Wall clock time and date at job start Tue Mar 31 2020 22:13:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31626 * 1
3 3 Si 1.86808 * 119.99782 * 2 1
4 4 H 1.48500 * 109.47107 * 275.33185 * 3 2 1
5 5 H 1.48499 * 109.46893 * 35.33064 * 3 2 1
6 6 H 1.48496 * 109.47064 * 155.33278 * 3 2 1
7 7 C 1.38812 * 120.00267 * 180.02562 * 2 1 3
8 8 H 1.07993 * 119.99785 * 326.29685 * 7 2 1
9 9 N 1.36932 * 120.00020 * 146.02857 * 7 2 1
10 10 C 1.46882 * 120.46719 * 336.08178 * 9 7 2
11 11 C 1.52858 * 109.02200 * 235.49220 * 10 9 7
12 12 C 1.52675 * 109.17462 * 307.82049 * 11 10 9
13 13 C 1.53476 * 113.62392 * 188.98721 * 12 11 10
14 14 N 1.47668 * 85.98921 * 137.70983 * 13 12 11
15 15 C 1.34774 * 134.45709 * 155.70831 * 14 13 12
16 16 O 1.21616 * 120.00076 * 173.61446 * 15 14 13
17 17 C 1.47372 * 120.00132 * 353.60797 * 15 14 13
18 18 C 1.39316 * 120.34811 * 22.51680 * 17 15 14
19 19 C 1.38272 * 120.20369 * 180.02562 * 18 17 15
20 20 C 1.38054 * 120.88424 * 359.97438 * 19 18 17
21 21 C 1.38977 * 120.26864 * 359.97438 * 20 19 18
22 22 N 1.37800 * 133.37300 * 180.02562 * 21 20 19
23 23 H 0.97003 * 125.07400 * 359.97290 * 22 21 20
24 24 C 1.36561 * 109.84944 * 179.27266 * 22 21 20
25 25 C 1.34549 * 109.89613 * 0.67181 * 24 22 21
26 26 C 1.40669 * 119.51921 * 359.74326 * 21 20 19
27 27 C 1.47663 * 91.08458 * 335.68053 * 14 13 12
28 28 C 1.52675 * 113.18454 * 57.45705 * 12 11 10
29 29 C 1.46878 * 120.46403 * 156.36447 * 9 7 2
30 30 H 0.96995 * 120.00111 * 0.02562 * 1 2 3
31 31 H 1.09003 * 109.58990 * 355.32073 * 10 9 7
32 32 H 1.08998 * 109.58702 * 115.74905 * 10 9 7
33 33 H 1.08993 * 109.61119 * 187.84225 * 11 10 9
34 34 H 1.08999 * 109.44745 * 67.69125 * 11 10 9
35 35 H 1.09006 * 113.79474 * 251.97536 * 13 12 11
36 36 H 1.09010 * 113.79013 * 23.44103 * 13 12 11
37 37 H 1.08007 * 119.89534 * 0.02562 * 18 17 15
38 38 H 1.07997 * 119.55325 * 179.97438 * 19 18 17
39 39 H 1.07997 * 119.86668 * 179.97438 * 20 19 18
40 40 H 1.07994 * 125.04800 * 180.08497 * 24 22 21
41 41 H 1.07998 * 126.49335 * 179.44483 * 25 24 22
42 42 H 1.09001 * 113.79646 * 270.05203 * 27 14 13
43 43 H 1.08998 * 113.79321 * 138.58396 * 27 14 13
44 44 H 1.09005 * 109.52860 * 182.52538 * 28 12 11
45 45 H 1.08997 * 109.59258 * 62.34245 * 28 12 11
46 46 H 1.09006 * 109.58819 * 244.25213 * 29 9 7
47 47 H 1.08994 * 109.59340 * 4.68268 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.3850 2.1116 -1.3940
5 1 1.5085 2.6176 0.8097
6 1 3.5996 1.4104 0.5843
7 6 2.0104 -1.2021 -0.0005
8 1 1.6065 -2.0590 0.5180
9 7 3.2044 -1.3030 -0.6632
10 6 3.5199 -0.3930 -1.7722
11 6 3.8606 -1.2187 -3.0127
12 6 4.9367 -2.2409 -2.6546
13 6 5.5133 -2.9784 -3.8707
14 7 6.8296 -2.7965 -3.2265
15 6 8.0116 -3.4403 -3.2961
16 8 8.9844 -2.9893 -2.7223
17 6 8.1252 -4.6910 -4.0673
18 6 7.2138 -4.9781 -5.0811
19 6 7.3229 -6.1527 -5.8025
20 6 8.3304 -7.0577 -5.5347
21 6 9.2555 -6.7993 -4.5303
22 7 10.3429 -7.4922 -4.0442
23 1 10.6475 -8.3529 -4.3721
24 6 10.9370 -6.7792 -3.0424
25 6 10.2648 -5.6321 -2.8361
26 6 9.1613 -5.6059 -3.7916
27 6 6.3320 -1.6262 -2.4761
28 6 4.5279 -3.1692 -1.5135
29 6 4.1851 -2.3266 -0.2791
30 1 -0.4850 0.8400 -0.0004
31 1 2.6577 0.2400 -1.9821
32 1 4.3747 0.2276 -1.5038
33 1 4.2300 -0.5613 -3.7996
34 1 2.9670 -1.7370 -3.3603
35 1 5.1994 -4.0198 -3.9430
36 1 5.4036 -2.4333 -4.8083
37 1 6.4196 -4.2810 -5.3043
38 1 6.6104 -6.3648 -6.5859
39 1 8.3999 -7.9703 -6.1081
40 1 11.8105 -7.0941 -2.4909
41 1 10.4977 -4.8741 -2.1028
42 1 6.4654 -0.6792 -2.9991
43 1 6.6685 -1.5927 -1.4399
44 1 5.3526 -3.8420 -1.2779
45 1 3.6559 -3.7517 -1.8107
46 1 5.0879 -1.8450 0.0968
47 1 3.7611 -2.9671 0.4943
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001050675352.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:13:50
Heat of formation + Delta-G solvation = 97.191948 kcal
Electronic energy + Delta-G solvation = -29384.283670 eV
Core-core repulsion = 25534.730458 eV
Total energy + Delta-G solvation = -3849.553212 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.54527 -40.66450 -38.35386 -36.84302 -36.06681 -32.56627 -32.15025 -30.92570
-30.41828 -29.71736 -29.13004 -27.17201 -26.27649 -24.27265 -23.44716 -22.77341
-21.95533 -21.19048 -20.95896 -19.72676 -18.16210 -17.92347 -17.14354 -16.47540
-16.02280 -15.90616 -15.67173 -15.18238 -15.05274 -14.73796 -14.33132 -14.14130
-13.82342 -13.67105 -13.46927 -13.26141 -13.10100 -12.95448 -12.78937 -12.34071
-12.14681 -12.03407 -11.90869 -11.74470 -11.65718 -11.57684 -11.42217 -10.65131
-10.56113 -10.48978 -10.06226 -10.01096 -9.94357 -9.87936 -9.55433 -9.34698
-8.59785 -8.49820 -8.46482 -7.94436 -7.01394 -6.00722 -3.20555 0.52443
1.32587 2.49345 2.79379 2.86871 2.92411 3.36120 3.52881 3.59161
3.78372 4.30122 4.47515 4.55990 4.57165 4.68604 4.82478 4.89482
4.94731 5.00923 5.11686 5.17904 5.32135 5.36562 5.40701 5.40887
5.49119 5.52907 5.63023 5.78912 5.83611 5.88508 5.94218 6.01998
6.08365 6.16463 6.19689 6.21692 6.34796 6.39196 6.41585 6.48626
6.54653 6.67135 6.71819 6.75397 6.84471 6.97362 7.23549 7.78941
7.95566 8.25618 8.30950 8.96426 9.74899 10.13489 11.14411
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.024378 B = 0.002605 C = 0.002542
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1148.281594 B =10744.474861 C =11010.193558
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.889 5.889
2 C 0.032 3.968
3 Si 0.854 3.146
4 H -0.287 1.287
5 H -0.301 1.301
6 H -0.272 1.272
7 C -0.266 4.266
8 H 0.083 0.917
9 N -0.601 5.601
10 C 0.136 3.864
11 C -0.120 4.120
12 C -0.076 4.076
13 C 0.098 3.902
14 N -0.634 5.634
15 C 0.578 3.422
16 O -0.539 6.539
17 C -0.079 4.079
18 C -0.115 4.115
19 C -0.108 4.108
20 C -0.108 4.108
21 C 0.085 3.915
22 N -0.597 5.597
23 H 0.415 0.585
24 C 0.047 3.953
25 C -0.186 4.186
26 C -0.061 4.061
27 C 0.117 3.883
28 C -0.108 4.108
29 C 0.149 3.851
30 H 0.262 0.738
31 H 0.074 0.926
32 H 0.020 0.980
33 H 0.058 0.942
34 H 0.073 0.927
35 H 0.086 0.914
36 H 0.087 0.913
37 H 0.135 0.865
38 H 0.132 0.868
39 H 0.122 0.878
40 H 0.172 0.828
41 H 0.154 0.846
42 H 0.083 0.917
43 H 0.083 0.917
44 H 0.056 0.944
45 H 0.069 0.931
46 H 0.022 0.978
47 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.089 -15.176 -13.161 27.032
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.530 5.530
2 C -0.168 4.168
3 Si 0.682 3.318
4 H -0.215 1.215
5 H -0.228 1.228
6 H -0.197 1.197
7 C -0.393 4.393
8 H 0.101 0.899
9 N -0.324 5.324
10 C 0.010 3.990
11 C -0.160 4.160
12 C -0.077 4.077
13 C -0.025 4.025
14 N -0.369 5.369
15 C 0.369 3.631
16 O -0.417 6.417
17 C -0.082 4.082
18 C -0.134 4.134
19 C -0.128 4.128
20 C -0.129 4.129
21 C -0.022 4.022
22 N -0.201 5.201
23 H 0.252 0.748
24 C -0.079 4.079
25 C -0.211 4.211
26 C -0.066 4.066
27 C -0.005 4.005
28 C -0.147 4.147
29 C 0.023 3.977
30 H 0.072 0.928
31 H 0.092 0.908
32 H 0.038 0.962
33 H 0.077 0.923
34 H 0.091 0.909
35 H 0.104 0.896
36 H 0.105 0.895
37 H 0.153 0.847
38 H 0.149 0.851
39 H 0.140 0.860
40 H 0.190 0.810
41 H 0.172 0.828
42 H 0.101 0.899
43 H 0.101 0.899
44 H 0.075 0.925
45 H 0.088 0.912
46 H 0.040 0.960
47 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 18.699 -15.067 -12.815 27.219
hybrid contribution 0.654 0.628 -0.227 0.935
sum 19.353 -14.439 -13.042 27.443
Atomic orbital electron populations
1.70053 1.06033 1.26724 1.50177 1.25141 0.94868 0.97346 0.99478
0.87272 0.81175 0.85999 0.77351 1.21499 1.22832 1.19706 1.18831
0.93734 0.96342 1.30406 0.89897 1.44331 1.17345 1.36557 1.34151
1.21094 0.98846 0.92212 0.86870 1.21887 0.97718 0.97287 0.99108
1.22008 0.93960 0.96540 0.95202 1.23577 0.79993 1.01604 0.97279
1.49922 1.10073 1.31217 1.45658 1.17808 0.81133 0.83548 0.80597
1.90756 1.35836 1.67989 1.47153 1.19294 0.96121 0.94506 0.98286
1.21464 0.98429 0.97826 0.95716 1.20733 0.98038 0.93788 1.00205
1.20152 0.94900 1.00630 0.97192 1.18159 0.91909 0.93481 0.98646
1.41710 1.25217 1.20408 1.32725 0.74792 1.21943 0.99665 0.93270
0.92998 1.21900 0.96909 0.99170 1.03151 1.18968 0.96291 0.93553
0.97820 1.23295 0.90748 0.88891 0.97526 1.21746 1.00371 0.96988
0.95630 1.20912 0.92051 0.90824 0.93958 0.92831 0.90766 0.96161
0.92349 0.90865 0.89616 0.89460 0.84746 0.85055 0.85973 0.81040
0.82827 0.89904 0.89886 0.92513 0.91192 0.96025 0.91761
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.55 13.97 55.49 0.78 -25.78 16
2 C 0.03 0.90 4.93 -17.43 -0.09 0.81 16
3 Si 0.85 21.58 25.09 -169.99 -4.26 17.31 16
4 H -0.29 -6.98 6.71 56.52 0.38 -6.60 16
5 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16
6 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16
7 C -0.27 -7.22 9.91 -15.06 -0.15 -7.37 16
8 H 0.08 2.40 8.03 -52.49 -0.42 1.98 16
9 N -0.60 -13.75 2.75 -172.51 -0.48 -14.23 16
10 C 0.14 2.80 4.23 -3.91 -0.02 2.79 16
11 C -0.12 -1.91 5.24 -26.97 -0.14 -2.05 16
12 C -0.08 -1.10 0.77 -154.42 -0.12 -1.22 16
13 C 0.10 1.15 5.47 -3.16 -0.02 1.13 16
14 N -0.63 -9.03 3.44 -181.53 -0.62 -9.66 16
15 C 0.58 9.23 7.85 -12.54 -0.10 9.13 16
16 O -0.54 -10.24 16.25 5.26 0.09 -10.15 16
17 C -0.08 -1.08 5.87 -104.75 -0.62 -1.70 16
18 C -0.11 -1.25 8.75 -39.17 -0.34 -1.59 16
19 C -0.11 -0.97 9.99 -39.64 -0.40 -1.36 16
20 C -0.11 -0.95 10.05 -39.38 -0.40 -1.34 16
21 C 0.08 0.90 7.27 -83.99 -0.61 0.29 16
22 N -0.60 -4.68 6.07 -10.66 -0.06 -4.75 16
23 H 0.42 1.77 8.96 -40.82 -0.37 1.40 16
24 C 0.05 0.40 11.82 -16.75 -0.20 0.20 16
25 C -0.19 -2.30 10.33 -37.78 -0.39 -2.69 16
26 C -0.06 -0.81 6.12 -104.85 -0.64 -1.45 16
27 C 0.12 1.72 7.63 -3.15 -0.02 1.70 16
28 C -0.11 -1.71 5.22 -26.72 -0.14 -1.85 16
29 C 0.15 2.85 6.38 -3.66 -0.02 2.83 16
30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
31 H 0.07 1.71 4.84 -51.93 -0.25 1.46 16
32 H 0.02 0.42 7.67 -51.93 -0.40 0.02 16
33 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16
34 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16
35 H 0.09 0.91 6.86 -51.93 -0.36 0.55 16
36 H 0.09 0.85 8.06 -51.92 -0.42 0.43 16
37 H 0.13 1.27 4.94 -52.48 -0.26 1.01 16
38 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16
39 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16
40 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16
41 H 0.15 2.04 7.43 -52.49 -0.39 1.65 16
42 H 0.08 1.13 8.07 -51.93 -0.42 0.72 16
43 H 0.08 1.33 7.41 -51.93 -0.38 0.94 16
44 H 0.06 0.86 8.01 -51.93 -0.42 0.44 16
45 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16
46 H 0.02 0.41 7.50 -51.93 -0.39 0.03 16
47 H 0.06 1.24 7.90 -51.93 -0.41 0.83 16
LS Contribution 368.90 15.07 5.56 5.56
Total: -1.00 -34.45 368.90 -9.99 -44.44
By element:
Atomic # 1 Polarization: 7.58 SS G_CDS: -6.57 Total: 1.00 kcal
Atomic # 6 Polarization: 0.65 SS G_CDS: -4.40 Total: -3.76 kcal
Atomic # 7 Polarization: -54.02 SS G_CDS: -0.39 Total: -54.41 kcal
Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal
Atomic # 14 Polarization: 21.58 SS G_CDS: -4.26 Total: 17.31 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -34.45 -9.99 -44.44 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001050675352.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 141.631 kcal
(2) G-P(sol) polarization free energy of solvation -34.451 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.180 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.439 kcal
(6) G-S(sol) free energy of system = (1) + (5) 97.192 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds