Wall clock time and date at job start Tue Mar 31 2020 23:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39035 * 121.01821 * 2 1 4 4 C 1.47761 * 120.27129 * 0.02562 * 3 2 1 5 5 O 1.21561 * 119.99963 * 313.69533 * 4 3 2 6 6 N 1.34777 * 119.99831 * 133.69162 * 4 3 2 7 7 C 1.47020 * 125.65332 * 354.85582 * 6 4 3 8 8 C 1.54320 * 107.27248 * 181.03874 * 7 6 4 9 9 H 1.09003 * 110.71981 * 263.82849 * 8 7 6 10 10 N 1.46498 * 110.71947 * 140.55500 * 8 7 6 11 11 C 1.36943 * 119.99720 * 86.45381 * 10 8 7 12 12 H 1.08000 * 119.99953 * 0.02562 * 11 10 8 13 13 C 1.38811 * 119.99557 * 180.02562 * 11 10 8 14 14 N 1.31622 * 119.99920 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00246 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47163 * 90.00107 * 15 13 11 17 17 H 1.48508 * 109.47173 * 210.00302 * 15 13 11 18 18 H 1.48499 * 109.47315 * 330.00628 * 15 13 11 19 19 C 1.55159 * 102.94286 * 22.19321 * 8 7 6 20 20 H 1.08992 * 111.00399 * 82.57349 * 19 8 7 21 21 C 1.53004 * 111.00370 * 206.42573 * 19 8 7 22 22 C 1.47430 * 125.64360 * 174.82958 * 6 4 3 23 23 C 1.40564 * 119.46232 * 179.74597 * 3 2 1 24 24 N 1.30819 * 121.54088 * 0.24876 * 23 3 2 25 25 C 1.33787 * 121.72040 * 359.97438 * 24 23 3 26 26 C 1.40531 * 120.82838 * 180.02562 * 25 24 23 27 27 C 1.36125 * 119.82038 * 179.97438 * 26 25 24 28 28 C 1.39347 * 121.09018 * 0.04783 * 27 26 25 29 29 C 1.36137 * 120.83925 * 359.97438 * 28 27 26 30 30 C 1.40494 * 121.01485 * 180.23414 * 2 1 3 31 31 H 1.09005 * 109.46567 * 94.99460 * 1 2 3 32 32 H 1.09002 * 109.47175 * 214.98791 * 1 2 3 33 33 H 1.08997 * 109.46929 * 334.99331 * 1 2 3 34 34 H 1.08999 * 109.88001 * 300.46009 * 7 6 4 35 35 H 1.09002 * 109.87850 * 61.46599 * 7 6 4 36 36 H 0.96997 * 120.00295 * 266.44896 * 10 8 7 37 37 H 0.96995 * 119.99918 * 179.97438 * 14 13 11 38 38 H 1.08991 * 109.47068 * 173.64604 * 21 19 8 39 39 H 1.08997 * 109.46837 * 293.65096 * 21 19 8 40 40 H 1.09003 * 109.47023 * 53.64418 * 21 19 8 41 41 H 1.08998 * 110.36513 * 274.73335 * 22 6 4 42 42 H 1.09001 * 110.36506 * 37.05853 * 22 6 4 43 43 H 1.08005 * 119.22740 * 180.27257 * 23 3 2 44 44 H 1.08007 * 120.08609 * 359.95828 * 26 25 24 45 45 H 1.07997 * 119.45833 * 180.02562 * 27 26 25 46 46 H 1.07997 * 119.58180 * 179.97438 * 28 27 26 47 47 H 1.08002 * 120.19106 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2235 1.1915 0.0000 4 6 1.5137 2.4875 0.0006 5 8 0.5836 2.6714 -0.7602 6 7 1.8975 3.4656 0.8446 7 6 2.9292 3.3439 1.8850 8 6 3.0068 4.7016 2.6144 9 1 3.8074 5.3157 2.2020 10 7 3.1907 4.5064 4.0546 11 6 4.4505 4.3550 4.5697 12 1 5.3084 4.3799 3.9142 13 6 4.6246 4.1696 5.9343 14 7 5.8354 4.0235 6.4294 15 14 3.1407 4.1272 7.0681 16 1 2.6524 2.7303 7.1923 17 1 3.5268 4.6377 8.4081 18 1 2.0631 4.9799 6.5051 19 6 1.6214 5.3347 2.3187 20 1 0.8656 4.9607 3.0092 21 6 1.6954 6.8622 2.3648 22 6 1.3526 4.8351 0.8772 23 6 3.6286 1.1534 0.0054 24 7 4.2824 0.0203 0.0057 25 6 3.6483 -1.1577 0.0013 26 6 4.3695 -2.3639 0.0021 27 6 3.7033 -3.5510 -0.0019 28 6 2.3105 -3.5944 -0.0079 29 6 1.5765 -2.4479 -0.0093 30 6 2.2310 -1.2041 -0.0049 31 1 -0.3633 -0.0895 -1.0238 32 1 -0.3634 -0.8420 0.5893 33 1 -0.3633 0.9313 0.4344 34 1 2.6539 2.5595 2.5899 35 1 3.8908 3.1105 1.4278 36 1 2.4201 4.4845 4.6434 37 1 5.9571 3.8943 7.3829 38 1 0.7419 7.2819 2.0445 39 1 1.9107 7.1849 3.3835 40 1 2.4865 7.2079 1.6994 41 1 1.8694 5.4663 0.1543 42 1 0.2818 4.8222 0.6738 43 1 4.1814 2.0813 0.0099 44 1 5.4495 -2.3490 0.0057 45 1 4.2634 -4.4743 -0.0008 46 1 1.8070 -4.5498 -0.0114 47 1 0.4975 -2.4938 -0.0136 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054921255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:19 Heat of formation + Delta-G solvation = 18.544985 kcal Electronic energy + Delta-G solvation = -29309.871050 eV Core-core repulsion = 25456.907449 eV Total energy + Delta-G solvation = -3852.963601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25428 -40.99189 -39.14559 -37.93017 -36.04221 -35.61343 -34.11791 -32.96876 -31.74832 -31.37300 -29.56096 -29.15119 -27.47719 -25.85577 -25.00596 -24.88494 -22.94613 -22.12527 -21.64695 -21.02199 -19.54213 -19.17672 -18.88391 -18.05646 -17.29156 -17.05867 -16.45488 -16.34624 -15.95490 -15.63981 -15.49006 -15.13758 -15.04588 -14.97828 -14.84825 -14.45958 -14.28724 -14.10257 -13.93965 -13.67143 -13.64842 -13.21634 -13.09014 -12.98073 -12.94280 -12.78431 -12.71520 -12.43300 -12.23223 -12.16433 -11.92211 -11.81248 -11.48320 -11.34360 -11.23254 -10.99514 -10.53982 -9.92070 -9.71903 -9.38322 -9.26993 -8.02428 -5.37800 -0.80488 -0.43527 0.81165 1.37629 1.39406 1.40038 1.47300 1.75929 2.02758 2.47605 2.98859 3.08251 3.23905 3.27555 3.40844 3.50760 3.57481 3.62174 3.78175 3.81353 3.89077 4.10752 4.16762 4.23877 4.26722 4.33267 4.40387 4.42319 4.50549 4.58019 4.59409 4.66258 4.84717 4.85725 4.88987 4.91845 4.98679 5.04439 5.06514 5.10071 5.19606 5.28866 5.35039 5.39907 5.44772 5.47826 5.77079 5.83297 6.20746 6.31782 6.73863 6.91693 7.05971 7.79645 7.98032 9.18516 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010235 B = 0.003686 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2735.120569 B = 7594.484647 C = 9243.549161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.030 3.970 3 C -0.212 4.212 4 C 0.586 3.414 5 O -0.559 6.559 6 N -0.605 5.605 7 C 0.083 3.917 8 C 0.175 3.825 9 H 0.075 0.925 10 N -0.737 5.737 11 C -0.231 4.231 12 H 0.063 0.937 13 C -0.056 4.056 14 N -0.980 5.980 15 Si 0.947 3.053 16 H -0.285 1.285 17 H -0.297 1.297 18 H -0.247 1.247 19 C -0.104 4.104 20 H 0.081 0.919 21 C -0.131 4.131 22 C 0.116 3.884 23 C 0.158 3.842 24 N -0.503 5.503 25 C 0.115 3.885 26 C -0.123 4.123 27 C -0.079 4.079 28 C -0.113 4.113 29 C -0.093 4.093 30 C -0.126 4.126 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.367 0.633 37 H 0.257 0.743 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.165 0.835 44 H 0.139 0.861 45 H 0.165 0.835 46 H 0.168 0.832 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.906 -11.272 -15.223 22.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.022 3.978 3 C -0.217 4.217 4 C 0.374 3.626 5 O -0.440 6.440 6 N -0.337 5.337 7 C -0.042 4.042 8 C 0.065 3.935 9 H 0.093 0.907 10 N -0.379 5.379 11 C -0.362 4.362 12 H 0.081 0.919 13 C -0.248 4.248 14 N -0.630 5.630 15 Si 0.774 3.226 16 H -0.211 1.211 17 H -0.224 1.224 18 H -0.171 1.171 19 C -0.124 4.124 20 H 0.099 0.901 21 C -0.188 4.188 22 C -0.006 4.006 23 C -0.015 4.015 24 N -0.212 5.212 25 C -0.005 4.005 26 C -0.141 4.141 27 C -0.098 4.098 28 C -0.131 4.131 29 C -0.111 4.111 30 C -0.128 4.128 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.201 0.799 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.182 0.818 44 H 0.157 0.843 45 H 0.183 0.817 46 H 0.186 0.814 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -12.247 -11.328 -15.641 22.868 hybrid contribution -0.683 0.193 1.193 1.388 sum -12.930 -11.135 -14.448 22.359 Atomic orbital electron populations 1.20972 0.87513 1.04076 1.04555 1.20857 0.98034 0.90467 0.88455 1.20732 0.95468 0.94160 1.11390 1.17685 0.82458 0.82855 0.79570 1.90737 1.29829 1.81855 1.41531 1.48419 1.39173 1.12420 1.33710 1.23058 0.90335 1.01608 0.89240 1.21420 0.96840 0.92103 0.83102 0.90747 1.42634 1.04233 1.87792 1.03220 1.19014 0.85164 1.40174 0.91813 0.91942 1.25419 0.98677 1.02361 0.98381 1.69873 1.22247 1.58166 1.12750 0.85538 0.80373 0.78114 0.78542 1.21134 1.22406 1.17099 1.22592 0.96436 0.97781 0.95603 0.90081 1.21605 1.02948 0.91932 1.02324 1.22420 1.00272 0.80932 0.96957 1.23141 0.90252 0.96840 0.91274 1.67951 1.40291 0.98220 1.14697 1.19483 0.90768 0.92939 0.97352 1.21064 1.01064 0.90327 1.01664 1.21436 0.95221 0.98229 0.94926 1.21428 0.93924 0.99692 0.98039 1.21415 1.01700 0.90100 0.97923 1.18903 0.93667 0.95060 1.05149 0.88312 0.87988 0.91835 0.92871 0.91571 0.79878 0.93388 0.90356 0.92982 0.91664 0.89481 0.89679 0.81787 0.84311 0.81723 0.81442 0.82272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.61 71.24 0.61 -1.79 16 2 C 0.03 0.82 5.98 -19.12 -0.11 0.70 16 3 C -0.21 -6.50 5.36 -20.00 -0.11 -6.61 16 4 C 0.59 18.43 6.59 86.76 0.57 19.00 16 5 O -0.56 -19.26 15.67 -3.91 -0.06 -19.32 16 6 N -0.61 -17.94 3.33 -815.28 -2.71 -20.66 16 7 C 0.08 2.77 5.70 86.73 0.49 3.26 16 8 C 0.18 5.98 3.06 46.18 0.14 6.12 16 9 H 0.07 2.60 8.00 -2.39 -0.02 2.58 16 10 N -0.74 -31.75 4.98 -317.33 -1.58 -33.33 16 11 C -0.23 -12.44 10.46 84.03 0.88 -11.56 16 12 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 13 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 14 N -0.98 -61.53 13.97 21.65 0.30 -61.22 16 15 Si 0.95 44.06 27.73 68.60 1.90 45.97 16 16 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 17 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 18 H -0.25 -10.15 6.52 99.48 0.65 -9.50 16 19 C -0.10 -2.75 3.25 -9.40 -0.03 -2.78 16 20 H 0.08 2.19 8.00 -2.39 -0.02 2.17 16 21 C -0.13 -2.93 9.29 71.98 0.67 -2.26 16 22 C 0.12 2.89 6.40 86.85 0.56 3.45 16 23 C 0.16 5.00 9.57 85.41 0.82 5.82 16 24 N -0.50 -16.56 10.30 -187.68 -1.93 -18.49 16 25 C 0.11 3.31 6.61 40.29 0.27 3.58 16 26 C -0.12 -2.77 9.97 22.34 0.22 -2.54 16 27 C -0.08 -1.18 9.94 22.04 0.22 -0.96 16 28 C -0.11 -1.49 9.96 22.05 0.22 -1.27 16 29 C -0.09 -1.58 9.31 22.34 0.21 -1.37 16 30 C -0.13 -3.18 5.74 -21.28 -0.12 -3.30 16 31 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.10 1.50 6.80 -2.39 -0.02 1.49 16 33 H 0.06 1.56 6.45 -2.39 -0.02 1.55 16 34 H 0.05 1.99 8.03 -2.39 -0.02 1.97 16 35 H 0.07 2.20 5.80 -2.39 -0.01 2.19 16 36 H 0.37 15.36 5.57 -92.71 -0.52 14.84 16 37 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 40 H 0.06 1.38 8.11 -2.39 -0.02 1.36 16 41 H 0.09 1.93 8.04 -2.39 -0.02 1.91 16 42 H 0.08 2.03 7.99 -2.39 -0.02 2.02 16 43 H 0.17 4.87 6.27 -2.91 -0.02 4.85 16 44 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 45 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 46 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 47 H 0.16 1.75 6.56 -2.91 -0.02 1.73 16 Total: -1.00 -73.45 378.61 2.31 -71.14 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.42 Total: 31.18 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 5.97 Total: 4.73 kcal Atomic # 7 Polarization: -127.78 SS G_CDS: -5.92 Total: -133.71 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.06 Total: -19.32 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.90 Total: 45.97 kcal Total: -73.45 2.31 -71.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054921255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.684 kcal (2) G-P(sol) polarization free energy of solvation -73.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds