Wall clock time and date at job start Tue Mar 31 2020 22:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 119.99882 * 2 1 4 4 H 1.48502 * 109.47234 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47390 * 299.99360 * 3 2 1 6 6 H 1.48503 * 109.47361 * 59.99695 * 3 2 1 7 7 C 1.38807 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00029 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00308 * 0.02562 * 7 2 1 10 10 C 1.47750 * 126.22091 * 359.59854 * 9 7 2 11 11 C 1.55477 * 106.84975 * 174.03001 * 10 9 7 12 12 C 1.53426 * 101.67501 * 337.88323 * 11 10 9 13 13 H 1.09001 * 111.75208 * 281.76953 * 12 11 10 14 14 C 1.45029 * 126.56421 * 180.02562 * 9 7 2 15 15 H 1.09001 * 108.70868 * 96.48380 * 14 9 7 16 16 C 1.51083 * 119.18324 * 331.20147 * 14 9 7 17 17 C 1.53870 * 107.40000 * 176.69643 * 16 14 9 18 18 C 1.52873 * 111.43608 * 56.89385 * 17 16 14 19 19 N 1.45723 * 116.38152 * 152.72091 * 12 11 10 20 20 C 1.34773 * 122.22419 * 9.91826 * 19 12 11 21 21 O 1.21591 * 120.00412 * 354.35229 * 20 19 12 22 22 C 1.47584 * 119.99819 * 174.35509 * 20 19 12 23 23 C 1.40246 * 119.83116 * 141.06154 * 22 20 19 24 24 C 1.36196 * 120.37634 * 179.73917 * 23 22 20 25 25 C 1.39916 * 119.96232 * 0.51017 * 24 23 22 26 26 C 1.46245 * 133.84083 * 179.76192 * 25 24 23 27 27 C 1.34452 * 107.03583 * 180.02562 * 26 25 24 28 28 N 1.36564 * 109.97561 * 0.02562 * 27 26 25 29 29 H 0.97003 * 125.06993 * 180.02562 * 28 27 26 30 30 C 1.37817 * 109.85904 * 359.97438 * 28 27 26 31 31 C 1.38687 * 133.37180 * 180.02562 * 30 28 27 32 32 H 0.97000 * 119.99997 * 0.02562 * 1 2 3 33 33 H 1.08998 * 109.62149 * 54.91787 * 10 9 7 34 34 H 1.08994 * 110.45596 * 293.61167 * 10 9 7 35 35 H 1.09002 * 110.98828 * 219.78239 * 11 10 9 36 36 H 1.09003 * 110.98348 * 95.97612 * 11 10 9 37 37 H 1.08993 * 109.88381 * 296.19711 * 16 14 9 38 38 H 1.09004 * 109.88392 * 57.20741 * 16 14 9 39 39 H 1.09010 * 109.06498 * 177.48944 * 17 16 14 40 40 H 1.08998 * 109.07177 * 296.43446 * 17 16 14 41 41 H 1.08997 * 109.14452 * 191.09127 * 18 17 16 42 42 H 1.08998 * 109.09646 * 71.90505 * 18 17 16 43 43 H 1.08003 * 119.80858 * 359.97438 * 23 22 20 44 44 H 1.08001 * 120.01683 * 180.27912 * 24 23 22 45 45 H 1.08001 * 126.48558 * 0.02562 * 26 25 24 46 46 H 1.07998 * 125.01437 * 180.02562 * 27 26 25 47 47 H 1.07999 * 120.16868 * 359.97438 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1432 -2.5482 0.0084 11 6 -0.4317 -4.0678 -0.1498 12 6 0.8687 -4.5653 -0.7943 13 1 0.9042 -4.3379 -1.8597 14 6 1.9024 -3.7187 0.0016 15 1 1.9337 -4.0854 1.0276 16 6 3.2564 -3.9351 -0.6327 17 6 3.6402 -5.4080 -0.4068 18 6 2.5821 -6.3544 -0.9740 19 7 1.2251 -5.9557 -0.5432 20 6 0.3745 -6.8210 0.0434 21 8 -0.6918 -6.4272 0.4750 22 6 0.7373 -8.2467 0.1618 23 6 0.4105 -8.9552 1.3272 24 6 0.7353 -10.2725 1.4461 25 6 1.4083 -10.9230 0.4061 26 6 1.8972 -12.2878 0.2133 27 6 2.4738 -12.3318 -1.0005 28 7 2.3943 -11.1071 -1.5995 29 1 2.7407 -10.8938 -2.4801 30 6 1.7476 -10.2197 -0.7666 31 6 1.4087 -8.8798 -0.8814 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5758 -1.9985 -0.8276 34 1 -0.5609 -2.1859 0.9476 35 1 -1.2836 -4.2370 -0.8084 36 1 -0.5911 -4.5379 0.8207 37 1 3.2031 -3.7255 -1.7010 38 1 3.9939 -3.2838 -0.1636 39 1 4.5953 -5.6058 -0.8936 40 1 3.7430 -5.5892 0.6631 41 1 2.7851 -7.3672 -0.6262 42 1 2.6318 -6.3335 -2.0627 43 1 -0.1050 -8.4543 2.1333 44 1 0.4769 -10.8137 2.3443 45 1 1.8113 -13.1056 0.9134 46 1 2.9323 -13.2066 -1.4374 47 1 1.6637 -8.3301 -1.7754 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049754045.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:25 Heat of formation + Delta-G solvation = 52.875157 kcal Electronic energy + Delta-G solvation = -29776.895792 eV Core-core repulsion = 25925.420859 eV Total energy + Delta-G solvation = -3851.474933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.32264 -41.58779 -39.45159 -37.53567 -36.96821 -34.31035 -33.97777 -32.92175 -31.04628 -30.47349 -29.94088 -29.48166 -26.48845 -26.22813 -24.11820 -23.55940 -22.84359 -22.30240 -21.56566 -21.41037 -20.28992 -18.71442 -18.66555 -17.77612 -17.18883 -16.92464 -16.77831 -16.39445 -15.92440 -15.69689 -15.44446 -15.33808 -15.26117 -14.76379 -14.73381 -14.45340 -14.25948 -14.09297 -13.84905 -13.76981 -13.40802 -13.17048 -12.91153 -12.77347 -12.75157 -12.59457 -12.28689 -12.16554 -12.01694 -11.83809 -11.78767 -11.73295 -11.59858 -11.43967 -10.79807 -10.68829 -10.37113 -9.61270 -9.22384 -8.92320 -8.64383 -7.84070 -5.22021 -0.15777 0.50399 1.45240 1.47096 1.57209 1.62377 1.85546 1.99646 2.28705 2.50001 2.89598 3.30780 3.34022 3.53502 3.76546 3.91150 3.96640 3.99852 4.03834 4.06566 4.20316 4.25336 4.31001 4.36783 4.39665 4.55270 4.57249 4.62206 4.69231 4.74070 4.77316 4.89938 4.99495 5.03494 5.05275 5.08630 5.13087 5.26565 5.33738 5.42466 5.47854 5.52955 5.59355 5.62715 5.69530 5.73540 5.80049 6.13365 6.18135 6.46572 6.73901 7.05635 7.15407 7.75369 8.44631 9.27331 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026706 B = 0.002707 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.190974 B =10341.009381 C =10961.083635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.291 1.291 6 H -0.297 1.297 7 C -0.232 4.232 8 H 0.090 0.910 9 N -0.611 5.611 10 C 0.185 3.815 11 C -0.119 4.119 12 C 0.132 3.868 13 H 0.087 0.913 14 C 0.153 3.847 15 H -0.005 1.005 16 C -0.109 4.109 17 C -0.120 4.120 18 C 0.097 3.903 19 N -0.593 5.593 20 C 0.557 3.443 21 O -0.572 6.572 22 C -0.126 4.126 23 C -0.112 4.112 24 C -0.081 4.081 25 C -0.106 4.106 26 C -0.235 4.235 27 C 0.081 3.919 28 N -0.582 5.582 29 H 0.433 0.567 30 C 0.071 3.929 31 C -0.082 4.082 32 H 0.246 0.754 33 H 0.029 0.971 34 H -0.004 1.004 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.114 0.886 40 H 0.056 0.944 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.116 0.884 44 H 0.144 0.856 45 H 0.163 0.837 46 H 0.215 0.785 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.517 -29.299 -5.813 31.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.264 4.264 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.218 1.218 6 H -0.224 1.224 7 C -0.361 4.361 8 H 0.107 0.893 9 N -0.335 5.335 10 C 0.059 3.941 11 C -0.158 4.158 12 C 0.027 3.973 13 H 0.105 0.895 14 C 0.045 3.955 15 H 0.012 0.988 16 C -0.148 4.148 17 C -0.159 4.159 18 C -0.023 4.023 19 N -0.325 5.325 20 C 0.348 3.652 21 O -0.453 6.453 22 C -0.130 4.130 23 C -0.132 4.132 24 C -0.100 4.100 25 C -0.111 4.111 26 C -0.259 4.259 27 C -0.046 4.046 28 N -0.186 5.186 29 H 0.272 0.728 30 C -0.037 4.037 31 C -0.103 4.103 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.014 0.986 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.132 0.868 40 H 0.075 0.925 41 H 0.129 0.871 42 H 0.112 0.888 43 H 0.134 0.866 44 H 0.162 0.838 45 H 0.181 0.819 46 H 0.232 0.768 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.011 -28.881 -5.724 31.099 hybrid contribution -0.319 1.872 0.154 1.905 sum 9.693 -27.010 -5.571 29.232 Atomic orbital electron populations 1.70205 1.06559 1.25202 1.58504 1.25728 0.96567 1.01276 1.02790 0.84972 0.78342 0.79252 0.76544 1.18469 1.21814 1.22391 1.19466 0.91070 0.83112 1.42429 0.89252 1.44225 1.02066 1.00949 1.86308 1.21320 0.84020 0.91083 0.97664 1.22786 0.96289 0.95125 1.01550 1.22068 0.96254 0.80255 0.98738 0.89513 1.20943 0.94472 0.84927 0.95171 0.98783 1.21394 0.95319 0.97239 1.00839 1.21925 0.99570 0.92473 1.01893 1.22403 0.79071 1.00021 1.00834 1.47960 1.15754 1.09348 1.59394 1.18737 0.83398 0.86339 0.76737 1.90755 1.25770 1.79133 1.49603 1.19380 1.04162 0.92100 0.97347 1.20633 1.00814 0.94841 0.96953 1.20352 0.97746 0.93103 0.98786 1.19789 1.01433 0.95634 0.94243 1.22047 1.08820 0.95309 0.99753 1.22588 0.99818 0.88745 0.93498 1.41853 1.50232 1.08377 1.18110 0.72754 1.18077 1.01151 0.91686 0.92745 1.20293 0.98831 0.91873 0.99272 0.94470 0.95312 0.98552 0.91843 0.90819 0.91234 0.92467 0.86789 0.92535 0.87136 0.88776 0.86571 0.83785 0.81924 0.76812 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.06 10.41 21.65 0.23 -59.84 16 2 C -0.07 -4.17 5.49 84.86 0.47 -3.70 16 3 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 7 C -0.23 -13.21 9.94 84.03 0.84 -12.38 16 8 H 0.09 4.77 7.32 -2.91 -0.02 4.75 16 9 N -0.61 -33.04 3.32 -672.07 -2.23 -35.27 16 10 C 0.18 10.20 5.45 86.99 0.47 10.68 16 11 C -0.12 -5.52 5.11 31.59 0.16 -5.36 16 12 C 0.13 5.19 3.33 46.15 0.15 5.34 16 13 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 14 C 0.15 6.62 2.60 45.51 0.12 6.74 16 15 H -0.01 -0.25 8.06 -2.39 -0.02 -0.27 16 16 C -0.11 -3.62 5.44 30.26 0.16 -3.46 16 17 C -0.12 -2.75 5.94 30.85 0.18 -2.57 16 18 C 0.10 2.08 4.84 86.08 0.42 2.49 16 19 N -0.59 -18.76 2.91 -794.48 -2.32 -21.07 16 20 C 0.56 19.15 7.33 86.71 0.64 19.79 16 21 O -0.57 -24.53 13.62 -4.00 -0.05 -24.59 16 22 C -0.13 -3.38 5.24 -20.07 -0.11 -3.49 16 23 C -0.11 -2.93 9.54 22.28 0.21 -2.72 16 24 C -0.08 -1.71 10.03 22.20 0.22 -1.48 16 25 C -0.11 -1.98 6.37 -20.14 -0.13 -2.11 16 26 C -0.23 -2.89 11.08 23.49 0.26 -2.63 16 27 C 0.08 0.57 11.81 83.09 0.98 1.55 16 28 N -0.58 -5.30 6.07 -187.72 -1.14 -6.44 16 29 H 0.43 1.23 8.96 -92.71 -0.83 0.40 16 30 C 0.07 1.21 7.26 38.96 0.28 1.49 16 31 C -0.08 -1.62 7.43 22.63 0.17 -1.45 16 32 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 33 H 0.03 1.73 7.11 -2.39 -0.02 1.71 16 34 H 0.00 -0.23 7.82 -2.39 -0.02 -0.25 16 35 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.07 3.65 6.02 -2.39 -0.01 3.64 16 37 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 38 H 0.06 1.99 7.73 -2.38 -0.02 1.97 16 39 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.11 1.94 4.85 -2.39 -0.01 1.93 16 42 H 0.09 1.53 8.09 -2.39 -0.02 1.51 16 43 H 0.12 3.26 8.04 -2.91 -0.02 3.23 16 44 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 45 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 46 H 0.22 -0.42 8.06 -2.91 -0.02 -0.44 16 47 H 0.15 2.27 6.41 -2.91 -0.02 2.25 16 Total: -1.00 -81.53 365.01 2.19 -79.34 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.17 Total: 12.36 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 5.50 Total: 6.73 kcal Atomic # 7 Polarization: -117.16 SS G_CDS: -5.46 Total: -122.62 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.05 Total: -24.59 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -81.53 2.19 -79.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049754045.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.219 kcal (2) G-P(sol) polarization free energy of solvation -81.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds