Wall clock time and date at job start Tue Mar 31 2020 22:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99744 * 2 1 4 4 H 1.48490 * 109.47173 * 269.99713 * 3 2 1 5 5 H 1.48502 * 109.47004 * 30.00138 * 3 2 1 6 6 H 1.48508 * 109.47099 * 149.99849 * 3 2 1 7 7 C 1.38806 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00307 * 176.10805 * 7 2 1 9 9 N 1.36935 * 120.00077 * 356.38253 * 7 2 1 10 10 C 1.44581 * 118.64777 * 214.82295 * 9 7 2 11 11 C 1.54862 * 109.59977 * 270.70615 * 10 9 7 12 12 C 1.47092 * 110.32441 * 288.73099 * 11 10 9 13 13 C 1.52574 * 114.32637 * 62.80390 * 12 11 10 14 14 H 1.08998 * 109.48821 * 34.97468 * 13 12 11 15 15 N 1.46494 * 109.49149 * 155.02348 * 13 12 11 16 16 C 1.34778 * 119.99967 * 205.00186 * 15 13 12 17 17 O 1.21583 * 120.00022 * 359.97438 * 16 15 13 18 18 C 1.47552 * 119.99990 * 179.97438 * 16 15 13 19 19 C 1.38703 * 120.38735 * 6.29192 * 18 16 15 20 20 C 1.38966 * 120.53275 * 179.67460 * 19 18 16 21 21 C 1.36211 * 121.23793 * 0.62679 * 20 19 18 22 22 C 1.40704 * 120.20457 * 359.67918 * 21 20 19 23 23 N 1.33690 * 120.95164 * 179.97438 * 22 21 20 24 24 C 1.31067 * 121.34451 * 180.02562 * 23 22 21 25 25 C 1.39338 * 121.70787 * 0.02562 * 24 23 22 26 26 C 1.36674 * 119.86718 * 359.97438 * 25 24 23 27 27 C 1.40465 * 118.17088 * 0.03969 * 26 25 24 28 28 C 1.50881 * 109.35629 * 274.98800 * 13 12 11 29 29 C 1.47612 * 118.64093 * 34.55798 * 9 7 2 30 30 H 0.97001 * 120.00617 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.44392 * 30.74373 * 10 9 7 32 32 H 1.08998 * 109.44993 * 150.66912 * 10 9 7 33 33 H 1.09006 * 109.32757 * 48.99610 * 11 10 9 34 34 H 1.09003 * 109.32927 * 168.64205 * 11 10 9 35 35 H 1.09001 * 108.51147 * 184.05498 * 12 11 10 36 36 H 1.09003 * 108.51264 * 301.54863 * 12 11 10 37 37 H 0.97007 * 119.99816 * 24.99631 * 15 13 12 38 38 H 1.08000 * 119.73120 * 359.97438 * 19 18 16 39 39 H 1.08004 * 119.38166 * 180.28113 * 20 19 18 40 40 H 1.07999 * 119.89679 * 179.65877 * 21 20 19 41 41 H 1.08001 * 119.14598 * 180.02562 * 24 23 22 42 42 H 1.07999 * 120.06824 * 180.02562 * 25 24 23 43 43 H 1.08004 * 120.91741 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.36662 * 212.07430 * 28 13 12 45 45 H 1.09000 * 109.37096 * 331.69706 * 28 13 12 46 46 H 1.08999 * 108.94366 * 258.57391 * 29 9 7 47 47 H 1.09000 * 108.94340 * 17.20532 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0884 -1.2032 -0.0629 9 7 1.3277 -2.3868 0.0759 10 6 1.9230 -3.4846 0.8045 11 6 2.8065 -4.3239 -0.1511 12 6 1.9658 -5.0803 -1.0918 13 6 1.1243 -4.2111 -2.0215 14 1 1.6799 -3.3090 -2.2777 15 7 0.8154 -4.9585 -3.2429 16 6 0.5446 -4.2986 -4.3864 17 8 0.5562 -3.0829 -4.4042 18 6 0.2340 -5.0514 -5.6169 19 6 0.0903 -6.4304 -5.5782 20 6 -0.2089 -7.1417 -6.7340 21 6 -0.3563 -6.5120 -7.9327 22 6 -0.2133 -5.1150 -8.0208 23 7 -0.3543 -4.4817 -9.1897 24 6 -0.2223 -3.1809 -9.2806 25 6 0.0713 -2.3950 -8.1681 26 6 0.2280 -2.9808 -6.9432 27 6 0.0856 -4.3752 -6.8519 28 6 -0.1594 -3.8315 -1.3253 29 6 0.0118 -2.4885 -0.5851 30 1 -0.4851 0.8400 -0.0004 31 1 2.5368 -3.0917 1.6150 32 1 1.1358 -4.1147 1.2184 33 1 3.4656 -3.6595 -0.7100 34 1 3.4077 -5.0212 0.4324 35 1 2.6112 -5.7137 -1.7004 36 1 1.2970 -5.7226 -0.5189 37 1 0.8058 -5.9284 -3.2287 38 1 0.2071 -6.9551 -4.6415 39 1 -0.3211 -8.2146 -6.6817 40 1 -0.5834 -7.0868 -8.8184 41 1 -0.3441 -2.7058 -10.2428 42 1 0.1739 -1.3251 -8.2732 43 1 0.4561 -2.3880 -6.0697 44 1 -0.9567 -3.7387 -2.0627 45 1 -0.4233 -4.6066 -0.6058 46 1 -0.7707 -2.3930 0.1677 47 1 -0.0878 -1.6737 -1.3023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052607947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:44 Heat of formation + Delta-G solvation = 50.107049 kcal Electronic energy + Delta-G solvation = -29479.463224 eV Core-core repulsion = 25627.868258 eV Total energy + Delta-G solvation = -3851.594967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16976 -39.58980 -37.72595 -37.00994 -34.78871 -33.38684 -32.95059 -31.25052 -30.71850 -30.66284 -29.66235 -26.08032 -24.89618 -24.15853 -23.57211 -23.34417 -22.74232 -20.59287 -20.05497 -19.22507 -18.34190 -17.64385 -16.94677 -16.57354 -16.17956 -15.89655 -15.19355 -14.95013 -14.82547 -14.65955 -14.25839 -14.04042 -13.92994 -13.59064 -13.31103 -13.16058 -13.01175 -12.67011 -12.42659 -12.28941 -11.96366 -11.84470 -11.60190 -11.52878 -11.08362 -10.84081 -10.79787 -10.57995 -10.41223 -10.20522 -10.11829 -10.03451 -9.93791 -9.61808 -9.60604 -9.18189 -8.99245 -8.83445 -8.42085 -8.30976 -6.48858 -5.72930 -3.26347 -0.00386 0.64168 1.66080 2.52757 3.23639 3.26137 3.41589 3.47853 3.48872 4.01302 4.08396 4.47402 4.49473 4.53901 4.64977 4.74279 4.92741 4.95380 5.14228 5.16786 5.28221 5.30784 5.50169 5.57463 5.58748 5.67881 5.73300 5.78324 5.99207 6.01267 6.02383 6.12783 6.20569 6.22876 6.31673 6.39958 6.47490 6.50698 6.59482 6.62444 6.72395 6.80648 6.87531 7.00828 7.07210 7.53565 7.67580 7.73121 7.85184 7.92746 8.38542 8.60186 9.33068 9.95749 10.43727 11.33171 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013264 B = 0.003283 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.454252 B = 8527.045692 C =10108.739050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.014 3.986 3 Si 0.900 3.100 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.262 4.262 8 H 0.062 0.938 9 N -0.593 5.593 10 C 0.157 3.843 11 C -0.146 4.146 12 C -0.106 4.106 13 C 0.154 3.846 14 H 0.105 0.895 15 N -0.718 5.718 16 C 0.553 3.447 17 O -0.518 6.518 18 C -0.102 4.102 19 C -0.082 4.082 20 C -0.111 4.111 21 C -0.072 4.072 22 C 0.118 3.882 23 N -0.483 5.483 24 C 0.133 3.867 25 C -0.181 4.181 26 C -0.056 4.056 27 C -0.068 4.068 28 C -0.149 4.149 29 C 0.183 3.817 30 H 0.253 0.747 31 H 0.046 0.954 32 H 0.031 0.969 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.391 0.609 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.159 0.841 42 H 0.139 0.861 43 H 0.182 0.818 44 H 0.054 0.946 45 H 0.044 0.956 46 H 0.024 0.976 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.372 -15.101 -13.217 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.185 4.185 3 Si 0.730 3.270 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.392 4.392 8 H 0.079 0.921 9 N -0.314 5.314 10 C 0.028 3.972 11 C -0.186 4.186 12 C -0.144 4.144 13 C 0.051 3.949 14 H 0.123 0.877 15 N -0.368 5.368 16 C 0.339 3.661 17 O -0.396 6.396 18 C -0.106 4.106 19 C -0.101 4.101 20 C -0.131 4.131 21 C -0.091 4.091 22 C -0.003 4.003 23 N -0.191 5.191 24 C -0.039 4.039 25 C -0.201 4.201 26 C -0.081 4.081 27 C -0.071 4.071 28 C -0.189 4.189 29 C 0.058 3.942 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.225 0.775 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.176 0.824 42 H 0.157 0.843 43 H 0.199 0.801 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.042 0.958 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.699 -14.676 -13.872 20.206 hybrid contribution 0.532 0.805 0.619 1.147 sum -0.167 -13.871 -13.252 19.184 Atomic orbital electron populations 1.69984 1.05314 1.25360 1.54002 1.25289 0.95446 0.98257 0.99488 0.86337 0.79158 0.83847 0.77690 1.21388 1.21626 1.20442 1.19121 0.90675 0.83513 1.45907 0.92055 1.43651 1.19604 1.09719 1.58450 1.20713 0.94387 0.89661 0.92390 1.21452 0.99050 0.99166 0.98980 1.20576 0.98391 0.98051 0.97424 1.20592 0.96882 0.95426 0.81964 0.87730 1.46282 1.70603 1.09892 1.10020 1.18065 0.77592 0.87429 0.82975 1.90644 1.51367 1.13214 1.84367 1.20060 1.03397 0.93806 0.93310 1.21419 0.96891 0.92769 0.99024 1.20799 0.99753 1.00574 0.91946 1.20957 0.97597 0.91975 0.98538 1.18853 0.98683 0.94255 0.88501 1.68043 1.14744 1.10902 1.25393 1.23008 0.92639 0.89321 0.98927 1.22090 1.02350 1.02034 0.93634 1.22778 0.91123 0.94010 1.00184 1.18665 1.00730 0.94738 0.92975 1.22556 0.96019 1.01425 0.98932 1.21134 0.86162 0.91908 0.95044 0.93632 0.93570 0.95027 0.91981 0.93019 0.93463 0.92760 0.77466 0.85018 0.84649 0.84476 0.82421 0.84290 0.80142 0.92715 0.93720 0.95818 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.28 10.57 55.49 0.59 -25.69 16 2 C 0.01 0.40 5.26 -17.43 -0.09 0.31 16 3 Si 0.90 21.98 29.56 -169.99 -5.02 16.96 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.26 -7.14 9.37 -15.06 -0.14 -7.28 16 8 H 0.06 1.65 7.83 -52.48 -0.41 1.24 16 9 N -0.59 -14.48 2.26 -171.87 -0.39 -14.87 16 10 C 0.16 3.16 5.65 -4.08 -0.02 3.14 16 11 C -0.15 -2.45 5.74 -28.58 -0.16 -2.61 16 12 C -0.11 -1.59 4.69 -29.78 -0.14 -1.73 16 13 C 0.15 2.68 2.06 -69.22 -0.14 2.53 16 14 H 0.10 2.30 6.92 -51.93 -0.36 1.94 16 15 N -0.72 -10.16 4.88 -56.10 -0.27 -10.43 16 16 C 0.55 8.85 7.54 -12.46 -0.09 8.76 16 17 O -0.52 -10.35 13.08 5.29 0.07 -10.28 16 18 C -0.10 -1.37 5.90 -104.65 -0.62 -1.98 16 19 C -0.08 -0.80 9.51 -39.14 -0.37 -1.18 16 20 C -0.11 -0.94 9.92 -40.04 -0.40 -1.34 16 21 C -0.07 -0.74 9.96 -39.38 -0.39 -1.13 16 22 C 0.12 1.55 6.60 -84.88 -0.56 0.99 16 23 N -0.48 -6.25 10.34 -10.99 -0.11 -6.36 16 24 C 0.13 1.47 11.15 -17.47 -0.19 1.28 16 25 C -0.18 -2.13 10.03 -39.74 -0.40 -2.53 16 26 C -0.06 -0.81 9.29 -39.31 -0.37 -1.18 16 27 C -0.07 -0.98 5.76 -106.53 -0.61 -1.59 16 28 C -0.15 -2.85 5.39 -27.11 -0.15 -3.00 16 29 C 0.18 4.42 4.66 -2.75 -0.01 4.41 16 30 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.05 0.95 7.99 -51.93 -0.41 0.53 16 32 H 0.03 0.60 8.06 -51.93 -0.42 0.18 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.61 8.04 -51.93 -0.42 0.19 16 36 H 0.05 0.74 7.36 -51.93 -0.38 0.36 16 37 H 0.39 4.08 6.68 -40.82 -0.27 3.81 16 38 H 0.13 0.92 6.43 -52.49 -0.34 0.58 16 39 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 40 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 42 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 43 H 0.18 3.00 4.97 -52.50 -0.26 2.74 16 44 H 0.05 1.06 7.85 -51.93 -0.41 0.65 16 45 H 0.04 0.78 7.32 -51.93 -0.38 0.40 16 46 H 0.02 0.62 8.00 -51.93 -0.42 0.20 16 47 H 0.09 2.40 6.35 -51.93 -0.33 2.07 16 LS Contribution 371.14 15.07 5.59 5.59 Total: -1.00 -32.54 371.14 -10.90 -43.44 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.48 Total: 5.78 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -4.87 Total: -4.13 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: -0.19 Total: -57.35 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.07 Total: -10.28 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.54 -10.90 -43.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052607947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.549 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds