Wall clock time and date at job start Tue Mar 31 2020 22:18:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86801 * 119.99818 * 2 1
4 4 H 1.48498 * 109.46655 * 269.99401 * 3 2 1
5 5 H 1.48493 * 109.47402 * 29.99524 * 3 2 1
6 6 H 1.48497 * 109.46980 * 149.99836 * 3 2 1
7 7 C 1.38816 * 120.00010 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00027 * 195.71420 * 7 2 1
9 9 N 1.36936 * 120.00147 * 15.71271 * 7 2 1
10 10 C 1.44576 * 118.64501 * 206.54702 * 9 7 2
11 11 C 1.54867 * 109.57815 * 270.71540 * 10 9 7
12 12 C 1.47100 * 110.31821 * 288.74676 * 11 10 9
13 13 C 1.52565 * 114.32807 * 62.80096 * 12 11 10
14 14 H 1.09001 * 109.48518 * 34.95398 * 13 12 11
15 15 N 1.46501 * 109.48866 * 154.99646 * 13 12 11
16 16 C 1.34774 * 120.00066 * 205.00160 * 15 13 12
17 17 O 1.21566 * 119.99996 * 0.02562 * 16 15 13
18 18 C 1.47777 * 120.00420 * 180.02562 * 16 15 13
19 19 C 1.40651 * 119.69405 * 359.72384 * 18 16 15
20 20 C 1.35850 * 120.87544 * 179.74988 * 19 18 16
21 21 C 1.40396 * 119.84104 * 0.52403 * 20 19 18
22 22 C 1.40639 * 121.96822 * 179.69689 * 21 20 19
23 23 C 1.36219 * 118.72963 * 180.02562 * 22 21 20
24 24 N 1.32603 * 121.89927 * 0.04124 * 23 22 21
25 25 C 1.31239 * 122.74168 * 359.97438 * 24 23 22
26 26 C 1.40554 * 119.88882 * 0.02562 * 25 24 23
27 27 C 1.38557 * 119.70121 * 179.97438 * 18 16 15
28 28 C 1.50874 * 109.36215 * 274.98816 * 13 12 11
29 29 C 1.47583 * 118.62322 * 26.50043 * 9 7 2
30 30 H 0.97000 * 120.00099 * 0.02562 * 1 2 3
31 31 H 1.09000 * 109.44592 * 150.69057 * 10 9 7
32 32 H 1.09000 * 109.45128 * 30.74179 * 10 9 7
33 33 H 1.09002 * 109.32751 * 49.00297 * 11 10 9
34 34 H 1.08994 * 109.33056 * 168.65895 * 11 10 9
35 35 H 1.09009 * 108.50594 * 184.05514 * 12 11 10
36 36 H 1.08997 * 108.50984 * 301.70034 * 12 11 10
37 37 H 0.96995 * 119.99833 * 24.99968 * 15 13 12
38 38 H 1.08001 * 119.56450 * 359.97438 * 19 18 16
39 39 H 1.08000 * 120.07845 * 180.28388 * 20 19 18
40 40 H 1.07995 * 120.63370 * 0.02562 * 22 21 20
41 41 H 1.08001 * 119.05177 * 180.02562 * 23 22 21
42 42 H 1.08000 * 120.05494 * 179.97438 * 25 24 23
43 43 H 1.08005 * 120.34734 * 359.95562 * 27 18 16
44 44 H 1.08997 * 109.36918 * 212.08212 * 28 13 12
45 45 H 1.09005 * 109.36602 * 331.81983 * 28 13 12
46 46 H 1.09004 * 108.94507 * 17.20076 * 29 9 7
47 47 H 1.08999 * 108.89440 * 258.51064 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4977 2.0463 -1.4001
5 1 1.4476 2.6527 0.6999
6 1 3.5477 1.4402 0.7001
7 6 2.0103 -1.2022 0.0005
8 1 3.0600 -1.2195 0.2539
9 7 1.3640 -2.3661 -0.3201
10 6 1.8685 -3.6097 0.2175
11 6 2.9232 -4.2030 -0.7490
12 6 2.2724 -4.7073 -1.9680
13 6 1.5652 -3.6358 -2.7923
14 1 2.1248 -2.7023 -2.7319
15 7 1.4848 -4.0679 -4.1898
16 6 1.3822 -3.1523 -5.1734
17 8 1.3569 -1.9678 -4.9011
18 6 1.3005 -3.5882 -6.5831
19 6 1.3363 -4.9600 -6.8914
20 6 1.2578 -5.3875 -8.1785
21 6 1.1505 -4.4522 -9.2200
22 6 1.0727 -4.8447 -10.5683
23 6 0.9706 -3.8814 -11.5259
24 7 0.9436 -2.5910 -11.2216
25 6 1.0121 -2.1513 -9.9870
26 6 1.1197 -3.0638 -8.9234
27 6 1.1947 -2.6415 -7.5893
28 6 0.1736 -3.4244 -2.2493
29 6 0.1806 -2.2986 -1.1994
30 1 -0.4850 0.8400 -0.0004
31 1 1.0457 -4.3150 0.3341
32 1 2.3289 -3.4254 1.1882
33 1 3.6421 -3.4289 -1.0177
34 1 3.4440 -5.0233 -0.2553
35 1 3.0290 -5.1817 -2.5932
36 1 1.5389 -5.4611 -1.6821
37 1 1.5054 -5.0130 -4.4071
38 1 1.4236 -5.6833 -6.0941
39 1 1.2819 -6.4442 -8.4003
40 1 1.0936 -5.8900 -10.8392
41 1 0.9101 -4.1770 -12.5629
42 1 0.9868 -1.0899 -9.7886
43 1 1.1710 -1.5890 -7.3481
44 1 -0.4957 -3.1531 -3.0657
45 1 -0.1774 -4.3463 -1.7856
46 1 0.1750 -1.3366 -1.7119
47 1 -0.7183 -2.3789 -0.5882
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001052843085.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:18:02
Heat of formation + Delta-G solvation = 42.149926 kcal
Electronic energy + Delta-G solvation = -28925.564980 eV
Core-core repulsion = 25073.624966 eV
Total energy + Delta-G solvation = -3851.940013 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.18410 -39.79729 -37.92618 -36.99467 -34.74156 -33.28967 -32.96361 -31.81677
-30.83111 -30.33542 -29.86230 -26.17494 -25.08579 -24.24245 -23.70422 -23.22547
-22.50256 -20.88698 -20.20546 -19.22506 -18.26512 -18.01260 -17.02825 -16.56024
-16.04568 -15.73589 -15.35168 -15.11369 -14.76988 -14.50233 -14.31830 -14.19054
-13.98962 -13.88395 -13.61203 -13.39220 -13.15542 -12.85578 -12.43802 -12.30904
-12.22914 -11.90795 -11.59710 -11.57201 -11.06525 -10.86252 -10.74754 -10.52852
-10.39368 -10.19862 -10.07453 -9.96205 -9.87777 -9.68372 -9.60071 -9.55892
-9.45639 -8.77198 -8.40748 -8.29712 -6.60408 -5.70219 -3.14292 -0.07214
0.39666 1.50561 2.36812 3.26902 3.32254 3.45737 3.52242 3.53194
3.81548 4.06331 4.17787 4.32880 4.43997 4.58205 4.61722 4.69033
4.82842 4.88120 5.14800 5.23842 5.29408 5.34969 5.43917 5.50661
5.55394 5.59318 5.65028 5.73998 5.96039 5.98476 6.00544 6.11152
6.20700 6.25884 6.29027 6.38978 6.45128 6.49954 6.59565 6.67889
6.77824 6.86452 7.00246 7.07200 7.49320 7.61688 7.70608 7.78738
7.91162 8.41030 8.55437 9.31695 9.98687 10.42827 11.37290
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.015685 B = 0.002708 C = 0.002414
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1784.749180 B =10338.318725 C =11595.704789
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.903 5.903
2 C 0.007 3.993
3 Si 0.899 3.101
4 H -0.286 1.286
5 H -0.292 1.292
6 H -0.280 1.280
7 C -0.259 4.259
8 H 0.065 0.935
9 N -0.591 5.591
10 C 0.156 3.844
11 C -0.146 4.146
12 C -0.106 4.106
13 C 0.153 3.847
14 H 0.105 0.895
15 N -0.721 5.721
16 C 0.548 3.452
17 O -0.519 6.519
18 C -0.130 4.130
19 C -0.070 4.070
20 C -0.120 4.120
21 C -0.010 4.010
22 C -0.161 4.161
23 C 0.082 3.918
24 N -0.493 5.493
25 C 0.160 3.840
26 C -0.123 4.123
27 C -0.018 4.018
28 C -0.147 4.147
29 C 0.182 3.818
30 H 0.253 0.747
31 H 0.032 0.968
32 H 0.046 0.954
33 H 0.062 0.938
34 H 0.051 0.949
35 H 0.047 0.953
36 H 0.054 0.946
37 H 0.390 0.610
38 H 0.131 0.869
39 H 0.136 0.864
40 H 0.139 0.861
41 H 0.153 0.847
42 H 0.168 0.832
43 H 0.151 0.849
44 H 0.055 0.945
45 H 0.046 0.954
46 H 0.079 0.921
47 H 0.026 0.974
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.011 -14.934 -18.468 23.836
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.547 5.547
2 C -0.192 4.192
3 Si 0.729 3.271
4 H -0.213 1.213
5 H -0.219 1.219
6 H -0.205 1.205
7 C -0.389 4.389
8 H 0.082 0.918
9 N -0.313 5.313
10 C 0.028 3.972
11 C -0.187 4.187
12 C -0.144 4.144
13 C 0.051 3.949
14 H 0.123 0.877
15 N -0.372 5.372
16 C 0.334 3.666
17 O -0.395 6.395
18 C -0.133 4.133
19 C -0.089 4.089
20 C -0.138 4.138
21 C -0.015 4.015
22 C -0.181 4.181
23 C -0.061 4.061
24 N -0.201 5.201
25 C -0.012 4.012
26 C -0.125 4.125
27 C -0.038 4.038
28 C -0.187 4.187
29 C 0.057 3.943
30 H 0.063 0.937
31 H 0.050 0.950
32 H 0.064 0.936
33 H 0.081 0.919
34 H 0.070 0.930
35 H 0.066 0.934
36 H 0.072 0.928
37 H 0.224 0.776
38 H 0.149 0.851
39 H 0.154 0.846
40 H 0.157 0.843
41 H 0.171 0.829
42 H 0.185 0.815
43 H 0.168 0.832
44 H 0.074 0.926
45 H 0.064 0.936
46 H 0.097 0.903
47 H 0.044 0.956
Dipole moment (debyes) X Y Z Total
from point charges 1.780 -13.460 -19.014 23.363
hybrid contribution 0.468 -0.401 0.498 0.792
sum 2.248 -13.861 -18.515 23.238
Atomic orbital electron populations
1.70053 1.05239 1.25393 1.54043 1.25012 0.95244 0.98343 1.00557
0.86340 0.79054 0.83898 0.77778 1.21310 1.21854 1.20529 1.19173
0.92357 0.85011 1.42368 0.91754 1.43672 1.32483 1.01935 1.53160
1.20694 0.93876 0.88408 0.94207 1.21456 1.00392 0.99958 0.96852
1.20577 0.99119 0.97449 0.97284 1.20583 0.97845 0.99411 0.77102
0.87743 1.46256 1.74512 1.09016 1.07454 1.18154 0.77455 0.86285
0.84692 1.90878 1.48620 1.16353 1.83695 1.20130 1.05240 0.93778
0.94160 1.21064 0.96135 0.94634 0.97105 1.20837 1.01842 0.99337
0.91791 1.18289 0.96272 0.92764 0.94218 1.21916 1.02581 1.01336
0.92274 1.22261 0.95799 0.87945 1.00087 1.67497 1.12794 1.17719
1.22088 1.23373 0.91128 0.99947 0.86713 1.19030 1.04377 0.93957
0.95127 1.21518 0.91578 1.00843 0.89907 1.22450 0.95355 1.00942
0.99948 1.20949 0.88568 0.95665 0.89137 0.93721 0.94998 0.93557
0.91882 0.93006 0.93428 0.92779 0.77583 0.85138 0.84621 0.84330
0.82929 0.81467 0.83171 0.92589 0.93559 0.90314 0.95632
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.71 11.01 55.49 0.61 -26.10 16
2 C 0.01 0.20 4.87 -17.43 -0.08 0.12 16
3 Si 0.90 22.46 29.58 -169.99 -5.03 17.44 16
4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16
5 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16
6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
7 C -0.26 -7.13 9.44 -15.06 -0.14 -7.27 16
8 H 0.06 1.75 7.88 -52.49 -0.41 1.33 16
9 N -0.59 -14.55 2.27 -172.11 -0.39 -14.94 16
10 C 0.16 3.16 5.66 -4.08 -0.02 3.14 16
11 C -0.15 -2.45 5.74 -28.58 -0.16 -2.61 16
12 C -0.11 -1.59 4.70 -29.79 -0.14 -1.73 16
13 C 0.15 2.68 2.06 -69.22 -0.14 2.54 16
14 H 0.10 2.32 6.92 -51.93 -0.36 1.96 16
15 N -0.72 -10.19 4.88 -56.03 -0.27 -10.46 16
16 C 0.55 8.69 7.59 -12.36 -0.09 8.59 16
17 O -0.52 -10.75 15.96 5.31 0.08 -10.67 16
18 C -0.13 -1.59 5.87 -104.97 -0.62 -2.21 16
19 C -0.07 -0.64 9.44 -39.53 -0.37 -1.01 16
20 C -0.12 -0.98 9.77 -39.63 -0.39 -1.37 16
21 C -0.01 -0.10 5.75 -106.74 -0.61 -0.71 16
22 C -0.16 -1.26 9.87 -39.40 -0.39 -1.65 16
23 C 0.08 0.70 11.07 -17.95 -0.20 0.50 16
24 N -0.49 -5.20 10.30 -13.11 -0.14 -5.34 16
25 C 0.16 1.59 11.05 -16.93 -0.19 1.40 16
26 C -0.12 -1.30 5.74 -106.87 -0.61 -1.92 16
27 C -0.02 -0.21 9.37 -38.75 -0.36 -0.57 16
28 C -0.15 -2.82 5.39 -27.31 -0.15 -2.96 16
29 C 0.18 4.43 4.67 -2.96 -0.01 4.42 16
30 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16
31 H 0.03 0.61 8.06 -51.93 -0.42 0.19 16
32 H 0.05 0.95 7.99 -51.93 -0.41 0.54 16
33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16
34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
35 H 0.05 0.61 8.04 -51.92 -0.42 0.19 16
36 H 0.05 0.74 7.35 -51.93 -0.38 0.36 16
37 H 0.39 4.02 6.58 -40.82 -0.27 3.76 16
38 H 0.13 0.86 6.34 -52.49 -0.33 0.53 16
39 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16
40 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16
41 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16
42 H 0.17 1.27 8.06 -52.49 -0.42 0.84 16
43 H 0.15 1.78 7.61 -52.48 -0.40 1.38 16
44 H 0.06 1.09 7.85 -51.93 -0.41 0.68 16
45 H 0.05 0.80 7.31 -51.93 -0.38 0.42 16
46 H 0.08 2.22 6.33 -51.93 -0.33 1.89 16
47 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16
LS Contribution 376.46 15.07 5.67 5.67
Total: -1.00 -33.77 376.46 -10.76 -44.53
By element:
Atomic # 1 Polarization: 9.77 SS G_CDS: -6.61 Total: 3.16 kcal
Atomic # 6 Polarization: 1.40 SS G_CDS: -4.69 Total: -3.29 kcal
Atomic # 7 Polarization: -56.65 SS G_CDS: -0.19 Total: -56.84 kcal
Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal
Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.44 kcal
Total LS contribution 5.67 Total: 5.67 kcal
Total: -33.77 -10.76 -44.53 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001052843085.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.678 kcal
(2) G-P(sol) polarization free energy of solvation -33.766 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.912 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.762 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.528 kcal
(6) G-S(sol) free energy of system = (1) + (5) 42.150 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds