Wall clock time and date at job start Tue Mar 31 2020 22:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00487 * 2 1 4 4 H 1.48503 * 109.46813 * 269.99942 * 3 2 1 5 5 H 1.48499 * 109.46980 * 29.99864 * 3 2 1 6 6 H 1.48499 * 109.47069 * 150.00153 * 3 2 1 7 7 C 1.38814 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00509 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00157 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00384 * 179.97438 * 9 7 2 11 11 H 1.09005 * 112.88273 * 23.65340 * 10 9 7 12 12 C 1.54251 * 113.74685 * 252.22323 * 10 9 7 13 13 C 1.53945 * 87.18727 * 270.24852 * 12 10 9 14 14 H 1.09004 * 113.66116 * 220.75072 * 13 12 10 15 15 N 1.46504 * 113.66168 * 89.79136 * 13 12 10 16 16 C 1.34775 * 120.00259 * 106.01040 * 15 13 12 17 17 O 1.21608 * 119.99947 * 359.97438 * 16 15 13 18 18 C 1.47370 * 119.99882 * 179.97438 * 16 15 13 19 19 C 1.39316 * 120.34828 * 359.97438 * 18 16 15 20 20 C 1.38274 * 120.20159 * 179.97438 * 19 18 16 21 21 C 1.38052 * 120.88375 * 0.05155 * 20 19 18 22 22 C 1.38975 * 120.27264 * 359.95124 * 21 20 19 23 23 N 1.37801 * 133.37698 * 180.02562 * 22 21 20 24 24 H 0.97001 * 125.07023 * 359.94343 * 23 22 21 25 25 C 1.36545 * 109.85077 * 180.21899 * 23 22 21 26 26 C 1.34550 * 109.89953 * 359.58403 * 25 23 22 27 27 C 1.40664 * 119.51719 * 0.02562 * 22 21 20 28 28 C 1.52905 * 86.88723 * 335.26929 * 13 12 10 29 29 C 1.52903 * 121.13935 * 259.22767 * 28 13 12 30 30 C 1.53948 * 86.78579 * 209.37811 * 29 28 13 31 31 C 1.52910 * 121.13977 * 150.66004 * 28 13 12 32 32 H 0.96995 * 119.99355 * 359.97438 * 1 2 3 33 33 H 0.97006 * 119.99174 * 359.97438 * 9 7 2 34 34 H 1.09001 * 113.57685 * 155.69293 * 12 10 9 35 35 H 1.09005 * 113.66680 * 24.82006 * 12 10 9 36 36 H 0.97007 * 119.99375 * 286.00621 * 15 13 12 37 37 H 1.08001 * 119.89493 * 0.02676 * 19 18 16 38 38 H 1.08007 * 119.55555 * 180.02562 * 20 19 18 39 39 H 1.08002 * 119.86514 * 179.97438 * 21 20 19 40 40 H 1.08000 * 125.05083 * 179.75193 * 25 23 22 41 41 H 1.07999 * 126.49460 * 180.13936 * 26 25 23 42 42 H 1.09007 * 113.66203 * 323.85032 * 29 28 13 43 43 H 1.08998 * 113.66628 * 94.90343 * 29 28 13 44 44 H 1.09003 * 113.57994 * 270.13035 * 30 29 28 45 45 H 1.08997 * 113.58292 * 139.33641 * 30 29 28 46 46 H 1.08999 * 113.66727 * 265.09787 * 31 28 13 47 47 H 1.09005 * 113.66042 * 36.15241 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3882 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 3.0665 -3.5641 0.4035 12 6 1.9951 -4.4104 -1.3440 13 6 0.7263 -5.1006 -0.8112 14 1 0.6696 -6.1612 -1.0563 15 7 -0.5100 -4.3777 -1.1199 16 6 -1.3428 -4.8427 -2.0721 17 8 -1.0678 -5.8621 -2.6754 18 6 -2.5866 -4.1157 -2.3822 19 6 -2.9091 -2.9474 -1.6951 20 6 -4.0767 -2.2675 -1.9889 21 6 -4.9406 -2.7301 -2.9612 22 6 -4.6469 -3.8925 -3.6639 23 7 -5.2960 -4.5835 -4.6639 24 1 -6.1431 -4.3259 -5.0600 25 6 -4.5716 -5.6882 -5.0097 26 6 -3.4484 -5.7488 -4.2716 27 6 -3.4626 -4.5953 -3.3769 28 6 1.2654 -4.8230 0.5924 29 6 1.9578 -5.9181 1.4044 30 6 1.4399 -5.1939 2.6603 31 6 0.3198 -4.6162 1.7761 32 1 -0.4849 0.8401 0.0004 33 1 0.3554 -2.3880 0.0005 34 1 2.8300 -5.0934 -1.5004 35 1 1.8117 -3.7620 -2.2008 36 1 -0.7292 -3.5643 -0.6389 37 1 -2.2445 -2.5713 -0.9314 38 1 -4.3162 -1.3625 -1.4501 39 1 -5.8484 -2.1861 -3.1770 40 1 -4.8566 -6.4051 -5.7655 41 1 -2.6837 -6.5094 -4.3269 42 1 1.5256 -6.9085 1.2610 43 1 3.0439 -5.9110 1.3119 44 1 2.1268 -4.4388 3.0426 45 1 1.0788 -5.8696 3.4355 46 1 0.0972 -3.5689 1.9805 47 1 -0.5728 -5.2407 1.7372 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078730996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:27 Heat of formation + Delta-G solvation = 69.475662 kcal Electronic energy + Delta-G solvation = -29781.834265 eV Core-core repulsion = 25931.079185 eV Total energy + Delta-G solvation = -3850.755081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.31623 -41.83520 -39.95407 -37.64341 -36.63528 -35.37582 -33.86678 -32.87745 -31.73848 -30.33851 -29.79974 -26.76570 -26.45031 -25.49074 -25.09314 -23.86914 -22.69067 -22.15073 -21.50592 -21.29226 -19.98170 -19.02465 -18.52514 -17.82494 -17.07746 -16.97676 -16.66575 -16.28754 -16.20751 -15.97065 -15.68930 -15.42217 -15.16645 -15.00779 -14.78478 -14.52054 -13.91704 -13.84737 -13.56115 -13.44924 -13.26152 -13.09472 -12.81905 -12.70910 -12.66120 -12.54745 -12.51902 -12.40961 -12.15588 -11.92126 -11.80714 -11.28138 -11.16109 -10.89418 -10.76267 -10.71113 -10.62982 -9.86604 -9.24415 -8.97821 -8.67884 -7.92610 -5.19784 -0.32050 0.56887 1.49191 1.50242 1.57713 1.70957 1.95987 2.13109 2.26079 2.57409 2.97051 3.39434 3.41181 3.60288 3.74142 3.83583 3.91445 3.98092 4.03468 4.03955 4.15190 4.22182 4.28118 4.29734 4.39609 4.57767 4.66388 4.67265 4.79894 4.84535 4.88660 4.91621 4.92683 5.01896 5.11623 5.13658 5.14410 5.21575 5.26102 5.39344 5.49575 5.54645 5.59369 5.62873 5.66123 5.72635 5.75770 6.11367 6.30607 6.55916 6.75112 7.21960 7.37190 8.08867 8.33851 9.30268 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009660 B = 0.004146 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.923987 B = 6752.457400 C = 8702.599602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.062 4.062 3 Si 0.967 3.033 4 H -0.294 1.294 5 H -0.294 1.294 6 H -0.272 1.272 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.709 5.709 10 C 0.179 3.821 11 H 0.067 0.933 12 C -0.180 4.180 13 C 0.137 3.863 14 H 0.092 0.908 15 N -0.694 5.694 16 C 0.555 3.445 17 O -0.572 6.572 18 C -0.127 4.127 19 C -0.101 4.101 20 C -0.118 4.118 21 C -0.085 4.085 22 C 0.069 3.931 23 N -0.578 5.578 24 H 0.436 0.564 25 C 0.085 3.915 26 C -0.238 4.238 27 C -0.085 4.085 28 C -0.121 4.121 29 C -0.092 4.092 30 C -0.125 4.125 31 C -0.129 4.129 32 H 0.252 0.748 33 H 0.374 0.626 34 H 0.104 0.896 35 H 0.038 0.962 36 H 0.402 0.598 37 H 0.116 0.884 38 H 0.151 0.849 39 H 0.163 0.837 40 H 0.219 0.781 41 H 0.136 0.864 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.048 0.952 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.598 -11.463 -4.286 16.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.256 4.256 3 Si 0.796 3.204 4 H -0.221 1.221 5 H -0.221 1.221 6 H -0.197 1.197 7 C -0.378 4.378 8 H 0.092 0.908 9 N -0.348 5.348 10 C 0.068 3.932 11 H 0.085 0.915 12 C -0.221 4.221 13 C 0.031 3.969 14 H 0.110 0.890 15 N -0.345 5.345 16 C 0.345 3.655 17 O -0.454 6.454 18 C -0.131 4.131 19 C -0.121 4.121 20 C -0.137 4.137 21 C -0.106 4.106 22 C -0.038 4.038 23 N -0.183 5.183 24 H 0.277 0.723 25 C -0.043 4.043 26 C -0.263 4.263 27 C -0.091 4.091 28 C -0.123 4.123 29 C -0.130 4.130 30 C -0.162 4.162 31 C -0.167 4.167 32 H 0.061 0.939 33 H 0.208 0.792 34 H 0.123 0.877 35 H 0.057 0.943 36 H 0.240 0.760 37 H 0.134 0.866 38 H 0.168 0.832 39 H 0.180 0.820 40 H 0.236 0.764 41 H 0.154 0.846 42 H 0.117 0.883 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.103 0.897 46 H 0.067 0.933 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.375 -11.993 -4.748 16.554 hybrid contribution -0.035 1.782 -0.043 1.782 sum -10.410 -10.212 -4.791 15.349 Atomic orbital electron populations 1.69740 1.06081 1.26057 1.58844 1.25385 0.96387 1.00369 1.03417 0.85249 0.77874 0.80196 0.77032 1.22122 1.22092 1.19743 1.19590 0.91461 0.84976 1.41760 0.90806 1.42190 1.05161 1.00153 1.87298 1.21115 0.94712 0.84261 0.93121 0.91472 1.24279 0.98203 1.00111 0.99537 1.21685 0.83138 0.95699 0.96335 0.88957 1.45736 1.21584 1.28656 1.38525 1.18491 0.83700 0.84164 0.79150 1.90639 1.76634 1.26178 1.51935 1.19381 0.95425 0.97830 1.00468 1.21312 0.98042 0.93703 0.99027 1.21002 0.93483 1.00661 0.98600 1.20533 1.01176 0.93580 0.95295 1.18304 0.93984 0.96504 0.95026 1.41678 1.22528 1.21773 1.32328 0.72305 1.22508 0.91200 0.90563 1.00004 1.21914 1.01665 1.00899 1.01830 1.19327 0.94729 0.97540 0.97499 1.23463 0.98655 0.98502 0.91681 1.22540 1.00655 0.96322 0.93497 1.22701 0.97414 0.99590 0.96499 1.22577 0.97359 1.00586 0.96195 0.93861 0.79212 0.87733 0.94273 0.75994 0.86594 0.83162 0.81975 0.76425 0.84621 0.88323 0.89903 0.90888 0.89737 0.93303 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.16 13.06 21.65 0.28 -54.88 16 2 C -0.06 -3.44 5.50 84.86 0.47 -2.98 16 3 Si 0.97 45.29 29.55 68.60 2.03 47.32 16 4 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.25 -13.31 9.97 84.03 0.84 -12.47 16 8 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.71 -34.47 4.74 -321.07 -1.52 -35.99 16 10 C 0.18 7.08 4.37 45.39 0.20 7.28 16 11 H 0.07 2.62 8.10 -2.38 -0.02 2.60 16 12 C -0.18 -6.78 7.71 31.33 0.24 -6.54 16 13 C 0.14 4.97 4.09 45.28 0.19 5.15 16 14 H 0.09 3.32 7.50 -2.39 -0.02 3.30 16 15 N -0.69 -27.42 4.88 -444.48 -2.17 -29.59 16 16 C 0.56 22.96 7.76 86.65 0.67 23.63 16 17 O -0.57 -25.46 14.71 -4.05 -0.06 -25.52 16 18 C -0.13 -4.83 5.90 -19.95 -0.12 -4.95 16 19 C -0.10 -3.57 9.53 22.54 0.21 -3.36 16 20 C -0.12 -3.36 9.99 22.23 0.22 -3.13 16 21 C -0.09 -2.00 10.05 22.40 0.23 -1.77 16 22 C 0.07 1.79 7.27 38.97 0.28 2.08 16 23 N -0.58 -10.10 6.06 -187.64 -1.14 -11.24 16 24 H 0.44 3.81 8.96 -92.71 -0.83 2.98 16 25 C 0.08 1.59 11.82 83.11 0.98 2.57 16 26 C -0.24 -7.08 10.24 23.43 0.24 -6.84 16 27 C -0.08 -2.88 6.15 -20.01 -0.12 -3.00 16 28 C -0.12 -3.95 0.78 -52.31 -0.04 -3.99 16 29 C -0.09 -2.30 7.84 30.88 0.24 -2.05 16 30 C -0.12 -3.25 8.08 31.23 0.25 -3.00 16 31 C -0.13 -4.17 7.24 30.89 0.22 -3.94 16 32 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 33 H 0.37 18.91 5.16 -92.70 -0.48 18.43 16 34 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 35 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.40 16.64 4.18 -92.70 -0.39 16.25 16 37 H 0.12 4.49 6.40 -2.91 -0.02 4.47 16 38 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 39 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.22 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.14 4.45 7.16 -2.91 -0.02 4.43 16 42 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 43 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.05 1.88 7.58 -2.39 -0.02 1.86 16 47 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 Total: -1.00 -72.32 380.96 1.96 -70.36 By element: Atomic # 1 Polarization: 57.53 SS G_CDS: -0.67 Total: 56.86 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 5.21 Total: -17.33 kcal Atomic # 7 Polarization: -127.15 SS G_CDS: -4.55 Total: -131.69 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.06 Total: -25.52 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -72.32 1.96 -70.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078730996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.834 kcal (2) G-P(sol) polarization free energy of solvation -72.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds