Wall clock time and date at job start Tue Mar 31 2020 22:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 120.00154 * 2 1 4 4 H 1.48499 * 109.46893 * 269.99745 * 3 2 1 5 5 H 1.48505 * 109.46904 * 29.99827 * 3 2 1 6 6 H 1.48501 * 109.47055 * 149.99836 * 3 2 1 7 7 C 1.38812 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99900 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00068 * 359.97438 * 7 2 1 10 10 C 1.46876 * 125.58136 * 0.02757 * 9 7 2 11 11 C 1.54066 * 107.70846 * 177.00562 * 10 9 7 12 12 C 1.54567 * 103.66634 * 342.84374 * 11 10 9 13 13 H 1.09004 * 108.78887 * 273.79777 * 12 11 10 14 14 C 1.47661 * 125.57986 * 180.02562 * 9 7 2 15 15 H 1.09000 * 110.56620 * 322.61098 * 14 9 7 16 16 C 1.52925 * 107.99131 * 83.63389 * 14 9 7 17 17 C 1.52939 * 109.79213 * 171.84055 * 16 14 9 18 18 C 1.53051 * 108.49258 * 294.00957 * 17 16 14 19 19 N 1.44191 * 111.47770 * 153.28565 * 12 11 10 20 20 C 1.34782 * 117.75913 * 93.66195 * 19 12 11 21 21 O 1.21585 * 120.00099 * 194.35409 * 20 19 12 22 22 C 1.47583 * 119.99629 * 14.35741 * 20 19 12 23 23 C 1.40232 * 119.83067 * 310.18730 * 22 20 19 24 24 C 1.36201 * 120.37505 * 180.18360 * 23 22 20 25 25 C 1.39920 * 119.95795 * 359.60653 * 24 23 22 26 26 C 1.46252 * 133.83338 * 180.21107 * 25 24 23 27 27 C 1.34453 * 107.03527 * 180.02562 * 26 25 24 28 28 N 1.36569 * 109.97147 * 0.02562 * 27 26 25 29 29 H 0.97002 * 125.06784 * 179.97438 * 28 27 26 30 30 C 1.37814 * 109.86144 * 359.97438 * 28 27 26 31 31 C 1.38693 * 133.37592 * 180.02562 * 30 28 27 32 32 H 0.97002 * 119.99634 * 0.02562 * 1 2 3 33 33 H 1.09007 * 109.81360 * 296.55037 * 10 9 7 34 34 H 1.08998 * 109.81298 * 57.45363 * 10 9 7 35 35 H 1.08994 * 110.56952 * 101.42684 * 11 10 9 36 36 H 1.08996 * 110.57092 * 224.15787 * 11 10 9 37 37 H 1.08999 * 109.41449 * 51.73828 * 16 14 9 38 38 H 1.09002 * 109.41646 * 291.94459 * 16 14 9 39 39 H 1.08997 * 109.63298 * 174.30928 * 17 16 14 40 40 H 1.08998 * 109.79556 * 53.81188 * 17 16 14 41 41 H 1.09001 * 109.46189 * 293.77509 * 18 17 16 42 42 H 1.09000 * 109.45633 * 173.82393 * 18 17 16 43 43 H 1.07999 * 119.81617 * 0.06752 * 23 22 20 44 44 H 1.08003 * 120.02204 * 179.88294 * 24 23 22 45 45 H 1.08006 * 126.48521 * 0.02562 * 26 25 24 46 46 H 1.07994 * 125.01764 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.16438 * 359.97438 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1363 -2.5309 0.0017 11 6 -0.4602 -4.0352 -0.0736 12 6 0.8637 -4.6701 -0.5564 13 1 0.8916 -4.6385 -1.6456 14 6 1.9359 -3.7326 0.0028 15 1 2.8325 -3.7467 -0.6169 16 6 2.2780 -4.0948 1.4486 17 6 2.7247 -5.5555 1.5248 18 6 1.5323 -6.4469 1.1698 19 7 0.9838 -6.0385 -0.1178 20 6 0.5648 -7.0059 -0.9574 21 8 0.3999 -8.1382 -0.5463 22 6 0.3062 -6.6908 -2.3758 23 6 -0.4967 -5.5910 -2.7109 24 6 -0.7457 -5.2922 -4.0162 25 6 -0.1921 -6.0803 -5.0312 26 6 -0.2513 -6.0389 -6.4919 27 6 0.4874 -7.0668 -6.9454 28 7 1.0137 -7.7623 -5.8945 29 1 1.5811 -8.5452 -5.9726 30 6 0.6184 -7.1861 -4.7067 31 6 0.8631 -7.4857 -3.3748 32 1 -0.4850 0.8401 -0.0004 33 1 -0.5486 -2.1097 0.9187 34 1 -0.5576 -2.0185 -0.8632 35 1 -0.7333 -4.4178 0.9097 36 1 -1.2601 -4.2193 -0.7908 37 1 1.3982 -3.9516 2.0759 38 1 3.0829 -3.4507 1.8028 39 1 3.0636 -5.7826 2.5356 40 1 3.5361 -5.7307 0.8185 41 1 0.7653 -6.3505 1.9383 42 1 1.8595 -7.4850 1.1119 43 1 -0.9216 -4.9784 -1.9295 44 1 -1.3664 -4.4449 -4.2677 45 1 -0.7871 -5.3189 -7.0928 46 1 0.6412 -7.3074 -7.9869 47 1 1.4826 -8.3309 -3.1136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049754044.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:22 Heat of formation + Delta-G solvation = 57.017905 kcal Electronic energy + Delta-G solvation = -30258.927341 eV Core-core repulsion = 26407.632052 eV Total energy + Delta-G solvation = -3851.295289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.45430 -41.66839 -39.58066 -37.75919 -36.63174 -34.43039 -33.96161 -32.97451 -30.92700 -30.63512 -30.11643 -29.58952 -26.48656 -26.14707 -24.36360 -23.46155 -23.11477 -22.18284 -21.58604 -21.37418 -19.66057 -19.17095 -18.71319 -18.18014 -17.30987 -17.09382 -16.66680 -16.46026 -16.00990 -15.72272 -15.38215 -15.35604 -14.97406 -14.86678 -14.77499 -14.39333 -14.26935 -14.06235 -13.88219 -13.73434 -13.56422 -13.29133 -12.88395 -12.74721 -12.57746 -12.42528 -12.34272 -12.22804 -12.07511 -11.96978 -11.77517 -11.58530 -11.51422 -11.33753 -10.90144 -10.74671 -10.64209 -9.67007 -9.20493 -8.85814 -8.68498 -7.80198 -5.15765 -0.12814 0.47888 1.46428 1.49487 1.50311 1.58584 1.79641 1.95652 2.28698 2.52720 2.83753 3.34083 3.37328 3.64396 3.76549 3.78864 3.83592 3.95093 4.01448 4.06770 4.11866 4.19832 4.32931 4.35783 4.37083 4.56107 4.61522 4.65672 4.67640 4.68561 4.81191 4.87546 4.97200 5.02823 5.03228 5.06861 5.12858 5.32558 5.34341 5.46731 5.50800 5.56782 5.59800 5.65768 5.69972 5.77891 5.79547 6.10712 6.20236 6.28973 6.70378 6.99549 7.14239 7.80195 8.43855 9.29461 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010988 B = 0.003985 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.542449 B = 7024.566674 C = 8731.521420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.060 4.060 3 Si 0.973 3.027 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.270 1.270 7 C -0.234 4.234 8 H 0.082 0.918 9 N -0.612 5.612 10 C 0.193 3.807 11 C -0.148 4.148 12 C 0.135 3.865 13 H 0.101 0.899 14 C 0.157 3.843 15 H 0.053 0.947 16 C -0.122 4.122 17 C -0.117 4.117 18 C 0.116 3.884 19 N -0.581 5.581 20 C 0.563 3.437 21 O -0.567 6.567 22 C -0.131 4.131 23 C -0.140 4.140 24 C -0.086 4.086 25 C -0.107 4.107 26 C -0.236 4.236 27 C 0.081 3.919 28 N -0.583 5.583 29 H 0.431 0.569 30 C 0.069 3.931 31 C -0.074 4.074 32 H 0.246 0.754 33 H 0.006 0.994 34 H 0.023 0.977 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.162 0.838 46 H 0.218 0.782 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.607 -16.578 -10.962 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.253 4.253 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.195 1.195 7 C -0.363 4.363 8 H 0.100 0.900 9 N -0.337 5.337 10 C 0.068 3.932 11 C -0.187 4.187 12 C 0.030 3.970 13 H 0.119 0.881 14 C 0.049 3.951 15 H 0.071 0.929 16 C -0.162 4.162 17 C -0.156 4.156 18 C -0.006 4.006 19 N -0.310 5.310 20 C 0.353 3.647 21 O -0.448 6.448 22 C -0.135 4.135 23 C -0.159 4.159 24 C -0.104 4.104 25 C -0.113 4.113 26 C -0.261 4.261 27 C -0.047 4.047 28 N -0.187 5.187 29 H 0.271 0.729 30 C -0.039 4.039 31 C -0.095 4.095 32 H 0.055 0.945 33 H 0.024 0.976 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.117 0.883 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.157 0.843 44 H 0.155 0.845 45 H 0.180 0.820 46 H 0.235 0.765 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.591 -17.024 -10.733 20.291 hybrid contribution 0.277 1.174 0.360 1.259 sum 2.867 -15.850 -10.373 19.158 Atomic orbital electron populations 1.70165 1.06130 1.25133 1.58326 1.25534 0.96485 1.00598 1.02709 0.85163 0.77686 0.79608 0.77382 1.21400 1.22364 1.19536 1.19356 0.90897 0.83302 1.42726 0.90030 1.44699 1.01932 1.00337 1.86703 1.20728 0.84060 0.90191 0.98255 1.23236 0.97331 0.96595 1.01553 1.21341 0.95447 0.80001 1.00202 0.88101 1.21022 0.94185 0.84539 0.95320 0.92920 1.21942 1.00588 0.96037 0.97681 1.21780 0.96903 0.93521 1.03374 1.21471 0.96020 0.99517 0.83561 1.46959 1.61120 1.05521 1.17426 1.18563 0.75967 0.84096 0.86051 1.90723 1.52927 1.22600 1.78501 1.19426 1.03411 0.98613 0.92079 1.21443 0.99797 0.96631 0.98004 1.20408 0.99564 0.99395 0.91052 1.19788 0.99908 0.96307 0.95266 1.22068 1.09038 1.03975 0.90992 1.22585 0.95600 0.92477 0.94026 1.41829 1.45275 1.28477 1.03086 0.72876 1.18059 1.01268 0.96841 0.87715 1.19936 1.01258 0.99580 0.88742 0.94471 0.97594 0.95836 0.91379 0.89417 0.93446 0.92796 0.88255 0.91049 0.91745 0.89066 0.84261 0.84480 0.82009 0.76534 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.74 10.29 21.65 0.22 -55.52 16 2 C -0.06 -3.33 5.49 84.86 0.47 -2.87 16 3 Si 0.97 45.02 29.55 68.60 2.03 47.05 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.23 -12.66 10.27 84.03 0.86 -11.80 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 9 N -0.61 -30.11 2.93 -672.36 -1.97 -32.08 16 10 C 0.19 9.28 5.39 86.67 0.47 9.75 16 11 C -0.15 -5.50 5.99 31.49 0.19 -5.31 16 12 C 0.14 4.74 2.27 45.96 0.10 4.84 16 13 H 0.10 3.63 4.63 -2.38 -0.01 3.62 16 14 C 0.16 6.17 3.27 44.75 0.15 6.31 16 15 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 16 C -0.12 -4.24 5.31 30.55 0.16 -4.08 16 17 C -0.12 -3.05 6.10 30.59 0.19 -2.87 16 18 C 0.12 3.22 6.16 86.53 0.53 3.75 16 19 N -0.58 -18.43 2.79 -805.45 -2.25 -20.68 16 20 C 0.56 18.72 7.05 86.71 0.61 19.33 16 21 O -0.57 -21.12 16.46 -3.98 -0.07 -21.19 16 22 C -0.13 -4.04 5.06 -20.08 -0.10 -4.14 16 23 C -0.14 -4.25 7.25 22.28 0.16 -4.09 16 24 C -0.09 -2.41 10.03 22.20 0.22 -2.19 16 25 C -0.11 -2.77 6.37 -20.14 -0.13 -2.90 16 26 C -0.24 -4.48 11.08 23.49 0.26 -4.22 16 27 C 0.08 1.04 11.81 83.09 0.98 2.02 16 28 N -0.58 -8.96 6.07 -187.72 -1.14 -10.10 16 29 H 0.43 3.76 8.96 -92.71 -0.83 2.93 16 30 C 0.07 1.65 7.26 38.96 0.28 1.93 16 31 C -0.07 -1.99 9.74 22.63 0.22 -1.77 16 32 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 33 H 0.01 0.32 7.60 -2.38 -0.02 0.30 16 34 H 0.02 1.26 7.25 -2.39 -0.02 1.24 16 35 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.09 2.95 5.47 -2.39 -0.01 2.94 16 37 H 0.05 1.78 8.02 -2.39 -0.02 1.76 16 38 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.09 2.43 7.21 -2.39 -0.02 2.41 16 43 H 0.14 4.37 3.34 -2.91 -0.01 4.36 16 44 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 45 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 46 H 0.22 0.67 8.06 -2.91 -0.02 0.64 16 47 H 0.13 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -71.33 365.02 2.63 -68.70 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.18 Total: 22.11 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 5.63 Total: 1.71 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -5.14 Total: -118.38 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.07 Total: -21.19 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -71.33 2.63 -68.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049754044.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.717 kcal (2) G-P(sol) polarization free energy of solvation -71.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds