Wall clock time and date at job start Tue Mar 31 2020 22:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99744 * 2 1 4 4 H 1.48490 * 109.47173 * 269.99713 * 3 2 1 5 5 H 1.48502 * 109.47004 * 30.00138 * 3 2 1 6 6 H 1.48508 * 109.47099 * 149.99849 * 3 2 1 7 7 C 1.38806 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00307 * 176.10805 * 7 2 1 9 9 N 1.36935 * 120.00077 * 356.38253 * 7 2 1 10 10 C 1.44581 * 118.64777 * 214.82295 * 9 7 2 11 11 C 1.54862 * 109.59977 * 270.70615 * 10 9 7 12 12 C 1.47092 * 110.32441 * 288.73099 * 11 10 9 13 13 C 1.52574 * 114.32637 * 62.80390 * 12 11 10 14 14 H 1.08998 * 109.48821 * 34.97468 * 13 12 11 15 15 N 1.46494 * 109.49149 * 155.02348 * 13 12 11 16 16 C 1.34778 * 119.99967 * 205.00186 * 15 13 12 17 17 O 1.21583 * 120.00022 * 359.97438 * 16 15 13 18 18 C 1.47552 * 119.99990 * 179.97438 * 16 15 13 19 19 C 1.38703 * 120.38735 * 6.29192 * 18 16 15 20 20 C 1.38966 * 120.53275 * 179.67460 * 19 18 16 21 21 C 1.36211 * 121.23793 * 0.62679 * 20 19 18 22 22 C 1.40704 * 120.20457 * 359.67918 * 21 20 19 23 23 N 1.33690 * 120.95164 * 179.97438 * 22 21 20 24 24 C 1.31067 * 121.34451 * 180.02562 * 23 22 21 25 25 C 1.39338 * 121.70787 * 0.02562 * 24 23 22 26 26 C 1.36674 * 119.86718 * 359.97438 * 25 24 23 27 27 C 1.40465 * 118.17088 * 0.03969 * 26 25 24 28 28 C 1.50881 * 109.35629 * 274.98800 * 13 12 11 29 29 C 1.47612 * 118.64093 * 34.55798 * 9 7 2 30 30 H 0.97001 * 120.00617 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.44392 * 30.74373 * 10 9 7 32 32 H 1.08998 * 109.44993 * 150.66912 * 10 9 7 33 33 H 1.09006 * 109.32757 * 48.99610 * 11 10 9 34 34 H 1.09003 * 109.32927 * 168.64205 * 11 10 9 35 35 H 1.09001 * 108.51147 * 184.05498 * 12 11 10 36 36 H 1.09003 * 108.51264 * 301.54863 * 12 11 10 37 37 H 0.97007 * 119.99816 * 24.99631 * 15 13 12 38 38 H 1.08000 * 119.73120 * 359.97438 * 19 18 16 39 39 H 1.08004 * 119.38166 * 180.28113 * 20 19 18 40 40 H 1.07999 * 119.89679 * 179.65877 * 21 20 19 41 41 H 1.08001 * 119.14598 * 180.02562 * 24 23 22 42 42 H 1.07999 * 120.06824 * 180.02562 * 25 24 23 43 43 H 1.08004 * 120.91741 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.36662 * 212.07430 * 28 13 12 45 45 H 1.09000 * 109.37096 * 331.69706 * 28 13 12 46 46 H 1.08999 * 108.94366 * 258.57391 * 29 9 7 47 47 H 1.09000 * 108.94340 * 17.20532 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0884 -1.2032 -0.0629 9 7 1.3277 -2.3868 0.0759 10 6 1.9230 -3.4846 0.8045 11 6 2.8065 -4.3239 -0.1511 12 6 1.9658 -5.0803 -1.0918 13 6 1.1243 -4.2111 -2.0215 14 1 1.6799 -3.3090 -2.2777 15 7 0.8154 -4.9585 -3.2429 16 6 0.5446 -4.2986 -4.3864 17 8 0.5562 -3.0829 -4.4042 18 6 0.2340 -5.0514 -5.6169 19 6 0.0903 -6.4304 -5.5782 20 6 -0.2089 -7.1417 -6.7340 21 6 -0.3563 -6.5120 -7.9327 22 6 -0.2133 -5.1150 -8.0208 23 7 -0.3543 -4.4817 -9.1897 24 6 -0.2223 -3.1809 -9.2806 25 6 0.0713 -2.3950 -8.1681 26 6 0.2280 -2.9808 -6.9432 27 6 0.0856 -4.3752 -6.8519 28 6 -0.1594 -3.8315 -1.3253 29 6 0.0118 -2.4885 -0.5851 30 1 -0.4851 0.8400 -0.0004 31 1 2.5368 -3.0917 1.6150 32 1 1.1358 -4.1147 1.2184 33 1 3.4656 -3.6595 -0.7100 34 1 3.4077 -5.0212 0.4324 35 1 2.6112 -5.7137 -1.7004 36 1 1.2970 -5.7226 -0.5189 37 1 0.8058 -5.9284 -3.2287 38 1 0.2071 -6.9551 -4.6415 39 1 -0.3211 -8.2146 -6.6817 40 1 -0.5834 -7.0868 -8.8184 41 1 -0.3441 -2.7058 -10.2428 42 1 0.1739 -1.3251 -8.2732 43 1 0.4561 -2.3880 -6.0697 44 1 -0.9567 -3.7387 -2.0627 45 1 -0.4233 -4.6066 -0.6058 46 1 -0.7707 -2.3930 0.1677 47 1 -0.0878 -1.6737 -1.3023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052607947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:43 Heat of formation + Delta-G solvation = 29.691687 kcal Electronic energy + Delta-G solvation = -29480.348501 eV Core-core repulsion = 25627.868258 eV Total energy + Delta-G solvation = -3852.480243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.13570 -40.81750 -39.19671 -37.92340 -36.39753 -34.56280 -34.34488 -32.74667 -32.44519 -31.56338 -30.81216 -27.84302 -26.08117 -25.41644 -25.10502 -24.44842 -23.96019 -21.88005 -21.32985 -20.99786 -19.27669 -18.61447 -18.51054 -17.88726 -17.35654 -17.12730 -16.80480 -16.26304 -16.00478 -15.82338 -15.64291 -15.37209 -15.16777 -14.87284 -14.74689 -14.45398 -14.14755 -14.00205 -13.82903 -13.52403 -13.32854 -13.05920 -13.04041 -12.76030 -12.72159 -12.50603 -12.34625 -12.11722 -11.99977 -11.73726 -11.55679 -11.49723 -11.37729 -11.32598 -11.20384 -10.47222 -10.30303 -10.13576 -9.83900 -9.32933 -8.50194 -7.85455 -5.40860 -0.90597 -0.21752 0.65644 1.42194 1.43487 1.52188 1.65914 2.06132 2.18287 2.49271 3.08703 3.29258 3.30020 3.51879 3.71713 3.73365 3.79231 3.82062 3.87496 4.03585 4.09608 4.15348 4.37138 4.41901 4.44584 4.48371 4.50106 4.72042 4.75244 4.78563 4.85038 4.95745 5.01634 5.03590 5.11245 5.20132 5.23439 5.24581 5.25881 5.32469 5.37976 5.50616 5.59236 5.60833 5.64694 5.72218 5.78243 5.85908 6.47036 6.54273 6.81549 7.22178 7.24867 7.97553 8.37777 9.17882 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013264 B = 0.003283 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.454252 B = 8527.045692 C =10108.739050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.044 4.044 3 Si 0.961 3.039 4 H -0.292 1.292 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.266 4.266 8 H 0.061 0.939 9 N -0.606 5.606 10 C 0.148 3.852 11 C -0.133 4.133 12 C -0.103 4.103 13 C 0.165 3.835 14 H 0.050 0.950 15 N -0.700 5.700 16 C 0.548 3.452 17 O -0.572 6.572 18 C -0.137 4.137 19 C -0.056 4.056 20 C -0.100 4.100 21 C -0.070 4.070 22 C 0.095 3.905 23 N -0.492 5.492 24 C 0.130 3.870 25 C -0.175 4.175 26 C -0.093 4.093 27 C -0.087 4.087 28 C -0.133 4.133 29 C 0.196 3.804 30 H 0.247 0.753 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.034 0.966 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.414 0.586 38 H 0.168 0.832 39 H 0.184 0.816 40 H 0.161 0.839 41 H 0.196 0.804 42 H 0.158 0.842 43 H 0.150 0.850 44 H 0.044 0.956 45 H 0.074 0.926 46 H -0.006 1.006 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.336 -19.558 -14.067 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.240 4.240 3 Si 0.789 3.211 4 H -0.219 1.219 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.396 4.396 8 H 0.078 0.922 9 N -0.329 5.329 10 C 0.022 3.978 11 C -0.173 4.173 12 C -0.141 4.141 13 C 0.060 3.940 14 H 0.068 0.932 15 N -0.352 5.352 16 C 0.337 3.663 17 O -0.454 6.454 18 C -0.141 4.141 19 C -0.074 4.074 20 C -0.119 4.119 21 C -0.089 4.089 22 C -0.026 4.026 23 N -0.200 5.200 24 C -0.042 4.042 25 C -0.195 4.195 26 C -0.119 4.119 27 C -0.090 4.090 28 C -0.173 4.173 29 C 0.071 3.929 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.253 0.747 38 H 0.185 0.815 39 H 0.201 0.799 40 H 0.178 0.822 41 H 0.212 0.788 42 H 0.175 0.825 43 H 0.167 0.833 44 H 0.063 0.937 45 H 0.093 0.907 46 H 0.012 0.988 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.040 -19.212 -14.708 24.196 hybrid contribution 0.310 2.119 0.835 2.299 sum 0.349 -17.093 -13.872 22.017 Atomic orbital electron populations 1.70188 1.06618 1.25375 1.55737 1.26016 0.96233 1.01462 1.00251 0.85379 0.78446 0.80043 0.77262 1.21880 1.21724 1.18922 1.19415 0.90869 0.84897 1.44463 0.92180 1.43812 1.19341 1.10303 1.59427 1.20960 0.95112 0.88944 0.92787 1.21298 0.98497 0.98965 0.98582 1.20528 0.98770 0.97655 0.97137 1.20198 0.95527 0.94831 0.83413 0.93174 1.45948 1.69982 1.10811 1.08465 1.18613 0.76509 0.87032 0.84162 1.90650 1.53626 1.15813 1.85279 1.19881 1.07238 0.95321 0.91649 1.21889 0.93337 0.91021 1.01174 1.21302 0.97545 1.02647 0.90379 1.21364 0.96456 0.90704 1.00360 1.19266 0.99542 0.95719 0.88045 1.68105 1.14897 1.11642 1.25402 1.23545 0.91796 0.88941 0.99947 1.22342 1.00984 1.03155 0.93016 1.22625 0.94020 0.94912 1.00337 1.18858 1.01346 0.94631 0.94150 1.22326 0.96983 0.99086 0.98905 1.20720 0.85605 0.93285 0.93326 0.94406 0.94373 0.93305 0.94669 0.89121 0.90145 0.89890 0.74701 0.81500 0.79921 0.82191 0.78758 0.82480 0.83295 0.93694 0.90695 0.98809 0.94809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.81 10.57 21.65 0.23 -57.58 16 2 C -0.04 -2.59 5.26 84.86 0.45 -2.14 16 3 Si 0.96 47.20 29.56 68.60 2.03 49.23 16 4 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.27 -15.10 9.37 84.03 0.79 -14.32 16 8 H 0.06 3.36 7.83 -2.91 -0.02 3.34 16 9 N -0.61 -30.69 2.26 -697.66 -1.58 -32.27 16 10 C 0.15 5.87 5.65 87.37 0.49 6.36 16 11 C -0.13 -4.15 5.74 29.39 0.17 -3.99 16 12 C -0.10 -2.73 4.69 28.62 0.13 -2.59 16 13 C 0.16 5.67 2.06 44.16 0.09 5.76 16 14 H 0.05 2.32 6.92 -2.39 -0.02 2.31 16 15 N -0.70 -19.00 4.88 -449.68 -2.19 -21.19 16 16 C 0.55 18.18 7.54 86.70 0.65 18.84 16 17 O -0.57 -25.20 13.08 -3.98 -0.05 -25.25 16 18 C -0.14 -3.63 5.90 -19.88 -0.12 -3.75 16 19 C -0.06 -0.89 9.51 22.56 0.21 -0.67 16 20 C -0.10 -1.22 9.92 21.97 0.22 -1.00 16 21 C -0.07 -1.21 9.96 22.40 0.22 -0.99 16 22 C 0.10 2.41 6.60 40.27 0.27 2.68 16 23 N -0.49 -12.26 10.34 -188.68 -1.95 -14.21 16 24 C 0.13 2.80 11.15 85.07 0.95 3.75 16 25 C -0.18 -4.34 10.03 22.17 0.22 -4.12 16 26 C -0.09 -2.98 9.29 22.45 0.21 -2.77 16 27 C -0.09 -2.57 5.76 -21.10 -0.12 -2.69 16 28 C -0.13 -5.14 5.39 30.35 0.16 -4.98 16 29 C 0.20 10.06 4.66 86.61 0.40 10.47 16 30 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 31 H 0.04 1.55 7.99 -2.39 -0.02 1.53 16 32 H 0.05 1.76 8.06 -2.39 -0.02 1.74 16 33 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.08 1.67 8.04 -2.39 -0.02 1.65 16 36 H 0.08 1.81 7.36 -2.39 -0.02 1.80 16 37 H 0.41 7.08 6.68 -92.70 -0.62 6.46 16 38 H 0.17 1.38 6.43 -2.91 -0.02 1.36 16 39 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 40 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 41 H 0.20 2.53 8.06 -2.91 -0.02 2.51 16 42 H 0.16 3.08 8.06 -2.91 -0.02 3.05 16 43 H 0.15 5.72 4.97 -3.12 -0.02 5.70 16 44 H 0.04 1.80 7.85 -2.39 -0.02 1.78 16 45 H 0.07 2.45 7.32 -2.39 -0.02 2.43 16 46 H -0.01 -0.34 8.00 -2.39 -0.02 -0.36 16 47 H 0.03 2.06 6.35 -2.39 -0.02 2.04 16 Total: -1.00 -81.03 371.14 2.26 -78.76 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.38 Total: 18.67 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: 5.41 Total: 3.85 kcal Atomic # 7 Polarization: -119.76 SS G_CDS: -5.50 Total: -125.25 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.05 Total: -25.25 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -81.03 2.26 -78.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052607947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.453 kcal (2) G-P(sol) polarization free energy of solvation -81.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds