Wall clock time and date at job start Tue Mar 31 2020 23:03:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.39046 * 121.02229 * 2 1
4 4 C 1.47764 * 120.26198 * 0.05500 * 3 2 1
5 5 O 1.21557 * 120.00201 * 6.29037 * 4 3 2
6 6 N 1.34775 * 119.99444 * 186.30052 * 4 3 2
7 7 C 1.46508 * 119.99846 * 180.02562 * 6 4 3
8 8 H 1.09001 * 110.63951 * 36.67841 * 7 6 4
9 9 C 1.54323 * 110.71689 * 273.54318 * 7 6 4
10 10 N 1.47023 * 107.26896 * 219.44129 * 9 7 6
11 11 C 1.36936 * 125.64597 * 178.97516 * 10 9 7
12 12 H 1.08005 * 119.99411 * 179.97438 * 11 10 9
13 13 C 1.38803 * 120.00272 * 359.97438 * 11 10 9
14 14 N 1.31618 * 120.00002 * 359.97438 * 13 11 10
15 15 Si 1.86802 * 120.00295 * 180.02562 * 13 11 10
16 16 H 1.48505 * 109.46903 * 359.97438 * 15 13 11
17 17 H 1.48494 * 109.47549 * 119.99667 * 15 13 11
18 18 H 1.48504 * 109.47238 * 240.00083 * 15 13 11
19 19 C 1.47425 * 108.70156 * 358.94171 * 10 9 7
20 20 C 1.54900 * 104.83345 * 24.12789 * 19 10 9
21 21 H 1.08995 * 111.00743 * 81.06921 * 20 19 10
22 22 C 1.53006 * 111.00511 * 204.91628 * 20 19 10
23 23 C 1.40562 * 119.46897 * 180.28092 * 3 2 1
24 24 N 1.30816 * 121.53568 * 359.76647 * 23 3 2
25 25 C 1.33793 * 121.71828 * 0.02562 * 24 23 3
26 26 C 1.40535 * 120.81642 * 179.97438 * 25 24 23
27 27 C 1.36126 * 119.81860 * 180.02562 * 26 25 24
28 28 C 1.39343 * 121.08802 * 359.97438 * 27 26 25
29 29 C 1.36140 * 120.84237 * 0.02562 * 28 27 26
30 30 C 1.40492 * 121.01728 * 179.83570 * 2 1 3
31 31 H 1.09000 * 109.46969 * 276.63155 * 1 2 3
32 32 H 1.09002 * 109.46888 * 36.63151 * 1 2 3
33 33 H 1.08997 * 109.47290 * 156.63053 * 1 2 3
34 34 H 0.96996 * 120.00733 * 359.97438 * 6 4 3
35 35 H 1.08999 * 109.88420 * 338.85960 * 9 7 6
36 36 H 1.09001 * 109.88472 * 99.86895 * 9 7 6
37 37 H 0.97007 * 119.99964 * 180.02562 * 14 13 11
38 38 H 1.09006 * 110.36371 * 142.96933 * 19 10 9
39 39 H 1.09009 * 110.36580 * 265.17652 * 19 10 9
40 40 H 1.08997 * 109.47395 * 172.19764 * 22 20 19
41 41 H 1.08998 * 109.47268 * 292.19806 * 22 20 19
42 42 H 1.08997 * 109.46724 * 52.19812 * 22 20 19
43 43 H 1.07997 * 119.22933 * 179.74957 * 23 3 2
44 44 H 1.08009 * 120.09053 * 0.07088 * 26 25 24
45 45 H 1.08000 * 119.45651 * 180.02562 * 27 26 25
46 46 H 1.08004 * 119.58171 * 180.02562 * 28 27 26
47 47 H 1.07996 * 120.18805 * 179.97438 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2236 1.1916 0.0000
4 6 1.5136 2.4875 0.0012
5 8 0.3040 2.5178 0.1176
6 7 2.2073 3.6359 -0.1269
7 6 1.5036 4.9209 -0.1251
8 1 0.6653 4.8989 0.5713
9 6 1.0232 5.2822 -1.5465
10 7 1.2287 6.7273 -1.7225
11 6 0.9475 7.4410 -2.8568
12 1 1.1349 8.5043 -2.8860
13 6 0.4217 6.7981 -3.9689
14 7 0.1938 5.5023 -3.9334
15 14 0.0387 7.7716 -5.5165
16 1 0.3834 9.1999 -5.3008
17 1 0.8358 7.2351 -6.6488
18 1 -1.4081 7.6540 -5.8300
19 6 1.7869 7.2807 -0.4753
20 6 2.4769 6.0794 0.2177
21 1 3.4646 5.8984 -0.2062
22 6 2.5628 6.2941 1.7302
23 6 3.6287 1.1535 -0.0060
24 7 4.2824 0.0204 -0.0071
25 6 3.6482 -1.1576 -0.0030
26 6 4.3695 -2.3637 -0.0048
27 6 3.7034 -3.5509 -0.0011
28 6 2.3107 -3.5944 0.0049
29 6 1.5765 -2.4479 0.0068
30 6 2.2309 -1.2040 0.0035
31 1 -0.3633 0.1187 1.0208
32 1 -0.3633 0.8247 -0.6132
33 1 -0.3634 -0.9433 -0.4076
34 1 3.1726 3.6118 -0.2195
35 1 1.6056 4.7321 -2.2856
36 1 -0.0342 5.0401 -1.6532
37 1 -0.1733 5.0529 -4.7107
38 1 2.5158 8.0597 -0.6988
39 1 0.9899 7.6772 0.1539
40 1 2.9231 5.3824 2.2067
41 1 3.2516 7.1117 1.9426
42 1 1.5748 6.5411 2.1188
43 1 4.1814 2.0813 -0.0101
44 1 5.4495 -2.3487 -0.0083
45 1 4.2637 -4.4742 -0.0021
46 1 1.8071 -4.5499 0.0082
47 1 0.4976 -2.4940 0.0111
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001080150880.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 23:03:34
Heat of formation + Delta-G solvation = 24.975253 kcal
Electronic energy + Delta-G solvation = -29054.216376 eV
Core-core repulsion = 25201.531613 eV
Total energy + Delta-G solvation = -3852.684763 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-42.19045 -40.81293 -39.20909 -37.87654 -35.93093 -35.36169 -34.37069 -32.21630
-31.85280 -31.30483 -29.70500 -28.74799 -27.35952 -25.80470 -25.02060 -24.73948
-22.63058 -22.15167 -21.49685 -21.33403 -19.30105 -18.91346 -18.82203 -18.04708
-17.21735 -16.91031 -16.67131 -16.29551 -15.68334 -15.64446 -15.34305 -15.16779
-15.13426 -14.81699 -14.69117 -14.32260 -14.07922 -13.99092 -13.83584 -13.68084
-13.33753 -13.20711 -12.96895 -12.90168 -12.77191 -12.73344 -12.61391 -12.42493
-12.13864 -12.03128 -11.86289 -11.63690 -11.45557 -11.24229 -11.00591 -10.76735
-10.45583 -10.09091 -9.82476 -9.23927 -8.92839 -7.85220 -5.22994 -0.81794
-0.43035 0.82452 1.43584 1.45217 1.51572 1.55634 2.02990 2.25257
2.48519 3.03461 3.14407 3.33139 3.45081 3.51842 3.56591 3.64140
3.76115 3.79457 3.94604 4.05521 4.11052 4.19813 4.30898 4.40604
4.42513 4.49621 4.57446 4.62691 4.66804 4.73085 4.89238 4.92292
4.96265 5.03940 5.06860 5.09211 5.13478 5.26186 5.30125 5.40068
5.42884 5.44909 5.49906 5.50592 5.62233 5.78414 5.85082 6.16242
6.50729 6.74641 7.05733 7.19110 7.75402 8.38959 9.23863
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.014302 B = 0.002830 C = 0.002593
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1957.234475 B = 9891.909680 C =10794.479421
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C 0.040 3.960
3 C -0.218 4.218
4 C 0.561 3.439
5 O -0.563 6.563
6 N -0.697 5.697
7 C 0.139 3.861
8 H 0.078 0.922
9 C 0.189 3.811
10 N -0.628 5.628
11 C -0.239 4.239
12 H 0.089 0.911
13 C -0.071 4.071
14 N -0.952 5.952
15 Si 0.980 3.020
16 H -0.260 1.260
17 H -0.292 1.292
18 H -0.296 1.296
19 C 0.132 3.868
20 C -0.094 4.094
21 H 0.092 0.908
22 C -0.129 4.129
23 C 0.165 3.835
24 N -0.497 5.497
25 C 0.120 3.880
26 C -0.118 4.118
27 C -0.077 4.077
28 C -0.114 4.114
29 C -0.097 4.097
30 C -0.130 4.130
31 H 0.090 0.910
32 H 0.074 0.926
33 H 0.092 0.908
34 H 0.410 0.590
35 H 0.015 0.985
36 H -0.008 1.008
37 H 0.243 0.757
38 H 0.055 0.945
39 H 0.027 0.973
40 H 0.068 0.932
41 H 0.078 0.922
42 H 0.052 0.948
43 H 0.182 0.818
44 H 0.147 0.853
45 H 0.167 0.833
46 H 0.165 0.835
47 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.023 -17.690 13.150 23.817
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.032 3.968
3 C -0.223 4.223
4 C 0.349 3.651
5 O -0.443 6.443
6 N -0.348 5.348
7 C 0.033 3.967
8 H 0.096 0.904
9 C 0.063 3.937
10 N -0.355 5.355
11 C -0.368 4.368
12 H 0.107 0.893
13 C -0.264 4.264
14 N -0.601 5.601
15 Si 0.808 3.192
16 H -0.185 1.185
17 H -0.220 1.220
18 H -0.223 1.223
19 C 0.007 3.993
20 C -0.114 4.114
21 H 0.111 0.889
22 C -0.187 4.187
23 C -0.009 4.009
24 N -0.205 5.205
25 C 0.000 4.000
26 C -0.136 4.136
27 C -0.097 4.097
28 C -0.132 4.132
29 C -0.115 4.115
30 C -0.132 4.132
31 H 0.108 0.892
32 H 0.093 0.907
33 H 0.111 0.889
34 H 0.248 0.752
35 H 0.033 0.967
36 H 0.010 0.990
37 H 0.052 0.948
38 H 0.074 0.926
39 H 0.045 0.955
40 H 0.087 0.913
41 H 0.097 0.903
42 H 0.071 0.929
43 H 0.199 0.801
44 H 0.165 0.835
45 H 0.185 0.815
46 H 0.182 0.818
47 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges 9.035 -17.766 13.044 23.820
hybrid contribution -1.112 0.779 -1.394 1.946
sum 7.923 -16.986 11.650 22.069
Atomic orbital electron populations
1.21111 0.88455 1.04031 1.04134 1.20915 0.97761 0.91023 0.87112
1.20743 0.95842 0.93437 1.12325 1.18265 0.86679 0.84168 0.76004
1.90723 1.15012 1.87419 1.51172 1.45661 1.11014 1.04852 1.73258
1.22091 0.95449 0.82350 0.96801 0.90401 1.21094 0.96184 0.84461
0.91995 1.44747 1.74915 1.04589 1.11254 1.19543 1.34955 0.92368
0.89891 0.89343 1.25727 1.02038 0.96969 1.01661 1.70252 1.51158
1.09128 1.29570 0.84988 0.76767 0.78389 0.79071 1.18452 1.21953
1.22313 1.21867 0.95440 0.95451 0.86522 1.22548 0.98079 0.93020
0.97750 0.88935 1.21659 1.02437 1.02821 0.91761 1.23257 0.89627
0.97402 0.90589 1.67974 1.39763 0.97920 1.14848 1.19466 0.90219
0.93323 0.97000 1.21074 1.01225 0.89932 1.01399 1.21452 0.94873
0.98565 0.94784 1.21408 0.94242 0.99380 0.98173 1.21414 1.01560
0.90504 0.98019 1.18923 0.94095 0.94639 1.05497 0.89181 0.90721
0.88928 0.75221 0.96713 0.99019 0.94784 0.92632 0.95516 0.91316
0.90311 0.92904 0.80074 0.83515 0.81524 0.81769 0.83055
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -3.22 8.47 71.24 0.60 -2.62 16
2 C 0.04 1.14 5.99 -19.12 -0.11 1.02 16
3 C -0.22 -6.58 5.89 -20.00 -0.12 -6.69 16
4 C 0.56 19.88 7.71 86.76 0.67 20.55 16
5 O -0.56 -23.83 13.18 -3.90 -0.05 -23.88 16
6 N -0.70 -22.71 5.08 -439.86 -2.24 -24.95 16
7 C 0.14 5.33 2.70 46.18 0.12 5.45 16
8 H 0.08 3.18 7.60 -2.39 -0.02 3.16 16
9 C 0.19 9.88 5.12 86.73 0.44 10.32 16
10 N -0.63 -32.94 3.39 -691.99 -2.35 -35.29 16
11 C -0.24 -13.62 10.28 84.03 0.86 -12.76 16
12 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16
13 C -0.07 -4.20 5.49 84.86 0.47 -3.73 16
14 N -0.95 -60.21 10.31 21.65 0.22 -59.99 16
15 Si 0.98 47.13 29.55 68.60 2.03 49.16 16
16 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16
17 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16
18 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16
19 C 0.13 5.22 6.70 86.85 0.58 5.80 16
20 C -0.09 -2.94 3.25 -9.40 -0.03 -2.97 16
21 H 0.09 2.66 8.00 -2.39 -0.02 2.64 16
22 C -0.13 -2.95 9.31 71.98 0.67 -2.28 16
23 C 0.17 4.32 10.67 85.41 0.91 5.23 16
24 N -0.50 -13.42 10.30 -187.69 -1.93 -15.35 16
25 C 0.12 3.01 6.61 40.29 0.27 3.27 16
26 C -0.12 -2.15 9.97 22.34 0.22 -1.93 16
27 C -0.08 -0.94 9.94 22.04 0.22 -0.72 16
28 C -0.11 -1.39 9.96 22.05 0.22 -1.17 16
29 C -0.10 -1.67 9.32 22.35 0.21 -1.46 16
30 C -0.13 -3.17 5.74 -21.28 -0.12 -3.29 16
31 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16
32 H 0.07 2.55 5.96 -2.39 -0.01 2.53 16
33 H 0.09 1.83 6.21 -2.39 -0.01 1.81 16
34 H 0.41 10.52 6.58 -92.71 -0.61 9.91 16
35 H 0.01 0.86 7.27 -2.39 -0.02 0.84 16
36 H -0.01 -0.53 7.50 -2.39 -0.02 -0.55 16
37 H 0.24 15.05 8.31 -92.70 -0.77 14.28 16
38 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16
39 H 0.03 1.05 7.99 -2.38 -0.02 1.03 16
40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16
41 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16
42 H 0.05 1.27 8.07 -2.39 -0.02 1.25 16
43 H 0.18 3.62 6.42 -2.91 -0.02 3.60 16
44 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16
45 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16
46 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16
47 H 0.15 1.99 6.31 -2.91 -0.02 1.98 16
Total: -1.00 -80.11 377.04 2.16 -77.95
By element:
Atomic # 1 Polarization: 19.92 SS G_CDS: 0.39 Total: 20.31 kcal
Atomic # 6 Polarization: 5.96 SS G_CDS: 6.08 Total: 12.04 kcal
Atomic # 7 Polarization: -129.29 SS G_CDS: -6.30 Total: -135.58 kcal
Atomic # 8 Polarization: -23.83 SS G_CDS: -0.05 Total: -23.88 kcal
Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal
Total: -80.11 2.16 -77.95 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001080150880.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.927 kcal
(2) G-P(sol) polarization free energy of solvation -80.110 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.817 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.952 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.975 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds