Wall clock time and date at job start Tue Mar 31 2020 22:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99532 * 2 1 4 4 H 1.48500 * 109.47239 * 269.99519 * 3 2 1 5 5 H 1.48499 * 109.47455 * 29.99977 * 3 2 1 6 6 H 1.48504 * 109.46770 * 149.99746 * 3 2 1 7 7 C 1.38808 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00003 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00268 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00405 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.88491 * 336.34526 * 10 9 7 12 12 C 1.53952 * 113.74887 * 107.76795 * 10 9 7 13 13 C 1.53949 * 87.29262 * 139.22116 * 12 10 9 14 14 H 1.08997 * 113.75111 * 89.75321 * 13 12 10 15 15 N 1.46508 * 113.65902 * 220.79308 * 13 12 10 16 16 C 1.34767 * 120.00185 * 252.18662 * 15 13 12 17 17 O 1.21592 * 120.00257 * 0.02562 * 16 15 13 18 18 C 1.47583 * 120.00161 * 179.97438 * 16 15 13 19 19 C 1.40244 * 119.83067 * 359.97438 * 18 16 15 20 20 C 1.36193 * 120.37963 * 179.80400 * 19 18 16 21 21 C 1.39925 * 119.95928 * 0.42331 * 20 19 18 22 22 C 1.46248 * 133.84081 * 179.89744 * 21 20 19 23 23 C 1.34461 * 107.03439 * 179.71450 * 22 21 20 24 24 N 1.36561 * 109.97743 * 359.97438 * 23 22 21 25 25 H 0.96998 * 125.07651 * 180.02562 * 24 23 22 26 26 C 1.37825 * 109.85736 * 0.02562 * 24 23 22 27 27 C 1.38688 * 133.36926 * 180.02562 * 26 24 23 28 28 C 1.52902 * 86.78391 * 335.26593 * 13 12 10 29 29 C 1.52910 * 121.13673 * 259.18340 * 28 13 12 30 30 C 1.53954 * 86.78324 * 209.38163 * 29 28 13 31 31 C 1.52906 * 121.14080 * 150.62294 * 28 13 12 32 32 H 0.97002 * 119.99757 * 0.02562 * 1 2 3 33 33 H 0.97008 * 120.00047 * 359.97438 * 9 7 2 34 34 H 1.08999 * 113.58025 * 24.61160 * 12 10 9 35 35 H 1.09001 * 113.57524 * 253.82160 * 12 10 9 36 36 H 0.97002 * 119.99769 * 72.18503 * 15 13 12 37 37 H 1.07997 * 119.80751 * 0.02562 * 19 18 16 38 38 H 1.07998 * 120.02201 * 180.02562 * 20 19 18 39 39 H 1.08000 * 126.48715 * 359.68666 * 22 21 20 40 40 H 1.07999 * 125.01432 * 180.02562 * 23 22 21 41 41 H 1.07992 * 120.16657 * 359.97360 * 27 26 24 42 42 H 1.08997 * 113.66383 * 323.85373 * 29 28 13 43 43 H 1.09005 * 113.66022 * 94.91306 * 29 28 13 44 44 H 1.09001 * 113.57481 * 270.13286 * 30 29 28 45 45 H 1.08995 * 113.65029 * 139.34960 * 30 29 28 46 46 H 1.09002 * 113.66436 * 265.09301 * 31 28 13 47 47 H 1.09003 * 113.66408 * 36.14482 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1123 -2.4707 0.0011 11 1 3.5275 -3.2979 0.4036 12 6 4.7952 -2.7923 -1.3407 13 6 6.0000 -3.2936 -0.5238 14 1 5.9474 -4.3518 -0.2683 15 7 7.2953 -2.9078 -1.0895 16 6 8.0747 -3.8341 -1.6817 17 8 7.7029 -4.9900 -1.7469 18 6 9.3792 -3.4455 -2.2520 19 6 9.8040 -2.1110 -2.1763 20 6 11.0075 -1.7408 -2.6954 21 6 11.8234 -2.6930 -3.3163 22 6 13.1346 -2.6373 -3.9616 23 6 13.4230 -3.8835 -4.3759 24 7 12.4042 -4.7317 -4.0480 25 1 12.3850 -5.6816 -4.2433 26 6 11.4073 -4.0366 -3.3979 27 6 10.1823 -4.4058 -2.8626 28 6 5.5181 -2.3677 0.5935 29 6 6.1771 -1.0090 0.8338 30 6 5.7862 -1.1782 2.3132 31 6 5.7830 -2.6972 2.0629 32 1 -0.4850 0.8401 -0.0004 33 1 3.8647 -0.3620 0.0007 34 1 5.0128 -1.9095 -1.9418 35 1 4.2952 -3.5780 -1.9071 36 1 7.5918 -1.9857 -1.0379 37 1 9.1747 -1.3735 -1.7005 38 1 11.3290 -0.7117 -2.6335 39 1 13.7539 -1.7608 -4.0830 40 1 14.3274 -4.1715 -4.8913 41 1 9.8528 -5.4327 -2.9189 42 1 7.2537 -1.0086 0.6631 43 1 5.6679 -0.1821 0.3386 44 1 4.8029 -0.7739 2.5533 45 1 6.5589 -0.8527 3.0096 46 1 4.9591 -3.2191 2.5497 47 1 6.7488 -3.1713 2.2377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078736685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:01 Heat of formation + Delta-G solvation = 86.681000 kcal Electronic energy + Delta-G solvation = -28704.353835 eV Core-core repulsion = 24854.344834 eV Total energy + Delta-G solvation = -3850.009001 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59843 -40.70085 -39.16001 -36.76407 -34.98256 -34.24825 -32.53708 -32.26774 -30.58677 -29.68372 -29.22698 -25.63142 -25.09745 -24.23622 -23.51614 -22.83414 -21.63600 -21.07558 -20.54867 -20.23874 -18.69491 -18.38300 -17.45371 -16.82852 -16.52150 -16.09696 -15.24373 -15.18481 -14.97995 -14.84775 -14.49995 -14.31447 -14.16649 -13.96597 -13.62348 -13.42761 -13.09544 -12.70916 -12.62794 -12.22443 -12.20721 -12.01244 -11.82076 -11.76089 -11.52013 -11.30008 -11.06189 -10.87419 -10.80635 -10.24812 -10.10077 -10.09730 -10.00832 -9.89135 -9.71916 -9.51417 -8.88685 -8.76788 -8.55771 -8.09174 -7.28121 -5.79483 -3.15047 0.52827 1.17853 2.24202 2.67984 2.92655 3.27182 3.33548 3.36370 3.42913 3.75412 4.33901 4.47649 4.55648 4.62415 4.69235 4.77029 4.81822 4.94214 4.96060 5.07130 5.11293 5.14869 5.21648 5.34321 5.36017 5.53827 5.56920 5.65699 5.69204 5.80508 5.85448 5.87645 5.96060 6.04204 6.14727 6.19270 6.19889 6.24752 6.29489 6.31409 6.36728 6.53361 6.53775 6.71792 6.74960 6.79507 6.96071 7.09884 7.60516 7.97480 8.26503 8.40208 9.17696 9.89874 10.09730 11.38679 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018830 B = 0.002444 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.635609 B =11452.604015 C =11763.275803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.880 3.120 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.246 4.246 8 H 0.092 0.908 9 N -0.730 5.730 10 C 0.200 3.800 11 H 0.090 0.910 12 C -0.174 4.174 13 C 0.132 3.868 14 H 0.114 0.886 15 N -0.705 5.705 16 C 0.559 3.441 17 O -0.544 6.544 18 C -0.115 4.115 19 C -0.114 4.114 20 C -0.079 4.079 21 C -0.088 4.088 22 C -0.211 4.211 23 C 0.059 3.941 24 N -0.592 5.592 25 H 0.418 0.582 26 C 0.081 3.919 27 C -0.061 4.061 28 C -0.123 4.123 29 C -0.120 4.120 30 C -0.132 4.132 31 C -0.124 4.124 32 H 0.260 0.740 33 H 0.363 0.637 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.148 0.852 40 H 0.172 0.828 41 H 0.134 0.866 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.059 0.941 46 H 0.070 0.930 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.016 -6.159 -5.186 30.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.190 4.190 3 Si 0.711 3.289 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.375 4.375 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.087 3.913 11 H 0.108 0.892 12 C -0.216 4.216 13 C 0.027 3.973 14 H 0.132 0.868 15 N -0.356 5.356 16 C 0.346 3.654 17 O -0.423 6.423 18 C -0.119 4.119 19 C -0.133 4.133 20 C -0.097 4.097 21 C -0.093 4.093 22 C -0.236 4.236 23 C -0.069 4.069 24 N -0.195 5.195 25 H 0.255 0.745 26 C -0.026 4.026 27 C -0.082 4.082 28 C -0.126 4.126 29 C -0.157 4.157 30 C -0.170 4.170 31 C -0.161 4.161 32 H 0.070 0.930 33 H 0.198 0.802 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.235 0.765 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.166 0.834 40 H 0.189 0.811 41 H 0.152 0.848 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 28.452 -7.137 -5.239 29.798 hybrid contribution 0.795 1.312 -0.236 1.552 sum 29.247 -5.826 -5.476 30.320 Atomic orbital electron populations 1.69699 1.05087 1.25815 1.57301 1.24677 0.95223 0.97141 1.01984 0.86620 0.79303 0.85208 0.77813 1.21088 1.21707 1.20185 1.19128 0.80553 0.94792 1.43076 0.89042 1.42684 1.03939 1.01841 1.88579 1.21038 0.87894 0.90320 0.92017 0.89164 1.24246 0.96230 1.01069 1.00042 1.22302 0.80796 0.99555 0.94621 0.86836 1.45882 1.19795 1.11700 1.58179 1.18147 0.83850 0.85389 0.77978 1.90761 1.74110 1.18893 1.58513 1.19581 0.95340 0.93911 1.03072 1.20746 0.96767 0.94806 1.01016 1.20179 0.93332 0.98750 0.97464 1.19399 0.95739 0.92494 1.01710 1.21746 0.96809 0.97368 1.07651 1.21905 0.93164 0.90092 1.01713 1.41786 1.15921 1.10887 1.50886 0.74549 1.18100 0.91765 0.91994 1.00737 1.20080 0.90715 1.00153 0.97262 1.23643 0.99356 0.95918 0.93675 1.22471 0.99076 0.96629 0.97570 1.22747 1.02062 0.96550 0.95621 1.22687 1.01262 0.96601 0.95594 0.93036 0.80237 0.90244 0.91568 0.76525 0.85608 0.85367 0.83395 0.81062 0.84773 0.90741 0.91099 0.89342 0.92241 0.91129 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.89 13.97 55.49 0.78 -28.12 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 21.58 27.74 -169.99 -4.71 16.87 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 7 C -0.25 -6.73 10.45 -15.06 -0.16 -6.88 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.73 -16.44 5.13 -52.99 -0.27 -16.71 16 10 C 0.20 3.69 4.36 -67.48 -0.29 3.40 16 11 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16 12 C -0.17 -2.94 7.69 -25.75 -0.20 -3.14 16 13 C 0.13 1.95 4.12 -67.48 -0.28 1.67 16 14 H 0.11 1.78 7.46 -51.93 -0.39 1.39 16 15 N -0.71 -9.20 5.20 -54.40 -0.28 -9.49 16 16 C 0.56 8.00 7.76 -12.45 -0.10 7.90 16 17 O -0.54 -9.53 15.91 5.28 0.08 -9.45 16 18 C -0.11 -1.38 5.87 -104.94 -0.62 -2.00 16 19 C -0.11 -1.14 9.46 -39.56 -0.37 -1.52 16 20 C -0.08 -0.74 10.03 -39.69 -0.40 -1.13 16 21 C -0.09 -0.87 6.37 -105.04 -0.67 -1.54 16 22 C -0.21 -1.59 11.08 -37.70 -0.42 -2.00 16 23 C 0.06 0.34 11.81 -16.78 -0.20 0.14 16 24 N -0.59 -4.08 6.07 -10.68 -0.06 -4.14 16 25 H 0.42 1.72 8.96 -40.82 -0.37 1.35 16 26 C 0.08 0.81 7.26 -84.00 -0.61 0.20 16 27 C -0.06 -0.69 9.61 -39.03 -0.37 -1.07 16 28 C -0.12 -1.84 1.06 -154.72 -0.16 -2.00 16 29 C -0.12 -1.66 6.78 -26.28 -0.18 -1.84 16 30 C -0.13 -1.87 8.08 -25.75 -0.21 -2.08 16 31 C -0.12 -1.71 7.84 -26.29 -0.21 -1.91 16 32 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 33 H 0.36 8.01 3.78 -40.82 -0.15 7.85 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.40 4.39 5.02 -40.82 -0.21 4.18 16 37 H 0.13 1.03 6.36 -52.49 -0.33 0.69 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 39 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.17 0.35 8.06 -52.49 -0.42 -0.07 16 41 H 0.13 1.50 7.62 -52.49 -0.40 1.10 16 42 H 0.07 0.84 7.03 -51.93 -0.36 0.47 16 43 H 0.07 1.10 6.42 -51.93 -0.33 0.77 16 44 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 380.04 15.07 5.73 5.73 Total: -1.00 -34.09 380.04 -10.65 -44.74 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -6.36 Total: 14.31 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -5.54 Total: -13.74 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: 0.16 Total: -58.46 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.87 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.09 -10.65 -44.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078736685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.419 kcal (2) G-P(sol) polarization free energy of solvation -34.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds