.852 45 H 0.165 0.835 46 H 0.187 0.813 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.074 -15.101 -8.967 17.596 hybrid contribution 0.709 0.664 -0.050 0.972 sum 1.783 -14.438 -9.018 17.116 Atomic orbital electron populations 1.69955 1.04834 1.25069 1.56898 1.24773 0.95686 0.97560 1.02098 0.86141 0.78600 0.83564 0.77576 1.21590 1.21707 1.20737 1.19010 0.90428 0.82107 1.43957 0.90424 1.44486 1.01393 0.99230 1.86802 1.21060 0.84448 0.87508 1.01491 1.23397 0.96136 1.00079 1.00585 1.21682 0.97047 0.79674 1.00409 0.88019 1.20826 0.93940 0.85996 0.93856 0.92663 1.22124 1.01545 0.93546 0.99914 1.21858 0.97116 0.96672 1.01380 1.21315 0.95718 0.98941 0.84259 1.46972 1.61126 1.06329 1.16803 1.18388 0.76736 0.84561 0.85543 1.90745 1.51741 1.21806 1.77965 1.19482 1.01552 0.97356 0.92516 1.21568 0.99095 0.96442 0.97751 1.20255 0.99109 0.98802 0.91042 1.19388 1.00133 0.96322 0.93754 1.21750 1.07088 1.02048 0.92279 1.21827 0.98622 0.94562 0.92480 1.41718 1.45755 1.28227 1.04047 0.74858 1.18011 1.00858 0.96403 0.87052 1.19821 1.01802 0.99888 0.88375 0.93720 0.94038 0.92740 0.91856 0.91272 0.91930 0.91855 0.91109 0.91833 0.92059 0.90003 0.83254 0.85207 0.83474 0.81284 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.99 10.29 55.49 0.57 -25.41 16 2 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 3 Si 0.91 21.53 29.55 -169.99 -5.02 16.50 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.23 -6.01 10.27 -15.06 -0.15 -6.17 16 8 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 9 N -0.59 -14.20 2.93 -163.87 -0.48 -14.68 16 10 C 0.18 4.12 5.39 -3.28 -0.02 4.10 16 11 C -0.16 -2.95 5.99 -25.35 -0.15 -3.10 16 12 C 0.12 2.03 2.27 -68.33 -0.16 1.87 16 13 H 0.10 1.81 4.63 -51.93 -0.24 1.56 16 14 C 0.16 3.18 3.27 -67.33 -0.22 2.96 16 15 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 16 C -0.13 -2.30 5.31 -26.80 -0.14 -2.44 16 17 C -0.13 -1.85 6.10 -26.74 -0.16 -2.01 16 18 C 0.12 1.76 6.16 -4.40 -0.03 1.73 16 19 N -0.58 -9.43 2.79 -168.56 -0.47 -9.90 16 20 C 0.56 9.43 7.05 -12.45 -0.09 9.34 16 21 O -0.54 -10.32 16.46 5.29 0.09 -10.24 16 22 C -0.10 -1.63 5.06 -104.95 -0.53 -2.16 16 23 C -0.13 -1.94 7.25 -39.57 -0.29 -2.23 16 24 C -0.07 -1.02 10.03 -39.68 -0.40 -1.42 16 25 C -0.09 -1.22 6.37 -105.05 -0.67 -1.89 16 26 C -0.21 -2.21 11.08 -37.70 -0.42 -2.63 16 27 C 0.05 0.44 11.81 -16.78 -0.20 0.24 16 28 N -0.59 -5.56 6.07 -10.69 -0.06 -5.63 16 29 H 0.41 2.58 8.96 -40.82 -0.37 2.22 16 30 C 0.08 1.07 7.26 -84.01 -0.61 0.46 16 31 C -0.08 -1.08 9.74 -39.03 -0.38 -1.46 16 32 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.04 1.06 7.60 -51.93 -0.39 0.67 16 34 H 0.05 1.38 7.25 -51.93 -0.38 1.00 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.07 1.13 5.47 -51.93 -0.28 0.85 16 37 H 0.06 1.17 8.02 -51.93 -0.42 0.76 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.08 1.17 7.21 -51.93 -0.37 0.80 16 43 H 0.15 2.27 3.34 -52.49 -0.18 2.10 16 44 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 45 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 46 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 47 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 365.02 15.07 5.50 5.50 Total: -1.00 -31.82 365.02 -10.99 -42.81 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.40 Total: 6.07 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -4.71 Total: -5.02 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.45 Total: -55.62 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.82 -10.99 -42.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049754044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.605 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds