Wall clock time and date at job start Tue Mar 31 2020 22:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00487 * 2 1 4 4 H 1.48503 * 109.46813 * 269.99942 * 3 2 1 5 5 H 1.48499 * 109.46980 * 29.99864 * 3 2 1 6 6 H 1.48499 * 109.47069 * 150.00153 * 3 2 1 7 7 C 1.38814 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00509 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00157 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00384 * 179.97438 * 9 7 2 11 11 H 1.09005 * 112.88273 * 23.65340 * 10 9 7 12 12 C 1.54251 * 113.74685 * 252.22323 * 10 9 7 13 13 C 1.53945 * 87.18727 * 270.24852 * 12 10 9 14 14 H 1.09004 * 113.66116 * 220.75072 * 13 12 10 15 15 N 1.46504 * 113.66168 * 89.79136 * 13 12 10 16 16 C 1.34775 * 120.00259 * 106.01040 * 15 13 12 17 17 O 1.21608 * 119.99947 * 359.97438 * 16 15 13 18 18 C 1.47370 * 119.99882 * 179.97438 * 16 15 13 19 19 C 1.39316 * 120.34828 * 359.97438 * 18 16 15 20 20 C 1.38274 * 120.20159 * 179.97438 * 19 18 16 21 21 C 1.38052 * 120.88375 * 0.05155 * 20 19 18 22 22 C 1.38975 * 120.27264 * 359.95124 * 21 20 19 23 23 N 1.37801 * 133.37698 * 180.02562 * 22 21 20 24 24 H 0.97001 * 125.07023 * 359.94343 * 23 22 21 25 25 C 1.36545 * 109.85077 * 180.21899 * 23 22 21 26 26 C 1.34550 * 109.89953 * 359.58403 * 25 23 22 27 27 C 1.40664 * 119.51719 * 0.02562 * 22 21 20 28 28 C 1.52905 * 86.88723 * 335.26929 * 13 12 10 29 29 C 1.52903 * 121.13935 * 259.22767 * 28 13 12 30 30 C 1.53948 * 86.78579 * 209.37811 * 29 28 13 31 31 C 1.52910 * 121.13977 * 150.66004 * 28 13 12 32 32 H 0.96995 * 119.99355 * 359.97438 * 1 2 3 33 33 H 0.97006 * 119.99174 * 359.97438 * 9 7 2 34 34 H 1.09001 * 113.57685 * 155.69293 * 12 10 9 35 35 H 1.09005 * 113.66680 * 24.82006 * 12 10 9 36 36 H 0.97007 * 119.99375 * 286.00621 * 15 13 12 37 37 H 1.08001 * 119.89493 * 0.02676 * 19 18 16 38 38 H 1.08007 * 119.55555 * 180.02562 * 20 19 18 39 39 H 1.08002 * 119.86514 * 179.97438 * 21 20 19 40 40 H 1.08000 * 125.05083 * 179.75193 * 25 23 22 41 41 H 1.07999 * 126.49460 * 180.13936 * 26 25 23 42 42 H 1.09007 * 113.66203 * 323.85032 * 29 28 13 43 43 H 1.08998 * 113.66628 * 94.90343 * 29 28 13 44 44 H 1.09003 * 113.57994 * 270.13035 * 30 29 28 45 45 H 1.08997 * 113.58292 * 139.33641 * 30 29 28 46 46 H 1.08999 * 113.66727 * 265.09787 * 31 28 13 47 47 H 1.09005 * 113.66042 * 36.15241 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3882 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 3.0665 -3.5641 0.4035 12 6 1.9951 -4.4104 -1.3440 13 6 0.7263 -5.1006 -0.8112 14 1 0.6696 -6.1612 -1.0563 15 7 -0.5100 -4.3777 -1.1199 16 6 -1.3428 -4.8427 -2.0721 17 8 -1.0678 -5.8621 -2.6754 18 6 -2.5866 -4.1157 -2.3822 19 6 -2.9091 -2.9474 -1.6951 20 6 -4.0767 -2.2675 -1.9889 21 6 -4.9406 -2.7301 -2.9612 22 6 -4.6469 -3.8925 -3.6639 23 7 -5.2960 -4.5835 -4.6639 24 1 -6.1431 -4.3259 -5.0600 25 6 -4.5716 -5.6882 -5.0097 26 6 -3.4484 -5.7488 -4.2716 27 6 -3.4626 -4.5953 -3.3769 28 6 1.2654 -4.8230 0.5924 29 6 1.9578 -5.9181 1.4044 30 6 1.4399 -5.1939 2.6603 31 6 0.3198 -4.6162 1.7761 32 1 -0.4849 0.8401 0.0004 33 1 0.3554 -2.3880 0.0005 34 1 2.8300 -5.0934 -1.5004 35 1 1.8117 -3.7620 -2.2008 36 1 -0.7292 -3.5643 -0.6389 37 1 -2.2445 -2.5713 -0.9314 38 1 -4.3162 -1.3625 -1.4501 39 1 -5.8484 -2.1861 -3.1770 40 1 -4.8566 -6.4051 -5.7655 41 1 -2.6837 -6.5094 -4.3269 42 1 1.5256 -6.9085 1.2610 43 1 3.0439 -5.9110 1.3119 44 1 2.1268 -4.4388 3.0426 45 1 1.0788 -5.8696 3.4355 46 1 0.0972 -3.5689 1.9805 47 1 -0.5728 -5.2407 1.7372 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078730996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:28 Heat of formation + Delta-G solvation = 87.732017 kcal Electronic energy + Delta-G solvation = -29781.042611 eV Core-core repulsion = 25931.079185 eV Total energy + Delta-G solvation = -3849.963426 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.20397 -40.47158 -38.56118 -36.49457 -35.17517 -33.60451 -32.33180 -31.68807 -29.95332 -29.15984 -28.71173 -25.43018 -24.80703 -24.09847 -23.71734 -22.37178 -21.57547 -20.88968 -20.32838 -19.91547 -18.57152 -17.46034 -16.99550 -16.61117 -15.87810 -15.62364 -15.12935 -15.05332 -14.71377 -14.53772 -14.37264 -14.03350 -13.88231 -13.70002 -13.09282 -12.91110 -12.83111 -12.56326 -12.45303 -12.06689 -11.85467 -11.55134 -11.47010 -11.39503 -11.28307 -11.27381 -10.91249 -10.83692 -10.63490 -10.19558 -10.03414 -9.77027 -9.67823 -9.59127 -9.38194 -9.30088 -8.86870 -8.39596 -8.14753 -7.61698 -7.04923 -5.86670 -3.14294 0.85189 1.71196 2.79038 3.12538 3.25842 3.40192 3.45950 3.46671 3.57041 4.21780 4.50276 4.80038 4.83098 4.86697 5.05749 5.07392 5.15108 5.22387 5.28708 5.33355 5.39323 5.45734 5.47929 5.65291 5.70957 5.87902 5.92110 5.97019 6.00028 6.05886 6.06938 6.10489 6.20670 6.22192 6.34201 6.41478 6.53859 6.56728 6.64231 6.67698 6.74692 6.75770 6.85060 6.85828 7.01451 7.17778 7.22423 7.52799 7.66648 8.04943 8.33391 8.70574 9.44085 9.98341 10.32485 11.36321 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009660 B = 0.004146 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.923987 B = 6752.457400 C = 8702.599602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.008 4.008 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.699 5.699 10 C 0.191 3.809 11 H 0.066 0.934 12 C -0.186 4.186 13 C 0.139 3.861 14 H 0.090 0.910 15 N -0.694 5.694 16 C 0.561 3.439 17 O -0.547 6.547 18 C -0.091 4.091 19 C -0.093 4.093 20 C -0.102 4.102 21 C -0.109 4.109 22 C 0.080 3.920 23 N -0.599 5.599 24 H 0.413 0.587 25 C 0.039 3.961 26 C -0.183 4.183 27 C -0.059 4.059 28 C -0.130 4.130 29 C -0.106 4.106 30 C -0.134 4.134 31 C -0.127 4.127 32 H 0.256 0.744 33 H 0.379 0.621 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.406 0.594 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.120 0.880 40 H 0.169 0.831 41 H 0.155 0.845 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.079 0.921 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.213 -10.513 -3.606 14.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.338 5.338 10 C 0.079 3.921 11 H 0.084 0.916 12 C -0.228 4.228 13 C 0.034 3.966 14 H 0.108 0.892 15 N -0.346 5.346 16 C 0.349 3.651 17 O -0.426 6.426 18 C -0.095 4.095 19 C -0.113 4.113 20 C -0.121 4.121 21 C -0.130 4.130 22 C -0.026 4.026 23 N -0.203 5.203 24 H 0.249 0.751 25 C -0.086 4.086 26 C -0.209 4.209 27 C -0.065 4.065 28 C -0.132 4.132 29 C -0.144 4.144 30 C -0.171 4.171 31 C -0.164 4.164 32 H 0.066 0.934 33 H 0.214 0.786 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.245 0.755 37 H 0.155 0.845 38 H 0.152 0.848 39 H 0.138 0.862 40 H 0.186 0.814 41 H 0.173 0.827 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.098 0.902 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.996 -11.029 -4.072 14.804 hybrid contribution -0.398 1.544 -0.155 1.602 sum -9.393 -9.485 -4.228 14.003 Atomic orbital electron populations 1.69603 1.05042 1.25892 1.57472 1.24696 0.95563 0.97623 1.02573 0.86176 0.78692 0.83695 0.77516 1.21736 1.21782 1.20762 1.19271 0.91182 0.83720 1.43062 0.90906 1.42099 1.05272 0.99394 1.87079 1.20934 0.94548 0.84686 0.91952 0.91597 1.24329 0.96641 1.00258 1.01600 1.21604 0.83732 0.95904 0.95370 0.89173 1.45675 1.21333 1.28875 1.38702 1.18095 0.83081 0.84323 0.79552 1.90684 1.75833 1.25070 1.51000 1.19387 0.95091 0.96727 0.98263 1.21375 0.97141 0.93487 0.99280 1.20784 0.93903 0.99994 0.97417 1.20148 1.00804 0.94534 0.97526 1.18156 0.94404 0.96098 0.93986 1.41653 1.22104 1.22706 1.33806 0.75059 1.21890 0.93634 0.91227 1.01895 1.21922 0.99413 1.00332 0.99185 1.18945 0.93777 0.96302 0.97430 1.23561 0.98704 0.98823 0.92126 1.22507 0.99856 0.96658 0.95407 1.22747 0.98878 0.99593 0.95924 1.22579 0.96278 1.02109 0.95471 0.93372 0.78554 0.90493 0.90963 0.75482 0.84463 0.84826 0.86168 0.81370 0.82739 0.90336 0.91391 0.90099 0.92234 0.90206 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.89 13.06 55.49 0.72 -25.17 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.24 -6.35 9.97 -15.05 -0.15 -6.50 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.70 -16.28 4.74 -52.84 -0.25 -16.53 16 10 C 0.19 3.71 4.37 -67.33 -0.29 3.41 16 11 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 12 C -0.19 -3.42 7.71 -25.59 -0.20 -3.62 16 13 C 0.14 2.45 4.09 -67.48 -0.28 2.18 16 14 H 0.09 1.60 7.50 -51.93 -0.39 1.21 16 15 N -0.69 -12.77 4.88 -54.46 -0.27 -13.04 16 16 C 0.56 10.79 7.76 -12.54 -0.10 10.69 16 17 O -0.55 -11.41 14.71 5.27 0.08 -11.33 16 18 C -0.09 -1.62 5.90 -104.75 -0.62 -2.23 16 19 C -0.09 -1.54 9.53 -39.17 -0.37 -1.91 16 20 C -0.10 -1.44 9.99 -39.64 -0.40 -1.84 16 21 C -0.11 -1.39 10.05 -39.38 -0.40 -1.79 16 22 C 0.08 1.11 7.27 -83.99 -0.61 0.50 16 23 N -0.60 -6.30 6.06 -10.66 -0.06 -6.37 16 24 H 0.41 2.81 8.96 -40.82 -0.37 2.45 16 25 C 0.04 0.43 11.82 -16.76 -0.20 0.23 16 26 C -0.18 -2.72 10.24 -37.78 -0.39 -3.10 16 27 C -0.06 -0.98 6.15 -104.85 -0.64 -1.62 16 28 C -0.13 -2.12 0.78 -154.71 -0.12 -2.24 16 29 C -0.11 -1.44 7.84 -26.29 -0.21 -1.65 16 30 C -0.13 -1.86 8.08 -25.75 -0.21 -2.07 16 31 C -0.13 -2.02 7.24 -26.28 -0.19 -2.21 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.38 9.03 5.16 -40.82 -0.21 8.82 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 36 H 0.41 7.71 4.18 -40.82 -0.17 7.54 16 37 H 0.14 2.38 6.40 -52.49 -0.34 2.04 16 38 H 0.13 1.64 8.06 -52.48 -0.42 1.21 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.15 2.39 7.16 -52.49 -0.38 2.01 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 47 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 380.96 15.07 5.74 5.74 Total: -1.00 -31.21 380.96 -10.96 -42.16 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: -6.44 Total: 22.02 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -5.46 Total: -14.08 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 0.14 Total: -61.10 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.21 -10.96 -42.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078730996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.894 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds