Wall clock time and date at job start Tue Mar 31 2020 22:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48497 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47080 * 299.99776 * 3 2 1 6 6 H 1.48506 * 109.47018 * 59.99875 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 112.89013 * 27.11279 * 10 9 7 12 12 C 1.53957 * 113.66469 * 255.76878 * 10 9 7 13 13 C 1.53943 * 87.29592 * 270.26501 * 12 10 9 14 14 H 1.09003 * 113.66370 * 220.70012 * 13 12 10 15 15 N 1.46501 * 113.66632 * 89.73640 * 13 12 10 16 16 C 1.34772 * 120.00384 * 104.50100 * 15 13 12 17 17 O 1.21602 * 119.99828 * 0.02562 * 16 15 13 18 18 C 1.47495 * 120.00468 * 180.02562 * 16 15 13 19 19 C 1.41202 * 126.36990 * 359.69039 * 18 16 15 20 20 C 1.37992 * 106.86461 * 179.89903 * 19 18 16 21 21 C 1.41393 * 131.98472 * 180.02562 * 20 19 18 22 22 C 1.35734 * 119.33116 * 180.32932 * 21 20 19 23 23 C 1.40822 * 119.72467 * 359.97072 * 22 21 20 24 24 C 1.34545 * 120.58108 * 0.02562 * 23 22 21 25 25 N 1.37440 * 120.74024 * 0.02562 * 24 23 22 26 26 C 1.35125 * 131.28091 * 179.97438 * 25 24 23 27 27 C 1.52909 * 113.66450 * 158.58396 * 10 9 7 28 28 C 1.52905 * 121.13976 * 323.85453 * 27 10 9 29 29 C 1.53951 * 86.78325 * 209.37453 * 28 27 10 30 30 C 1.52905 * 121.13949 * 215.28709 * 27 10 9 31 31 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 33 33 H 1.09007 * 113.57592 * 24.87199 * 12 10 9 34 34 H 1.09001 * 113.57931 * 155.57895 * 12 10 9 35 35 H 0.97005 * 119.99657 * 284.51255 * 15 13 12 36 36 H 1.07997 * 126.56382 * 0.03301 * 19 18 16 37 37 H 1.07998 * 120.33164 * 0.31757 * 21 20 19 38 38 H 1.08004 * 120.13613 * 179.97438 * 22 21 20 39 39 H 1.07991 * 119.71272 * 180.02562 * 23 22 21 40 40 H 1.08004 * 119.62808 * 179.97438 * 24 23 22 41 41 H 1.08006 * 125.61856 * 359.96360 * 26 25 24 42 42 H 1.09005 * 113.66191 * 323.84405 * 28 27 10 43 43 H 1.08999 * 113.66553 * 94.89899 * 28 27 10 44 44 H 1.09001 * 113.58062 * 270.12702 * 29 28 27 45 45 H 1.09006 * 113.65276 * 139.34895 * 29 28 27 46 46 H 1.09000 * 113.66438 * 265.09198 * 30 27 10 47 47 H 1.08995 * 113.66448 * 36.15502 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0458 -3.5781 0.4489 12 6 2.0615 -4.3623 -1.3735 13 6 0.7680 -5.0698 -0.9304 14 1 0.7244 -6.1208 -1.2161 15 7 -0.4517 -4.3348 -1.2742 16 6 -1.2194 -4.7465 -2.3026 17 8 -0.8998 -5.7285 -2.9448 18 6 -2.4471 -4.0063 -2.6492 19 6 -2.9460 -2.8589 -1.9945 20 6 -4.1078 -2.4994 -2.6466 21 6 -5.0236 -1.4433 -2.4341 22 6 -6.1084 -1.3312 -3.2423 23 6 -6.3067 -2.2642 -4.2783 24 6 -5.4304 -3.2663 -4.4740 25 7 -4.3254 -3.4007 -3.6679 26 6 -3.3250 -4.3090 -3.6708 27 6 1.2377 -4.8413 0.5068 28 6 0.2350 -4.6741 1.6490 29 6 0.5248 -6.1440 2.0031 30 6 1.8895 -5.9649 1.3135 31 1 -0.4849 0.8401 0.0004 32 1 0.3555 -2.3881 -0.0002 33 1 1.9209 -3.6831 -2.2145 34 1 2.9044 -5.0391 -1.5130 35 1 -0.7068 -3.5516 -0.7618 36 1 -2.5021 -2.3575 -1.1473 37 1 -4.8618 -0.7332 -1.6368 38 1 -6.8165 -0.5298 -3.0914 39 1 -7.1695 -2.1746 -4.9214 40 1 -5.5978 -3.9735 -5.2730 41 1 -3.2283 -5.1361 -4.3586 42 1 0.5574 -3.9680 2.4143 43 1 -0.7867 -4.4984 1.3121 44 1 -0.1305 -6.8521 1.4958 45 1 0.5986 -6.3294 3.0747 46 1 2.1896 -6.8205 0.7086 47 1 2.6769 -5.6216 1.9845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078740094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:21 Heat of formation + Delta-G solvation = 85.397757 kcal Electronic energy + Delta-G solvation = -29551.037619 eV Core-core repulsion = 25700.972972 eV Total energy + Delta-G solvation = -3850.064647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.19057 -41.92697 -39.88130 -37.30521 -36.66879 -35.32210 -34.23539 -33.61469 -31.74804 -30.85838 -28.71151 -26.81244 -26.56418 -25.48921 -25.24032 -24.21297 -23.10512 -22.73461 -21.47809 -20.95383 -19.64806 -18.92323 -18.62201 -17.66257 -17.37809 -16.82480 -16.73354 -16.51261 -16.31916 -16.22539 -15.73501 -15.57507 -15.37314 -15.27199 -14.82471 -14.63899 -14.23936 -13.89104 -13.45582 -13.32204 -13.20820 -13.14404 -12.90312 -12.88467 -12.72557 -12.51890 -12.43979 -12.20987 -12.10965 -11.96149 -11.81586 -11.45494 -11.32667 -11.18965 -10.97204 -10.79936 -10.63840 -9.95764 -9.53719 -8.94466 -8.36131 -7.91970 -5.18723 -0.18941 0.36815 1.06655 1.47431 1.48689 1.57403 1.62971 2.25383 2.46278 2.57456 2.59264 3.39225 3.42507 3.55729 3.66574 3.72908 3.83712 3.90141 3.95736 4.02756 4.05313 4.19124 4.22138 4.28255 4.30592 4.43891 4.57613 4.61619 4.66533 4.81191 4.86521 4.88166 4.93752 4.96964 5.02797 5.11122 5.14042 5.21732 5.23908 5.24293 5.30946 5.42562 5.53713 5.56078 5.62267 5.64425 5.73462 5.88161 6.29972 6.30980 6.56322 7.21063 7.37601 8.11500 8.35740 9.30768 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008391 B = 0.004277 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3336.285962 B = 6544.721178 C = 8907.696132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.065 4.065 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.299 1.299 6 H -0.293 1.293 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.710 5.710 10 C 0.165 3.835 11 H 0.065 0.935 12 C -0.180 4.180 13 C 0.152 3.848 14 H 0.095 0.905 15 N -0.691 5.691 16 C 0.587 3.413 17 O -0.584 6.584 18 C -0.197 4.197 19 C -0.182 4.182 20 C 0.022 3.978 21 C -0.104 4.104 22 C -0.120 4.120 23 C -0.129 4.129 24 C 0.024 3.976 25 N -0.341 5.341 26 C 0.013 3.987 27 C -0.120 4.120 28 C -0.124 4.124 29 C -0.126 4.126 30 C -0.092 4.092 31 H 0.250 0.750 32 H 0.373 0.627 33 H 0.038 0.962 34 H 0.105 0.895 35 H 0.403 0.597 36 H 0.137 0.863 37 H 0.146 0.854 38 H 0.164 0.836 39 H 0.188 0.812 40 H 0.197 0.803 41 H 0.199 0.801 42 H 0.073 0.927 43 H 0.048 0.952 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.802 -9.490 -4.454 15.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.258 4.258 3 Si 0.796 3.204 4 H -0.195 1.195 5 H -0.226 1.226 6 H -0.220 1.220 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.349 5.349 10 C 0.054 3.946 11 H 0.083 0.917 12 C -0.222 4.222 13 C 0.047 3.953 14 H 0.113 0.887 15 N -0.340 5.340 16 C 0.376 3.624 17 O -0.467 6.467 18 C -0.204 4.204 19 C -0.206 4.206 20 C -0.083 4.083 21 C -0.123 4.123 22 C -0.140 4.140 23 C -0.148 4.148 24 C -0.092 4.092 25 N -0.004 5.004 26 C -0.121 4.121 27 C -0.122 4.122 28 C -0.162 4.162 29 C -0.163 4.163 30 C -0.130 4.130 31 H 0.059 0.941 32 H 0.207 0.793 33 H 0.057 0.943 34 H 0.123 0.877 35 H 0.240 0.760 36 H 0.155 0.845 37 H 0.163 0.837 38 H 0.182 0.818 39 H 0.205 0.795 40 H 0.214 0.786 41 H 0.216 0.784 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.594 -10.067 -5.057 16.166 hybrid contribution 0.243 1.775 0.188 1.801 sum -11.351 -8.292 -4.868 14.876 Atomic orbital electron populations 1.69768 1.06094 1.25787 1.59104 1.25389 0.96367 1.00382 1.03663 0.85188 0.78273 0.80536 0.76412 1.19486 1.22639 1.21995 1.19619 0.91417 0.85062 1.41308 0.90871 1.42189 1.05139 1.00172 1.87383 1.21273 0.94918 0.84749 0.93639 0.91711 1.24240 0.97870 1.00053 0.99998 1.21457 0.83635 0.95559 0.94691 0.88688 1.45582 1.24195 1.31449 1.32788 1.17662 0.82450 0.82868 0.79393 1.90668 1.74287 1.28671 1.53029 1.19550 0.98192 1.00579 1.02087 1.21277 0.96862 0.98897 1.03517 1.19006 0.99292 0.96017 0.94014 1.20930 0.93720 0.96001 1.01668 1.21418 0.97404 1.00420 0.94776 1.21292 1.00410 0.93561 0.99542 1.22469 0.86476 1.02956 0.97328 1.41495 1.17107 1.19732 1.22104 1.22099 0.89211 0.97816 1.02995 1.23334 0.98477 0.97875 0.92549 1.22521 0.97973 0.98062 0.97628 1.22788 0.97069 0.95193 1.01270 1.22526 0.97030 0.95984 0.97487 0.94061 0.79257 0.94330 0.87723 0.75982 0.84485 0.83674 0.81821 0.79485 0.78621 0.78385 0.90791 0.93283 0.90247 0.89916 0.89697 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.17 13.06 21.65 0.28 -55.89 16 2 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 3 Si 0.97 45.91 29.55 68.60 2.03 47.93 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 7 C -0.24 -13.24 9.98 84.03 0.84 -12.41 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.71 -34.84 4.97 -321.55 -1.60 -36.44 16 10 C 0.16 6.54 4.35 45.28 0.20 6.74 16 11 H 0.06 2.53 8.12 -2.39 -0.02 2.52 16 12 C -0.18 -6.76 7.68 31.23 0.24 -6.52 16 13 C 0.15 5.45 4.08 45.28 0.18 5.63 16 14 H 0.10 3.33 7.54 -2.39 -0.02 3.31 16 15 N -0.69 -27.13 4.71 -444.35 -2.09 -29.22 16 16 C 0.59 23.68 7.82 86.68 0.68 24.35 16 17 O -0.58 -25.28 16.54 -4.04 -0.07 -25.35 16 18 C -0.20 -7.26 6.12 -20.15 -0.12 -7.39 16 19 C -0.18 -6.74 10.44 22.94 0.24 -6.50 16 20 C 0.02 0.68 6.70 38.90 0.26 0.94 16 21 C -0.10 -2.64 10.11 22.47 0.23 -2.42 16 22 C -0.12 -2.10 10.07 22.32 0.22 -1.87 16 23 C -0.13 -1.79 9.97 22.06 0.22 -1.57 16 24 C 0.02 0.43 10.89 82.97 0.90 1.33 16 25 N -0.34 -9.18 2.92 -345.06 -1.01 -10.19 16 26 C 0.01 0.39 11.37 84.14 0.96 1.35 16 27 C -0.12 -3.91 0.76 -52.32 -0.04 -3.95 16 28 C -0.12 -3.98 7.18 30.88 0.22 -3.75 16 29 C -0.13 -3.07 8.08 31.23 0.25 -2.82 16 30 C -0.09 -2.27 7.84 30.88 0.24 -2.02 16 31 H 0.25 14.33 8.31 -92.71 -0.77 13.55 16 32 H 0.37 19.18 5.39 -92.71 -0.50 18.68 16 33 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 35 H 0.40 16.88 4.89 -92.70 -0.45 16.43 16 36 H 0.14 5.54 7.53 -2.91 -0.02 5.52 16 37 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 38 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 39 H 0.19 0.97 8.06 -2.92 -0.02 0.95 16 40 H 0.20 1.83 8.06 -2.91 -0.02 1.80 16 41 H 0.20 4.96 8.06 -2.91 -0.02 4.94 16 42 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 43 H 0.05 1.68 7.50 -2.39 -0.02 1.66 16 44 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 46 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -71.79 386.40 3.78 -68.01 By element: Atomic # 1 Polarization: 55.14 SS G_CDS: 0.04 Total: 55.19 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 6.19 Total: -14.05 kcal Atomic # 7 Polarization: -127.32 SS G_CDS: -4.41 Total: -131.74 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -0.07 Total: -25.35 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -71.79 3.78 -68.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078740094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.406 kcal (2) G-P(sol) polarization free energy of solvation -71.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds