Wall clock time and date at job start Tue Mar 31 2020 22:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48497 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47080 * 299.99776 * 3 2 1 6 6 H 1.48506 * 109.47018 * 59.99875 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 112.89013 * 27.11279 * 10 9 7 12 12 C 1.53957 * 113.66469 * 255.76878 * 10 9 7 13 13 C 1.53943 * 87.29592 * 270.26501 * 12 10 9 14 14 H 1.09003 * 113.66370 * 220.70012 * 13 12 10 15 15 N 1.46501 * 113.66632 * 89.73640 * 13 12 10 16 16 C 1.34772 * 120.00384 * 104.50100 * 15 13 12 17 17 O 1.21602 * 119.99828 * 0.02562 * 16 15 13 18 18 C 1.47495 * 120.00468 * 180.02562 * 16 15 13 19 19 C 1.41202 * 126.36990 * 359.69039 * 18 16 15 20 20 C 1.37992 * 106.86461 * 179.89903 * 19 18 16 21 21 C 1.41393 * 131.98472 * 180.02562 * 20 19 18 22 22 C 1.35734 * 119.33116 * 180.32932 * 21 20 19 23 23 C 1.40822 * 119.72467 * 359.97072 * 22 21 20 24 24 C 1.34545 * 120.58108 * 0.02562 * 23 22 21 25 25 N 1.37440 * 120.74024 * 0.02562 * 24 23 22 26 26 C 1.35125 * 131.28091 * 179.97438 * 25 24 23 27 27 C 1.52909 * 113.66450 * 158.58396 * 10 9 7 28 28 C 1.52905 * 121.13976 * 323.85453 * 27 10 9 29 29 C 1.53951 * 86.78325 * 209.37453 * 28 27 10 30 30 C 1.52905 * 121.13949 * 215.28709 * 27 10 9 31 31 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 33 33 H 1.09007 * 113.57592 * 24.87199 * 12 10 9 34 34 H 1.09001 * 113.57931 * 155.57895 * 12 10 9 35 35 H 0.97005 * 119.99657 * 284.51255 * 15 13 12 36 36 H 1.07997 * 126.56382 * 0.03301 * 19 18 16 37 37 H 1.07998 * 120.33164 * 0.31757 * 21 20 19 38 38 H 1.08004 * 120.13613 * 179.97438 * 22 21 20 39 39 H 1.07991 * 119.71272 * 180.02562 * 23 22 21 40 40 H 1.08004 * 119.62808 * 179.97438 * 24 23 22 41 41 H 1.08006 * 125.61856 * 359.96360 * 26 25 24 42 42 H 1.09005 * 113.66191 * 323.84405 * 28 27 10 43 43 H 1.08999 * 113.66553 * 94.89899 * 28 27 10 44 44 H 1.09001 * 113.58062 * 270.12702 * 29 28 27 45 45 H 1.09006 * 113.65276 * 139.34895 * 29 28 27 46 46 H 1.09000 * 113.66438 * 265.09198 * 30 27 10 47 47 H 1.08995 * 113.66448 * 36.15502 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0458 -3.5781 0.4489 12 6 2.0615 -4.3623 -1.3735 13 6 0.7680 -5.0698 -0.9304 14 1 0.7244 -6.1208 -1.2161 15 7 -0.4517 -4.3348 -1.2742 16 6 -1.2194 -4.7465 -2.3026 17 8 -0.8998 -5.7285 -2.9448 18 6 -2.4471 -4.0063 -2.6492 19 6 -2.9460 -2.8589 -1.9945 20 6 -4.1078 -2.4994 -2.6466 21 6 -5.0236 -1.4433 -2.4341 22 6 -6.1084 -1.3312 -3.2423 23 6 -6.3067 -2.2642 -4.2783 24 6 -5.4304 -3.2663 -4.4740 25 7 -4.3254 -3.4007 -3.6679 26 6 -3.3250 -4.3090 -3.6708 27 6 1.2377 -4.8413 0.5068 28 6 0.2350 -4.6741 1.6490 29 6 0.5248 -6.1440 2.0031 30 6 1.8895 -5.9649 1.3135 31 1 -0.4849 0.8401 0.0004 32 1 0.3555 -2.3881 -0.0002 33 1 1.9209 -3.6831 -2.2145 34 1 2.9044 -5.0391 -1.5130 35 1 -0.7068 -3.5516 -0.7618 36 1 -2.5021 -2.3575 -1.1473 37 1 -4.8618 -0.7332 -1.6368 38 1 -6.8165 -0.5298 -3.0914 39 1 -7.1695 -2.1746 -4.9214 40 1 -5.5978 -3.9735 -5.2730 41 1 -3.2283 -5.1361 -4.3586 42 1 0.5574 -3.9680 2.4143 43 1 -0.7867 -4.4984 1.3121 44 1 -0.1305 -6.8521 1.4958 45 1 0.5986 -6.3294 3.0747 46 1 2.1896 -6.8205 0.7086 47 1 2.6769 -5.6216 1.9845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078740094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:22 Heat of formation + Delta-G solvation = 101.996912 kcal Electronic energy + Delta-G solvation = -29550.317826 eV Core-core repulsion = 25700.972972 eV Total energy + Delta-G solvation = -3849.344853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.11406 -40.51977 -38.46855 -36.31496 -35.20118 -33.58416 -33.06996 -32.11485 -30.10941 -29.54141 -27.68069 -25.47032 -25.04234 -24.16154 -23.79745 -22.94350 -21.75130 -21.66864 -20.11176 -19.53809 -18.18541 -17.54663 -17.12975 -16.50735 -16.25206 -15.50713 -15.38005 -15.23598 -15.19095 -14.62435 -14.39479 -14.35567 -14.04571 -13.79397 -13.43952 -13.02491 -12.84744 -12.42827 -12.28980 -12.06305 -11.91628 -11.85830 -11.61332 -11.48592 -11.34865 -11.26658 -10.94117 -10.84131 -10.63519 -10.40194 -10.17042 -10.04336 -9.80881 -9.70336 -9.49759 -9.29212 -8.84049 -8.58926 -8.29831 -7.32312 -7.00003 -5.83614 -3.10813 0.76889 1.38897 2.30675 2.66529 3.40736 3.47413 3.48717 3.51347 3.63135 3.87852 4.45066 4.53453 4.76303 4.77673 4.81186 4.93621 5.02046 5.07244 5.10332 5.21591 5.32572 5.38276 5.47713 5.52123 5.55971 5.68972 5.81098 5.91193 5.94861 5.98605 6.01999 6.07089 6.13625 6.14075 6.17560 6.30962 6.34877 6.37161 6.42305 6.47698 6.67748 6.77014 6.79629 6.83863 6.92449 7.02537 7.20842 7.28819 7.69541 8.06100 8.36369 8.70484 9.47255 10.02758 10.36892 11.39263 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008391 B = 0.004277 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3336.285962 B = 6544.721178 C = 8907.696132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.073 0.927 9 N -0.700 5.700 10 C 0.180 3.820 11 H 0.064 0.936 12 C -0.187 4.187 13 C 0.154 3.846 14 H 0.090 0.910 15 N -0.690 5.690 16 C 0.591 3.409 17 O -0.559 6.559 18 C -0.169 4.169 19 C -0.143 4.143 20 C 0.021 3.979 21 C -0.062 4.062 22 C -0.148 4.148 23 C -0.135 4.135 24 C 0.036 3.964 25 N -0.343 5.343 26 C 0.014 3.986 27 C -0.130 4.130 28 C -0.116 4.116 29 C -0.141 4.141 30 C -0.104 4.104 31 H 0.255 0.745 32 H 0.380 0.620 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.408 0.592 36 H 0.162 0.838 37 H 0.145 0.855 38 H 0.131 0.869 39 H 0.142 0.858 40 H 0.159 0.841 41 H 0.179 0.821 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.418 -8.605 -3.527 13.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.339 5.339 10 C 0.067 3.933 11 H 0.082 0.918 12 C -0.229 4.229 13 C 0.048 3.952 14 H 0.108 0.892 15 N -0.341 5.341 16 C 0.378 3.622 17 O -0.439 6.439 18 C -0.177 4.177 19 C -0.167 4.167 20 C -0.082 4.082 21 C -0.081 4.081 22 C -0.168 4.168 23 C -0.155 4.155 24 C -0.082 4.082 25 N -0.007 5.007 26 C -0.120 4.120 27 C -0.133 4.133 28 C -0.154 4.154 29 C -0.179 4.179 30 C -0.142 4.142 31 H 0.065 0.935 32 H 0.215 0.785 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.247 0.753 36 H 0.179 0.821 37 H 0.163 0.837 38 H 0.149 0.851 39 H 0.160 0.840 40 H 0.176 0.824 41 H 0.196 0.804 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.241 -9.147 -4.137 14.341 hybrid contribution -0.030 1.440 -0.011 1.440 sum -10.271 -7.707 -4.147 13.494 Atomic orbital electron populations 1.69624 1.05002 1.25625 1.57668 1.24689 0.95554 0.97569 1.02754 0.86123 0.78872 0.84111 0.77097 1.20590 1.21948 1.21915 1.19308 0.91175 0.83792 1.42712 0.90942 1.42088 1.05281 0.99364 1.87201 1.21045 0.94620 0.85133 0.92462 0.91842 1.24298 0.96166 1.00247 1.02187 1.21386 0.84363 0.95694 0.93747 0.89194 1.45508 1.23924 1.31703 1.32946 1.17340 0.81959 0.83084 0.79772 1.90714 1.73426 1.27587 1.52211 1.19568 0.97863 0.99897 1.00327 1.21495 0.94901 0.97688 1.02588 1.18791 0.99765 0.95450 0.94170 1.20765 0.92278 0.95485 0.99524 1.20879 0.98889 1.00439 0.96563 1.20676 0.99725 0.95111 1.00012 1.21599 0.87800 1.01639 0.97164 1.41293 1.16521 1.20641 1.22221 1.21909 0.89395 0.97232 1.03434 1.23393 0.98574 0.98363 0.92924 1.22517 0.98895 0.95910 0.98083 1.22858 0.97464 0.97696 0.99854 1.22481 0.96702 0.96975 0.98030 0.93532 0.78521 0.90954 0.90569 0.75323 0.82087 0.83682 0.85067 0.84015 0.82408 0.80408 0.89459 0.91941 0.90770 0.91973 0.91645 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.11 13.06 55.49 0.72 -25.38 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.34 9.98 -15.06 -0.15 -6.49 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.70 -16.44 4.97 -52.99 -0.26 -16.70 16 10 C 0.18 3.50 4.35 -67.48 -0.29 3.20 16 11 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 12 C -0.19 -3.45 7.68 -25.75 -0.20 -3.65 16 13 C 0.15 2.70 4.08 -67.48 -0.28 2.42 16 14 H 0.09 1.58 7.54 -51.93 -0.39 1.19 16 15 N -0.69 -12.67 4.71 -54.42 -0.26 -12.93 16 16 C 0.59 11.20 7.82 -12.49 -0.10 11.10 16 17 O -0.56 -11.68 16.54 5.28 0.09 -11.59 16 18 C -0.17 -2.92 6.12 -105.07 -0.64 -3.56 16 19 C -0.14 -2.40 10.44 -38.55 -0.40 -2.81 16 20 C 0.02 0.33 6.70 -84.01 -0.56 -0.24 16 21 C -0.06 -0.78 10.11 -39.28 -0.40 -1.18 16 22 C -0.15 -1.51 10.07 -39.50 -0.40 -1.91 16 23 C -0.13 -1.23 9.97 -39.91 -0.40 -1.63 16 24 C 0.04 0.37 10.89 -16.34 -0.18 0.19 16 25 N -0.34 -4.72 2.92 -60.42 -0.18 -4.90 16 26 C 0.01 0.21 11.37 -16.17 -0.18 0.03 16 27 C -0.13 -2.12 0.76 -154.71 -0.12 -2.24 16 28 C -0.12 -1.84 7.18 -26.28 -0.19 -2.03 16 29 C -0.14 -1.85 8.08 -25.75 -0.21 -2.06 16 30 C -0.10 -1.39 7.84 -26.28 -0.21 -1.60 16 31 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.38 9.14 5.39 -40.82 -0.22 8.92 16 33 H 0.07 1.53 8.14 -51.92 -0.42 1.11 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.41 7.80 4.89 -40.82 -0.20 7.60 16 36 H 0.16 2.81 7.53 -52.49 -0.40 2.41 16 37 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 39 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.16 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.18 2.27 8.06 -52.48 -0.42 1.84 16 42 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 43 H 0.06 1.01 7.50 -51.93 -0.39 0.62 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 386.40 15.07 5.82 5.82 Total: -1.00 -31.29 386.40 -10.72 -42.01 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: -6.64 Total: 19.67 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -4.99 Total: -12.79 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 0.03 Total: -59.91 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.29 -10.72 -42.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078740094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.007 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds