Wall clock time and date at job start Tue Mar 31 2020 23:03:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.39046 * 121.02229 * 2 1
4 4 C 1.47764 * 120.26198 * 0.05500 * 3 2 1
5 5 O 1.21557 * 120.00201 * 6.29037 * 4 3 2
6 6 N 1.34775 * 119.99444 * 186.30052 * 4 3 2
7 7 C 1.46508 * 119.99846 * 180.02562 * 6 4 3
8 8 H 1.09001 * 110.63951 * 36.67841 * 7 6 4
9 9 C 1.54323 * 110.71689 * 273.54318 * 7 6 4
10 10 N 1.47023 * 107.26896 * 219.44129 * 9 7 6
11 11 C 1.36936 * 125.64597 * 178.97516 * 10 9 7
12 12 H 1.08005 * 119.99411 * 179.97438 * 11 10 9
13 13 C 1.38803 * 120.00272 * 359.97438 * 11 10 9
14 14 N 1.31618 * 120.00002 * 359.97438 * 13 11 10
15 15 Si 1.86802 * 120.00295 * 180.02562 * 13 11 10
16 16 H 1.48505 * 109.46903 * 359.97438 * 15 13 11
17 17 H 1.48494 * 109.47549 * 119.99667 * 15 13 11
18 18 H 1.48504 * 109.47238 * 240.00083 * 15 13 11
19 19 C 1.47425 * 108.70156 * 358.94171 * 10 9 7
20 20 C 1.54900 * 104.83345 * 24.12789 * 19 10 9
21 21 H 1.08995 * 111.00743 * 81.06921 * 20 19 10
22 22 C 1.53006 * 111.00511 * 204.91628 * 20 19 10
23 23 C 1.40562 * 119.46897 * 180.28092 * 3 2 1
24 24 N 1.30816 * 121.53568 * 359.76647 * 23 3 2
25 25 C 1.33793 * 121.71828 * 0.02562 * 24 23 3
26 26 C 1.40535 * 120.81642 * 179.97438 * 25 24 23
27 27 C 1.36126 * 119.81860 * 180.02562 * 26 25 24
28 28 C 1.39343 * 121.08802 * 359.97438 * 27 26 25
29 29 C 1.36140 * 120.84237 * 0.02562 * 28 27 26
30 30 C 1.40492 * 121.01728 * 179.83570 * 2 1 3
31 31 H 1.09000 * 109.46969 * 276.63155 * 1 2 3
32 32 H 1.09002 * 109.46888 * 36.63151 * 1 2 3
33 33 H 1.08997 * 109.47290 * 156.63053 * 1 2 3
34 34 H 0.96996 * 120.00733 * 359.97438 * 6 4 3
35 35 H 1.08999 * 109.88420 * 338.85960 * 9 7 6
36 36 H 1.09001 * 109.88472 * 99.86895 * 9 7 6
37 37 H 0.97007 * 119.99964 * 180.02562 * 14 13 11
38 38 H 1.09006 * 110.36371 * 142.96933 * 19 10 9
39 39 H 1.09009 * 110.36580 * 265.17652 * 19 10 9
40 40 H 1.08997 * 109.47395 * 172.19764 * 22 20 19
41 41 H 1.08998 * 109.47268 * 292.19806 * 22 20 19
42 42 H 1.08997 * 109.46724 * 52.19812 * 22 20 19
43 43 H 1.07997 * 119.22933 * 179.74957 * 23 3 2
44 44 H 1.08009 * 120.09053 * 0.07088 * 26 25 24
45 45 H 1.08000 * 119.45651 * 180.02562 * 27 26 25
46 46 H 1.08004 * 119.58171 * 180.02562 * 28 27 26
47 47 H 1.07996 * 120.18805 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2236 1.1916 0.0000
4 6 1.5136 2.4875 0.0012
5 8 0.3040 2.5178 0.1176
6 7 2.2073 3.6359 -0.1269
7 6 1.5036 4.9209 -0.1251
8 1 0.6653 4.8989 0.5713
9 6 1.0232 5.2822 -1.5465
10 7 1.2287 6.7273 -1.7225
11 6 0.9475 7.4410 -2.8568
12 1 1.1349 8.5043 -2.8860
13 6 0.4217 6.7981 -3.9689
14 7 0.1938 5.5023 -3.9334
15 14 0.0387 7.7716 -5.5165
16 1 0.3834 9.1999 -5.3008
17 1 0.8358 7.2351 -6.6488
18 1 -1.4081 7.6540 -5.8300
19 6 1.7869 7.2807 -0.4753
20 6 2.4769 6.0794 0.2177
21 1 3.4646 5.8984 -0.2062
22 6 2.5628 6.2941 1.7302
23 6 3.6287 1.1535 -0.0060
24 7 4.2824 0.0204 -0.0071
25 6 3.6482 -1.1576 -0.0030
26 6 4.3695 -2.3637 -0.0048
27 6 3.7034 -3.5509 -0.0011
28 6 2.3107 -3.5944 0.0049
29 6 1.5765 -2.4479 0.0068
30 6 2.2309 -1.2040 0.0035
31 1 -0.3633 0.1187 1.0208
32 1 -0.3633 0.8247 -0.6132
33 1 -0.3634 -0.9433 -0.4076
34 1 3.1726 3.6118 -0.2195
35 1 1.6056 4.7321 -2.2856
36 1 -0.0342 5.0401 -1.6532
37 1 -0.1733 5.0529 -4.7107
38 1 2.5158 8.0597 -0.6988
39 1 0.9899 7.6772 0.1539
40 1 2.9231 5.3824 2.2067
41 1 3.2516 7.1117 1.9426
42 1 1.5748 6.5411 2.1188
43 1 4.1814 2.0813 -0.0101
44 1 5.4495 -2.3487 -0.0083
45 1 4.2637 -4.4742 -0.0021
46 1 1.8071 -4.5499 0.0082
47 1 0.4976 -2.4940 0.0111
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001080150880.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:03:35
Heat of formation + Delta-G solvation = 46.551827 kcal
Electronic energy + Delta-G solvation = -29053.280746 eV
Core-core repulsion = 25201.531613 eV
Total energy + Delta-G solvation = -3851.749133 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.22269 -39.50448 -37.71162 -36.94083 -34.72578 -33.90955 -32.72830 -30.91112
-30.51338 -30.37290 -28.37377 -27.37993 -25.64408 -24.56169 -24.08989 -23.38579
-21.27075 -21.09282 -20.03813 -19.81167 -18.25436 -17.89615 -17.10450 -16.77619
-15.90612 -15.66140 -15.21008 -14.88716 -14.62487 -14.47382 -14.14296 -14.03910
-13.88780 -13.65548 -13.15371 -12.96014 -12.88329 -12.77360 -12.70220 -12.18275
-12.04087 -11.98123 -11.87122 -11.71013 -11.66772 -11.34274 -11.01938 -10.79336
-10.62421 -10.37110 -10.29909 -9.98277 -9.91531 -9.90696 -9.70243 -9.26869
-9.01671 -8.63053 -8.55138 -8.35546 -6.82919 -5.68654 -3.03839 0.09332
0.45262 1.69802 2.46532 3.28219 3.40464 3.42244 3.46322 3.49026
3.95165 4.02520 4.31429 4.50090 4.52119 4.53417 4.64004 4.81106
4.88474 4.98667 5.10193 5.20162 5.30235 5.31227 5.43157 5.53712
5.55824 5.64974 5.71804 5.74370 5.78353 5.85743 5.96624 5.97910
6.04476 6.13581 6.14217 6.18199 6.28984 6.32749 6.41517 6.48634
6.58761 6.62301 6.75256 6.92152 7.54833 7.59019 7.68947 7.83291
7.87187 8.26111 8.48630 9.22315 9.83105 10.47691 11.41942
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.014302 B = 0.002830 C = 0.002593
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1957.234475 B = 9891.909680 C =10794.479421
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C 0.048 3.952
3 C -0.197 4.197
4 C 0.562 3.438
5 O -0.526 6.526
6 N -0.706 5.706
7 C 0.122 3.878
8 H 0.089 0.911
9 C 0.173 3.827
10 N -0.606 5.606
11 C -0.229 4.229
12 H 0.079 0.921
13 C -0.008 4.008
14 N -0.918 5.918
15 Si 0.911 3.089
16 H -0.280 1.280
17 H -0.291 1.291
18 H -0.291 1.291
19 C 0.141 3.859
20 C -0.114 4.114
21 H 0.078 0.922
22 C -0.138 4.138
23 C 0.169 3.831
24 N -0.485 5.485
25 C 0.143 3.857
26 C -0.100 4.100
27 C -0.094 4.094
28 C -0.126 4.126
29 C -0.084 4.084
30 C -0.114 4.114
31 H 0.087 0.913
32 H 0.109 0.891
33 H 0.064 0.936
34 H 0.394 0.606
35 H 0.050 0.950
36 H 0.048 0.952
37 H 0.251 0.749
38 H 0.042 0.958
39 H 0.022 0.978
40 H 0.050 0.950
41 H 0.054 0.946
42 H 0.055 0.945
43 H 0.161 0.839
44 H 0.136 0.864
45 H 0.130 0.870
46 H 0.128 0.872
47 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.123 -16.126 11.895 21.267
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.039 3.961
3 C -0.202 4.202
4 C 0.349 3.651
5 O -0.404 6.404
6 N -0.356 5.356
7 C 0.017 3.983
8 H 0.107 0.893
9 C 0.048 3.952
10 N -0.333 5.333
11 C -0.358 4.358
12 H 0.097 0.903
13 C -0.205 4.205
14 N -0.565 5.565
15 Si 0.742 3.258
16 H -0.205 1.205
17 H -0.218 1.218
18 H -0.218 1.218
19 C 0.014 3.986
20 C -0.134 4.134
21 H 0.096 0.904
22 C -0.196 4.196
23 C -0.005 4.005
24 N -0.193 5.193
25 C 0.022 3.978
26 C -0.118 4.118
27 C -0.114 4.114
28 C -0.144 4.144
29 C -0.103 4.103
30 C -0.116 4.116
31 H 0.105 0.895
32 H 0.128 0.872
33 H 0.083 0.917
34 H 0.229 0.771
35 H 0.068 0.932
36 H 0.067 0.933
37 H 0.062 0.938
38 H 0.060 0.940
39 H 0.040 0.960
40 H 0.069 0.931
41 H 0.073 0.927
42 H 0.074 0.926
43 H 0.178 0.822
44 H 0.154 0.846
45 H 0.148 0.852
46 H 0.146 0.854
47 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges 7.083 -16.222 11.752 21.247
hybrid contribution -0.510 0.455 -1.021 1.229
sum 6.573 -15.767 10.730 20.173
Atomic orbital electron populations
1.21206 0.88623 1.04051 1.04481 1.20689 0.97400 0.90451 0.87518
1.20891 0.95070 0.94594 1.09660 1.17833 0.87002 0.83231 0.77072
1.90738 1.13331 1.86802 1.49517 1.45853 1.10318 1.05953 1.73500
1.22532 0.94501 0.80102 1.01151 0.89330 1.21473 1.00008 0.84671
0.89074 1.44420 1.74728 1.04133 1.10018 1.19086 1.36034 0.91665
0.88976 0.90279 1.24826 1.01365 0.95986 0.98280 1.69983 1.49840
1.07403 1.29295 0.86055 0.77691 0.78853 0.83212 1.20505 1.21803
1.21758 1.21587 0.94974 0.93647 0.88349 1.22618 0.98855 0.96638
0.95274 0.90375 1.21706 1.01780 1.00965 0.95103 1.23022 0.90253
0.96513 0.90706 1.67938 1.39500 0.97469 1.14349 1.18995 0.89610
0.92616 0.96550 1.20815 1.00477 0.90112 1.00425 1.20963 0.94529
0.97980 0.97918 1.20925 0.94104 0.98543 1.00798 1.21135 1.00413
0.91018 0.97741 1.18738 0.94010 0.94106 1.04736 0.89513 0.87233
0.91695 0.77115 0.93163 0.93335 0.93818 0.93962 0.96002 0.93077
0.92730 0.92561 0.82170 0.84588 0.85234 0.85386 0.84720
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.62 8.47 36.00 0.31 -1.31 16
2 C 0.05 0.66 5.99 -103.47 -0.62 0.04 16
3 C -0.20 -2.84 5.89 -104.83 -0.62 -3.46 16
4 C 0.56 9.41 7.71 -12.37 -0.10 9.31 16
5 O -0.53 -10.31 13.18 5.32 0.07 -10.24 16
6 N -0.71 -11.15 5.08 -53.00 -0.27 -11.42 16
7 C 0.12 2.26 2.70 -66.09 -0.18 2.08 16
8 H 0.09 1.73 7.60 -51.93 -0.39 1.34 16
9 C 0.17 4.25 5.12 -3.06 -0.02 4.24 16
10 N -0.61 -15.41 3.39 -170.07 -0.58 -15.99 16
11 C -0.23 -6.40 10.28 -15.06 -0.15 -6.56 16
12 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16
13 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16
14 N -0.92 -27.44 10.31 55.49 0.57 -26.87 16
15 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16
16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
17 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16
19 C 0.14 2.82 6.70 -2.53 -0.02 2.80 16
20 C -0.11 -1.85 3.25 -88.48 -0.29 -2.13 16
21 H 0.08 1.21 8.00 -51.93 -0.42 0.79 16
22 C -0.14 -1.77 9.31 37.16 0.35 -1.42 16
23 C 0.17 2.18 10.67 -17.11 -0.18 2.00 16
24 N -0.48 -6.59 10.30 -10.68 -0.11 -6.70 16
25 C 0.14 1.84 6.61 -84.79 -0.56 1.28 16
26 C -0.10 -1.02 9.97 -39.48 -0.39 -1.41 16
27 C -0.09 -0.76 9.94 -39.93 -0.40 -1.15 16
28 C -0.13 -1.01 9.96 -39.92 -0.40 -1.41 16
29 C -0.08 -0.82 9.32 -39.46 -0.37 -1.19 16
30 C -0.11 -1.43 5.74 -106.81 -0.61 -2.04 16
31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16
32 H 0.11 1.71 5.96 -51.93 -0.31 1.40 16
33 H 0.06 0.65 6.21 -51.93 -0.32 0.32 16
34 H 0.39 5.07 6.58 -40.82 -0.27 4.80 16
35 H 0.05 1.37 7.27 -51.93 -0.38 0.99 16
36 H 0.05 1.39 7.50 -51.93 -0.39 1.00 16
37 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16
38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16
39 H 0.02 0.44 7.99 -51.92 -0.41 0.02 16
40 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16
41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
42 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16
43 H 0.16 1.63 6.42 -52.49 -0.34 1.29 16
44 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16
45 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16
46 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16
47 H 0.14 1.05 6.31 -52.49 -0.33 0.72 16
LS Contribution 377.04 15.07 5.68 5.68
Total: -1.00 -33.83 377.04 -10.48 -44.31
By element:
Atomic # 1 Polarization: 11.07 SS G_CDS: -6.48 Total: 4.58 kcal
Atomic # 6 Polarization: 3.68 SS G_CDS: -4.34 Total: -0.66 kcal
Atomic # 7 Polarization: -60.59 SS G_CDS: -0.38 Total: -60.98 kcal
Atomic # 8 Polarization: -10.31 SS G_CDS: 0.07 Total: -10.24 kcal
Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal
Total LS contribution 5.68 Total: 5.68 kcal
Total: -33.83 -10.48 -44.31 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001080150880.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.864 kcal
(2) G-P(sol) polarization free energy of solvation -33.830 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.034 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.313 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.552 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds