Wall clock time and date at job start Tue Mar 31 2020 22:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99532 * 2 1 4 4 H 1.48500 * 109.47239 * 269.99519 * 3 2 1 5 5 H 1.48499 * 109.47455 * 29.99977 * 3 2 1 6 6 H 1.48504 * 109.46770 * 149.99746 * 3 2 1 7 7 C 1.38808 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00003 * 0.02562 * 7 2 1 9 9 N 1.36934 * 120.00268 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00405 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.88491 * 336.34526 * 10 9 7 12 12 C 1.53952 * 113.74887 * 107.76795 * 10 9 7 13 13 C 1.53949 * 87.29262 * 139.22116 * 12 10 9 14 14 H 1.08997 * 113.75111 * 89.75321 * 13 12 10 15 15 N 1.46508 * 113.65902 * 220.79308 * 13 12 10 16 16 C 1.34767 * 120.00185 * 252.18662 * 15 13 12 17 17 O 1.21592 * 120.00257 * 0.02562 * 16 15 13 18 18 C 1.47583 * 120.00161 * 179.97438 * 16 15 13 19 19 C 1.40244 * 119.83067 * 359.97438 * 18 16 15 20 20 C 1.36193 * 120.37963 * 179.80400 * 19 18 16 21 21 C 1.39925 * 119.95928 * 0.42331 * 20 19 18 22 22 C 1.46248 * 133.84081 * 179.89744 * 21 20 19 23 23 C 1.34461 * 107.03439 * 179.71450 * 22 21 20 24 24 N 1.36561 * 109.97743 * 359.97438 * 23 22 21 25 25 H 0.96998 * 125.07651 * 180.02562 * 24 23 22 26 26 C 1.37825 * 109.85736 * 0.02562 * 24 23 22 27 27 C 1.38688 * 133.36926 * 180.02562 * 26 24 23 28 28 C 1.52902 * 86.78391 * 335.26593 * 13 12 10 29 29 C 1.52910 * 121.13673 * 259.18340 * 28 13 12 30 30 C 1.53954 * 86.78324 * 209.38163 * 29 28 13 31 31 C 1.52906 * 121.14080 * 150.62294 * 28 13 12 32 32 H 0.97002 * 119.99757 * 0.02562 * 1 2 3 33 33 H 0.97008 * 120.00047 * 359.97438 * 9 7 2 34 34 H 1.08999 * 113.58025 * 24.61160 * 12 10 9 35 35 H 1.09001 * 113.57524 * 253.82160 * 12 10 9 36 36 H 0.97002 * 119.99769 * 72.18503 * 15 13 12 37 37 H 1.07997 * 119.80751 * 0.02562 * 19 18 16 38 38 H 1.07998 * 120.02201 * 180.02562 * 20 19 18 39 39 H 1.08000 * 126.48715 * 359.68666 * 22 21 20 40 40 H 1.07999 * 125.01432 * 180.02562 * 23 22 21 41 41 H 1.07992 * 120.16657 * 359.97360 * 27 26 24 42 42 H 1.08997 * 113.66383 * 323.85373 * 29 28 13 43 43 H 1.09005 * 113.66022 * 94.91306 * 29 28 13 44 44 H 1.09001 * 113.57481 * 270.13286 * 30 29 28 45 45 H 1.08995 * 113.65029 * 139.34960 * 30 29 28 46 46 H 1.09002 * 113.66436 * 265.09301 * 31 28 13 47 47 H 1.09003 * 113.66408 * 36.14482 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1123 -2.4707 0.0011 11 1 3.5275 -3.2979 0.4036 12 6 4.7952 -2.7923 -1.3407 13 6 6.0000 -3.2936 -0.5238 14 1 5.9474 -4.3518 -0.2683 15 7 7.2953 -2.9078 -1.0895 16 6 8.0747 -3.8341 -1.6817 17 8 7.7029 -4.9900 -1.7469 18 6 9.3792 -3.4455 -2.2520 19 6 9.8040 -2.1110 -2.1763 20 6 11.0075 -1.7408 -2.6954 21 6 11.8234 -2.6930 -3.3163 22 6 13.1346 -2.6373 -3.9616 23 6 13.4230 -3.8835 -4.3759 24 7 12.4042 -4.7317 -4.0480 25 1 12.3850 -5.6816 -4.2433 26 6 11.4073 -4.0366 -3.3979 27 6 10.1823 -4.4058 -2.8626 28 6 5.5181 -2.3677 0.5935 29 6 6.1771 -1.0090 0.8338 30 6 5.7862 -1.1782 2.3132 31 6 5.7830 -2.6972 2.0629 32 1 -0.4850 0.8401 -0.0004 33 1 3.8647 -0.3620 0.0007 34 1 5.0128 -1.9095 -1.9418 35 1 4.2952 -3.5780 -1.9071 36 1 7.5918 -1.9857 -1.0379 37 1 9.1747 -1.3735 -1.7005 38 1 11.3290 -0.7117 -2.6335 39 1 13.7539 -1.7608 -4.0830 40 1 14.3274 -4.1715 -4.8913 41 1 9.8528 -5.4327 -2.9189 42 1 7.2537 -1.0086 0.6631 43 1 5.6679 -0.1821 0.3386 44 1 4.8029 -0.7739 2.5533 45 1 6.5589 -0.8527 3.0096 46 1 4.9591 -3.2191 2.5497 47 1 6.7488 -3.1713 2.2377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078736685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:00 Heat of formation + Delta-G solvation = 64.998954 kcal Electronic energy + Delta-G solvation = -28705.294039 eV Core-core repulsion = 24854.344834 eV Total energy + Delta-G solvation = -3850.949205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.28083 -41.89710 -40.25628 -37.53850 -36.36017 -35.83049 -34.11561 -32.95552 -32.42283 -30.43473 -29.93761 -26.82279 -26.55573 -25.56424 -24.74217 -23.55839 -23.06758 -21.84633 -21.60425 -21.28600 -20.20691 -19.46475 -18.67230 -17.92819 -17.54107 -17.01492 -16.57841 -16.49567 -16.22344 -15.96868 -15.67697 -15.29535 -15.04078 -14.90248 -14.70094 -14.56182 -14.26993 -13.91066 -13.88710 -13.73707 -13.48005 -13.18010 -12.95935 -12.81252 -12.75636 -12.57009 -12.42016 -12.16397 -12.03795 -12.00346 -11.83292 -11.40264 -11.29537 -11.07266 -10.92244 -10.77826 -10.75916 -9.94262 -9.29346 -9.24127 -8.70518 -8.00930 -5.33883 -0.24817 0.46994 1.36860 1.41264 1.48342 1.61158 1.99678 2.05009 2.35762 2.49091 2.94335 3.28182 3.43760 3.49821 3.65891 3.73736 3.77729 3.82729 3.91730 3.98574 4.02001 4.14798 4.18810 4.30069 4.37237 4.52439 4.58744 4.68384 4.69495 4.76034 4.78107 4.84633 4.98477 5.00806 5.03056 5.08275 5.10359 5.16086 5.28517 5.30470 5.44770 5.48343 5.59516 5.62593 5.69726 5.77250 5.79787 6.09814 6.23656 6.55545 6.65000 7.09016 7.19606 7.84713 8.05731 9.20633 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018830 B = 0.002444 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.635609 B =11452.604015 C =11763.275803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.065 4.065 3 Si 0.950 3.050 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.244 1.244 7 C -0.229 4.229 8 H 0.055 0.945 9 N -0.730 5.730 10 C 0.180 3.820 11 H 0.075 0.925 12 C -0.170 4.170 13 C 0.149 3.851 14 H 0.105 0.895 15 N -0.694 5.694 16 C 0.559 3.441 17 O -0.585 6.585 18 C -0.137 4.137 19 C -0.115 4.115 20 C -0.082 4.082 21 C -0.102 4.102 22 C -0.232 4.232 23 C 0.077 3.923 24 N -0.588 5.588 25 H 0.429 0.571 26 C 0.060 3.940 27 C -0.070 4.070 28 C -0.113 4.113 29 C -0.114 4.114 30 C -0.132 4.132 31 C -0.119 4.119 32 H 0.257 0.743 33 H 0.369 0.631 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.411 0.589 37 H 0.145 0.855 38 H 0.153 0.847 39 H 0.168 0.832 40 H 0.214 0.786 41 H 0.124 0.876 42 H 0.110 0.890 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.086 0.914 46 H 0.060 0.940 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.931 -4.784 -5.543 34.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.777 3.223 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.169 1.169 7 C -0.361 4.361 8 H 0.073 0.927 9 N -0.372 5.372 10 C 0.070 3.930 11 H 0.093 0.907 12 C -0.212 4.212 13 C 0.043 3.957 14 H 0.123 0.877 15 N -0.344 5.344 16 C 0.349 3.651 17 O -0.467 6.467 18 C -0.141 4.141 19 C -0.135 4.135 20 C -0.101 4.101 21 C -0.107 4.107 22 C -0.257 4.257 23 C -0.051 4.051 24 N -0.191 5.191 25 H 0.268 0.732 26 C -0.047 4.047 27 C -0.092 4.092 28 C -0.116 4.116 29 C -0.152 4.152 30 C -0.170 4.170 31 C -0.156 4.156 32 H 0.065 0.935 33 H 0.204 0.796 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.250 0.750 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.185 0.815 40 H 0.231 0.769 41 H 0.142 0.858 42 H 0.129 0.871 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.105 0.895 46 H 0.078 0.922 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 33.445 -5.787 -5.597 34.400 hybrid contribution -0.642 0.706 -0.212 0.977 sum 32.803 -5.081 -5.809 33.698 Atomic orbital electron populations 1.69894 1.07199 1.26575 1.59832 1.25505 0.96097 1.01246 1.02820 0.85481 0.79016 0.79686 0.78078 1.20622 1.22452 1.16854 1.19067 0.82733 0.93353 1.40899 0.92713 1.42567 1.02143 1.03555 1.88909 1.21246 0.89452 0.88375 0.93942 0.90726 1.24132 0.97166 1.00833 0.99088 1.21928 0.80967 0.99044 0.93750 0.87728 1.45691 1.18774 1.12272 1.57691 1.18532 0.84529 0.84802 0.77271 1.90736 1.75165 1.20608 1.60153 1.19449 0.94554 0.95230 1.04868 1.20912 0.97390 0.94073 1.01114 1.20491 0.92908 0.99895 0.96761 1.19873 0.96873 0.92468 1.01533 1.22095 0.96277 0.98959 1.08327 1.22634 0.93448 0.89315 0.99705 1.41932 1.15417 1.11737 1.50010 0.73167 1.18163 0.92010 0.92892 1.01615 1.20093 0.91590 0.99736 0.97748 1.23401 0.96176 0.97395 0.94597 1.22572 1.00932 0.94690 0.96980 1.22697 1.01459 0.96328 0.96498 1.22714 1.02075 0.96818 0.93992 0.93451 0.79559 0.90179 0.92679 0.74996 0.83744 0.82968 0.81463 0.76911 0.85775 0.87135 0.92350 0.92177 0.89511 0.92153 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.38 13.97 21.65 0.30 -63.08 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 3 Si 0.95 44.78 27.74 68.60 1.90 46.69 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.24 -10.11 6.52 99.48 0.65 -9.46 16 7 C -0.23 -12.98 10.45 84.03 0.88 -12.11 16 8 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16 9 N -0.73 -33.03 5.13 -321.57 -1.65 -34.68 16 10 C 0.18 6.76 4.36 45.28 0.20 6.95 16 11 H 0.07 3.00 8.10 -2.39 -0.02 2.98 16 12 C -0.17 -5.79 7.69 31.23 0.24 -5.55 16 13 C 0.15 4.28 4.12 45.28 0.19 4.46 16 14 H 0.10 3.27 7.46 -2.39 -0.02 3.26 16 15 N -0.69 -16.95 5.20 -444.28 -2.31 -19.26 16 16 C 0.56 15.70 7.76 86.71 0.67 16.38 16 17 O -0.58 -20.85 15.91 -4.01 -0.06 -20.92 16 18 C -0.14 -3.19 5.87 -20.07 -0.12 -3.31 16 19 C -0.12 -2.06 9.46 22.28 0.21 -1.85 16 20 C -0.08 -1.33 10.03 22.20 0.22 -1.10 16 21 C -0.10 -1.78 6.37 -20.14 -0.13 -1.91 16 22 C -0.23 -2.74 11.08 23.49 0.26 -2.48 16 23 C 0.08 0.61 11.81 83.09 0.98 1.59 16 24 N -0.59 -6.71 6.07 -187.71 -1.14 -7.85 16 25 H 0.43 2.64 8.96 -92.71 -0.83 1.81 16 26 C 0.06 1.13 7.26 38.96 0.28 1.41 16 27 C -0.07 -1.59 9.61 22.63 0.22 -1.37 16 28 C -0.11 -3.22 1.06 -52.32 -0.06 -3.28 16 29 C -0.11 -2.79 6.78 30.89 0.21 -2.58 16 30 C -0.13 -3.37 8.08 31.23 0.25 -3.12 16 31 C -0.12 -3.02 7.84 30.88 0.24 -2.78 16 32 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 33 H 0.37 15.80 3.78 -92.70 -0.35 15.45 16 34 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 36 H 0.41 7.84 5.02 -92.71 -0.47 7.38 16 37 H 0.14 1.88 6.36 -2.91 -0.02 1.86 16 38 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 39 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.21 -0.22 8.06 -2.91 -0.02 -0.24 16 41 H 0.12 2.90 7.62 -2.91 -0.02 2.88 16 42 H 0.11 1.94 7.03 -2.39 -0.02 1.93 16 43 H 0.06 1.62 6.42 -2.38 -0.02 1.60 16 44 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -77.94 380.04 1.59 -76.35 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: -0.68 Total: 36.77 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 5.22 Total: -14.02 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -4.79 Total: -124.87 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.06 Total: -20.92 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.90 Total: 46.69 kcal Total: -77.94 1.59 -76.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078736685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.353 kcal (2) G-P(sol) polarization free energy of solvation -77.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds