Wall clock time and date at job start Tue Mar 31 2020 23:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39035 * 121.01821 * 2 1 4 4 C 1.47761 * 120.27129 * 0.02562 * 3 2 1 5 5 O 1.21561 * 119.99963 * 313.69533 * 4 3 2 6 6 N 1.34777 * 119.99831 * 133.69162 * 4 3 2 7 7 C 1.47020 * 125.65332 * 354.85582 * 6 4 3 8 8 C 1.54320 * 107.27248 * 181.03874 * 7 6 4 9 9 H 1.09003 * 110.71981 * 263.82849 * 8 7 6 10 10 N 1.46498 * 110.71947 * 140.55500 * 8 7 6 11 11 C 1.36943 * 119.99720 * 86.45381 * 10 8 7 12 12 H 1.08000 * 119.99953 * 0.02562 * 11 10 8 13 13 C 1.38811 * 119.99557 * 180.02562 * 11 10 8 14 14 N 1.31622 * 119.99920 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00246 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47163 * 90.00107 * 15 13 11 17 17 H 1.48508 * 109.47173 * 210.00302 * 15 13 11 18 18 H 1.48499 * 109.47315 * 330.00628 * 15 13 11 19 19 C 1.55159 * 102.94286 * 22.19321 * 8 7 6 20 20 H 1.08992 * 111.00399 * 82.57349 * 19 8 7 21 21 C 1.53004 * 111.00370 * 206.42573 * 19 8 7 22 22 C 1.47430 * 125.64360 * 174.82958 * 6 4 3 23 23 C 1.40564 * 119.46232 * 179.74597 * 3 2 1 24 24 N 1.30819 * 121.54088 * 0.24876 * 23 3 2 25 25 C 1.33787 * 121.72040 * 359.97438 * 24 23 3 26 26 C 1.40531 * 120.82838 * 180.02562 * 25 24 23 27 27 C 1.36125 * 119.82038 * 179.97438 * 26 25 24 28 28 C 1.39347 * 121.09018 * 0.04783 * 27 26 25 29 29 C 1.36137 * 120.83925 * 359.97438 * 28 27 26 30 30 C 1.40494 * 121.01485 * 180.23414 * 2 1 3 31 31 H 1.09005 * 109.46567 * 94.99460 * 1 2 3 32 32 H 1.09002 * 109.47175 * 214.98791 * 1 2 3 33 33 H 1.08997 * 109.46929 * 334.99331 * 1 2 3 34 34 H 1.08999 * 109.88001 * 300.46009 * 7 6 4 35 35 H 1.09002 * 109.87850 * 61.46599 * 7 6 4 36 36 H 0.96997 * 120.00295 * 266.44896 * 10 8 7 37 37 H 0.96995 * 119.99918 * 179.97438 * 14 13 11 38 38 H 1.08991 * 109.47068 * 173.64604 * 21 19 8 39 39 H 1.08997 * 109.46837 * 293.65096 * 21 19 8 40 40 H 1.09003 * 109.47023 * 53.64418 * 21 19 8 41 41 H 1.08998 * 110.36513 * 274.73335 * 22 6 4 42 42 H 1.09001 * 110.36506 * 37.05853 * 22 6 4 43 43 H 1.08005 * 119.22740 * 180.27257 * 23 3 2 44 44 H 1.08007 * 120.08609 * 359.95828 * 26 25 24 45 45 H 1.07997 * 119.45833 * 180.02562 * 27 26 25 46 46 H 1.07997 * 119.58180 * 179.97438 * 28 27 26 47 47 H 1.08002 * 120.19106 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2235 1.1915 0.0000 4 6 1.5137 2.4875 0.0006 5 8 0.5836 2.6714 -0.7602 6 7 1.8975 3.4656 0.8446 7 6 2.9292 3.3439 1.8850 8 6 3.0068 4.7016 2.6144 9 1 3.8074 5.3157 2.2020 10 7 3.1907 4.5064 4.0546 11 6 4.4505 4.3550 4.5697 12 1 5.3084 4.3799 3.9142 13 6 4.6246 4.1696 5.9343 14 7 5.8354 4.0235 6.4294 15 14 3.1407 4.1272 7.0681 16 1 2.6524 2.7303 7.1923 17 1 3.5268 4.6377 8.4081 18 1 2.0631 4.9799 6.5051 19 6 1.6214 5.3347 2.3187 20 1 0.8656 4.9607 3.0092 21 6 1.6954 6.8622 2.3648 22 6 1.3526 4.8351 0.8772 23 6 3.6286 1.1534 0.0054 24 7 4.2824 0.0203 0.0057 25 6 3.6483 -1.1577 0.0013 26 6 4.3695 -2.3639 0.0021 27 6 3.7033 -3.5510 -0.0019 28 6 2.3105 -3.5944 -0.0079 29 6 1.5765 -2.4479 -0.0093 30 6 2.2310 -1.2041 -0.0049 31 1 -0.3633 -0.0895 -1.0238 32 1 -0.3634 -0.8420 0.5893 33 1 -0.3633 0.9313 0.4344 34 1 2.6539 2.5595 2.5899 35 1 3.8908 3.1105 1.4278 36 1 2.4201 4.4845 4.6434 37 1 5.9571 3.8943 7.3829 38 1 0.7419 7.2819 2.0445 39 1 1.9107 7.1849 3.3835 40 1 2.4865 7.2079 1.6994 41 1 1.8694 5.4663 0.1543 42 1 0.2818 4.8222 0.6738 43 1 4.1814 2.0813 0.0099 44 1 5.4495 -2.3490 0.0057 45 1 4.2634 -4.4743 -0.0008 46 1 1.8070 -4.5498 -0.0114 47 1 0.4975 -2.4938 -0.0136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054921255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:20 Heat of formation + Delta-G solvation = 38.393672 kcal Electronic energy + Delta-G solvation = -29309.010346 eV Core-core repulsion = 25456.907449 eV Total energy + Delta-G solvation = -3852.102897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.24110 -39.82694 -37.88361 -36.97928 -34.71003 -34.23911 -32.75103 -31.17827 -30.74412 -30.53500 -28.28415 -27.95056 -26.43154 -24.43015 -23.99224 -23.61853 -21.52821 -21.20958 -20.26060 -19.87453 -18.16142 -17.92402 -17.58879 -16.91267 -16.15006 -15.81599 -15.38424 -14.91352 -14.68302 -14.53467 -14.26520 -14.16478 -14.09289 -13.56093 -13.34530 -13.25347 -13.20264 -12.88672 -12.66683 -12.56124 -12.35134 -12.22026 -11.93799 -11.88475 -11.76494 -11.62470 -11.45613 -11.17572 -10.85224 -10.70186 -10.40097 -10.30637 -10.19996 -10.07086 -9.68473 -9.45279 -9.07815 -8.94611 -8.50195 -8.36839 -7.44099 -5.87267 -3.25650 0.12592 0.52782 1.72678 2.46749 2.87488 3.10712 3.29858 3.32833 3.39108 3.93486 4.11729 4.30661 4.36781 4.49186 4.49464 4.61194 4.67868 4.87214 4.89850 4.96513 4.99358 5.05942 5.21414 5.25012 5.37894 5.42225 5.47398 5.48653 5.62334 5.63594 5.69062 5.72927 5.76500 5.79669 5.82992 5.91801 6.01800 6.06531 6.14770 6.20371 6.23513 6.30540 6.33549 6.39320 6.42961 6.62253 6.69341 7.56931 7.77506 7.86320 8.13517 8.31166 9.07305 9.79532 9.97063 11.30287 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010235 B = 0.003686 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.120569 B = 7594.484647 C = 9243.549161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.031 3.969 3 C -0.186 4.186 4 C 0.580 3.420 5 O -0.541 6.541 6 N -0.607 5.607 7 C 0.068 3.932 8 C 0.184 3.816 9 H 0.077 0.923 10 N -0.735 5.735 11 C -0.254 4.254 12 H 0.093 0.907 13 C 0.012 3.988 14 N -0.927 5.927 15 Si 0.881 3.119 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.276 1.276 19 C -0.117 4.117 20 H 0.081 0.919 21 C -0.134 4.134 22 C 0.115 3.885 23 C 0.171 3.829 24 N -0.476 5.476 25 C 0.143 3.857 26 C -0.095 4.095 27 C -0.096 4.096 28 C -0.122 4.122 29 C -0.089 4.089 30 C -0.110 4.110 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.364 0.636 37 H 0.261 0.739 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.166 0.834 44 H 0.138 0.862 45 H 0.130 0.870 46 H 0.128 0.872 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.922 -9.603 -14.384 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.022 3.978 3 C -0.191 4.191 4 C 0.368 3.632 5 O -0.420 6.420 6 N -0.340 5.340 7 C -0.057 4.057 8 C 0.072 3.928 9 H 0.095 0.905 10 N -0.377 5.377 11 C -0.383 4.383 12 H 0.111 0.889 13 C -0.185 4.185 14 N -0.574 5.574 15 Si 0.711 3.289 16 H -0.211 1.211 17 H -0.216 1.216 18 H -0.202 1.202 19 C -0.137 4.137 20 H 0.100 0.900 21 C -0.192 4.192 22 C -0.008 4.008 23 C -0.002 4.002 24 N -0.183 5.183 25 C 0.022 3.978 26 C -0.113 4.113 27 C -0.116 4.116 28 C -0.140 4.140 29 C -0.108 4.108 30 C -0.112 4.112 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.198 0.802 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.183 0.817 44 H 0.156 0.844 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.218 -9.679 -14.747 19.903 hybrid contribution -1.658 -0.154 1.072 1.980 sum -10.875 -9.833 -13.675 20.049 Atomic orbital electron populations 1.20934 0.89234 1.03836 1.03598 1.20483 0.96787 0.90633 0.89857 1.20741 0.95477 0.93879 1.08986 1.17613 0.82856 0.82661 0.80046 1.90762 1.28911 1.81478 1.40810 1.48455 1.39584 1.11677 1.34238 1.23453 0.89889 1.03080 0.89296 1.21221 0.94585 0.91483 0.85527 0.90527 1.42703 1.05990 1.87701 1.01265 1.19060 0.84105 1.42902 0.92272 0.88906 1.24664 0.95926 1.01311 0.96561 1.69694 1.19638 1.55352 1.12703 0.86614 0.83188 0.77901 0.81188 1.21061 1.21578 1.20202 1.22669 0.99093 0.96676 0.95272 0.90023 1.21617 1.01168 0.93487 1.02914 1.22295 0.99552 0.81768 0.97181 1.23147 0.89906 0.96770 0.90418 1.67994 1.39346 0.97416 1.13595 1.19022 0.89565 0.92704 0.96525 1.20859 1.00668 0.90072 0.99743 1.20961 0.94493 0.98025 0.98134 1.20918 0.94141 0.98477 1.00501 1.21047 1.00149 0.91041 0.98523 1.18653 0.94027 0.93887 1.04609 0.89365 0.90760 0.90104 0.90819 0.91449 0.80249 0.92884 0.92990 0.91545 0.92345 0.91087 0.90597 0.81676 0.84405 0.85168 0.85418 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 8.61 36.01 0.31 -1.03 16 2 C 0.03 0.42 5.98 -103.47 -0.62 -0.20 16 3 C -0.19 -2.76 5.36 -104.83 -0.56 -3.33 16 4 C 0.58 9.09 6.59 -12.37 -0.08 9.01 16 5 O -0.54 -9.42 15.67 5.31 0.08 -9.33 16 6 N -0.61 -9.06 3.33 -171.66 -0.57 -9.63 16 7 C 0.07 1.11 5.70 -3.07 -0.02 1.09 16 8 C 0.18 3.15 3.06 -66.10 -0.20 2.95 16 9 H 0.08 1.33 8.00 -51.93 -0.42 0.92 16 10 N -0.74 -15.88 4.98 -51.65 -0.26 -16.14 16 11 C -0.25 -6.68 10.46 -15.06 -0.16 -6.84 16 12 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 13 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16 14 N -0.93 -28.09 13.97 55.49 0.78 -27.32 16 15 Si 0.88 21.19 27.73 -169.99 -4.71 16.48 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.28 -6.18 6.52 56.52 0.37 -5.81 16 19 C -0.12 -1.64 3.25 -88.47 -0.29 -1.93 16 20 H 0.08 1.19 8.00 -51.93 -0.42 0.77 16 21 C -0.13 -1.66 9.29 37.16 0.35 -1.32 16 22 C 0.11 1.52 6.40 -2.52 -0.02 1.51 16 23 C 0.17 2.54 9.57 -17.11 -0.16 2.38 16 24 N -0.48 -7.40 10.30 -10.67 -0.11 -7.51 16 25 C 0.14 2.03 6.61 -84.79 -0.56 1.47 16 26 C -0.09 -1.10 9.97 -39.48 -0.39 -1.49 16 27 C -0.10 -0.87 9.94 -39.93 -0.40 -1.27 16 28 C -0.12 -1.06 9.96 -39.92 -0.40 -1.46 16 29 C -0.09 -0.89 9.31 -39.47 -0.37 -1.26 16 30 C -0.11 -1.43 5.74 -106.81 -0.61 -2.04 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.66 6.80 -51.93 -0.35 0.30 16 33 H 0.08 1.03 6.45 -51.93 -0.34 0.70 16 34 H 0.07 1.34 8.03 -51.93 -0.42 0.92 16 35 H 0.07 1.06 5.80 -51.93 -0.30 0.76 16 36 H 0.36 7.84 5.57 -40.82 -0.23 7.61 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 41 H 0.07 0.86 8.04 -51.93 -0.42 0.45 16 42 H 0.08 0.99 7.99 -51.93 -0.41 0.58 16 43 H 0.17 2.24 6.27 -52.48 -0.33 1.91 16 44 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 45 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 46 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 47 H 0.13 1.01 6.56 -52.49 -0.34 0.67 16 LS Contribution 378.61 15.07 5.71 5.71 Total: -1.00 -32.32 378.61 -9.88 -42.20 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -6.52 Total: 9.08 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -4.28 Total: -3.53 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -0.16 Total: -60.60 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.08 Total: -9.33 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.71 Total: 16.48 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.32 -9.88 -42.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054921255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.595 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds